Wall clock time and date at job start Mon Mar 30 2020 01:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99791 * 2 1 4 4 C 1.52992 * 109.47228 * 269.99945 * 3 2 1 5 5 C 1.53000 * 109.47296 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47186 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99598 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00380 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99700 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00133 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99935 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47308 * 89.99929 * 11 9 7 13 13 H 1.48507 * 109.47197 * 209.99891 * 11 9 7 14 14 H 1.48495 * 109.47151 * 329.99645 * 11 9 7 15 15 C 1.34774 * 120.00289 * 179.97438 * 2 1 3 16 16 O 1.21283 * 120.00288 * 179.97438 * 15 2 1 17 17 C 1.50700 * 119.99737 * 0.02562 * 15 2 1 18 18 H 1.09002 * 109.48161 * 54.99676 * 17 15 2 19 19 C 1.53093 * 109.47903 * 294.97243 * 17 15 2 20 20 C 1.53178 * 109.16255 * 182.39629 * 19 17 15 21 21 C 1.53178 * 109.03511 * 56.98447 * 20 19 17 22 22 C 1.53096 * 109.16278 * 303.01594 * 21 20 19 23 23 O 1.42904 * 109.47876 * 175.02146 * 17 15 2 24 24 H 1.08996 * 109.47394 * 269.99722 * 1 2 3 25 25 H 1.09006 * 109.47342 * 29.99961 * 1 2 3 26 26 H 1.09001 * 109.47129 * 150.00017 * 1 2 3 27 27 H 1.08996 * 109.46815 * 30.00148 * 3 2 1 28 28 H 1.08999 * 109.46851 * 150.00044 * 3 2 1 29 29 H 1.09009 * 109.47122 * 300.00045 * 4 3 2 30 30 H 1.08995 * 109.47494 * 59.99942 * 4 3 2 31 31 H 1.08999 * 109.47043 * 299.99909 * 5 4 3 32 32 H 1.08999 * 109.47017 * 59.99957 * 5 4 3 33 33 H 0.97000 * 120.00004 * 359.97438 * 6 5 4 34 34 H 0.97000 * 120.00208 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.52228 * 302.30610 * 19 17 15 36 36 H 1.08998 * 109.52401 * 62.49459 * 19 17 15 37 37 H 1.09002 * 109.54461 * 176.84793 * 20 19 17 38 38 H 1.08992 * 109.54753 * 297.02597 * 20 19 17 39 39 H 1.08999 * 109.52488 * 62.92180 * 21 20 19 40 40 H 1.08996 * 109.52248 * 183.05161 * 21 20 19 41 41 H 1.09003 * 109.48254 * 177.58780 * 22 21 20 42 42 H 1.08992 * 109.48305 * 297.61902 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2180 3.0352 -1.4424 6 7 3.4627 3.4578 -2.8237 7 6 4.1359 4.6237 -3.0738 8 1 4.4861 5.2320 -2.2529 9 6 4.3682 5.0239 -4.3825 10 7 5.0149 6.1448 -4.6231 11 14 3.7619 3.9723 -5.8024 12 1 2.3889 4.3940 -6.1797 13 1 4.6689 4.1412 -6.9661 14 1 3.7459 2.5458 -5.3902 15 6 2.1389 -1.1671 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4722 0.0005 18 1 0.6935 -2.4925 -0.8415 19 6 0.6019 -2.6094 1.3086 20 6 -0.1129 -3.9640 1.3269 21 6 0.9234 -5.0782 1.1504 22 6 1.6944 -4.8457 -0.1516 23 8 2.3095 -3.5560 -0.1158 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6083 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.0416 0.9508 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 2.6292 3.7950 -0.9285 32 1 4.1704 2.9045 -0.9287 33 1 3.1478 2.9118 -3.5610 34 1 5.1775 6.4243 -5.5376 35 1 1.2889 -2.5485 2.1527 36 1 -0.1339 -1.8083 1.3782 37 1 -0.6273 -4.0921 2.2793 38 1 -0.8368 -4.0054 0.5131 39 1 1.6168 -5.0672 1.9913 40 1 0.4175 -6.0427 1.1080 41 1 2.4623 -5.6116 -0.2610 42 1 1.0067 -4.8972 -0.9955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268786591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:30 Heat of formation + Delta-G solvation = -97.391770 kcal Electronic energy + Delta-G solvation = -21050.762104 eV Core-core repulsion = 17837.097811 eV Total energy + Delta-G solvation = -3213.664293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53317 -39.61606 -37.62723 -36.59355 -34.69592 -34.18386 -32.85657 -31.53324 -28.09650 -27.62185 -25.97958 -24.82614 -23.99569 -22.68162 -21.31803 -20.48529 -19.68121 -18.38105 -17.79472 -16.85577 -16.82756 -16.66818 -16.05787 -15.97848 -15.63956 -15.45048 -15.07553 -14.89862 -14.65035 -14.18804 -13.88347 -13.66540 -13.61877 -13.53014 -13.08785 -12.83597 -12.80975 -12.50649 -12.48051 -12.13055 -12.07308 -11.92359 -11.85991 -11.82184 -11.36932 -11.00673 -10.70628 -10.48306 -9.73605 -9.34688 -8.06302 -5.40666 1.34793 1.39054 1.46343 1.48641 1.71528 2.45543 2.91439 3.24561 3.41530 3.58255 3.74600 3.86180 3.94827 4.01629 4.02199 4.17769 4.18727 4.29895 4.38957 4.46254 4.56539 4.61727 4.68056 4.72185 4.76209 4.84472 4.88479 4.92106 5.05284 5.10016 5.16834 5.22281 5.24606 5.36386 5.48514 5.71410 6.07628 6.17937 6.36626 7.03418 7.10221 7.79385 7.98767 9.15249 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033642 B = 0.003345 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.098445 B = 8369.100667 C = 8669.144189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.608 5.608 3 C 0.125 3.875 4 C -0.127 4.127 5 C 0.157 3.843 6 N -0.762 5.762 7 C -0.240 4.240 8 H 0.057 0.943 9 C -0.065 4.065 10 N -0.983 5.983 11 Si 0.959 3.041 12 H -0.270 1.270 13 H -0.293 1.293 14 H -0.260 1.260 15 C 0.505 3.495 16 O -0.577 6.577 17 C 0.078 3.922 18 H 0.106 0.894 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.157 4.157 22 C 0.050 3.950 23 O -0.397 6.397 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.014 0.986 33 H 0.365 0.635 34 H 0.259 0.741 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.790 -24.835 13.583 34.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.341 5.341 3 C 0.002 3.998 4 C -0.166 4.166 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.371 4.371 8 H 0.075 0.925 9 C -0.256 4.256 10 N -0.633 5.633 11 Si 0.786 3.214 12 H -0.195 1.195 13 H -0.220 1.220 14 H -0.185 1.185 15 C 0.294 3.706 16 O -0.456 6.456 17 C 0.017 3.983 18 H 0.124 0.876 19 C -0.184 4.184 20 C -0.154 4.154 21 C -0.195 4.195 22 C -0.026 4.026 23 O -0.316 6.316 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.198 0.802 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.869 -24.625 13.662 33.898 hybrid contribution 0.357 -0.059 -1.080 1.139 sum -18.512 -24.684 12.582 33.321 Atomic orbital electron populations 1.22360 0.76432 1.05193 1.03989 1.47879 1.08847 1.04674 1.72706 1.21342 0.97918 0.84921 0.95644 1.21931 1.00606 0.95804 0.98235 1.20689 0.96826 0.94336 0.85148 1.42751 1.69209 1.24950 1.03824 1.19076 1.27389 0.97741 0.92923 0.92475 1.25560 1.01206 0.98816 1.00046 1.69888 1.48072 1.25256 1.20120 0.85347 0.78121 0.79160 0.78773 1.19528 1.21968 1.18474 1.20984 0.87609 0.86387 0.75648 1.90716 1.16490 1.87858 1.50545 1.21998 0.90642 0.84661 1.00975 0.87640 1.22294 0.99917 1.01229 0.94967 1.21619 0.97447 0.92056 1.04289 1.22217 0.98768 1.00742 0.97738 1.22911 0.98351 0.83329 0.97976 1.88042 1.33842 1.15049 1.94687 0.89580 0.89285 0.89133 0.86814 0.91926 0.94190 0.90095 0.94055 0.96766 0.80199 0.93172 0.92468 0.87172 0.89393 0.89614 0.92274 0.88424 0.88273 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 8.92 127.77 1.14 1.75 16 2 N -0.61 -12.90 2.87 -846.77 -2.43 -15.33 16 3 C 0.12 3.14 5.41 86.38 0.47 3.61 16 4 C -0.13 -3.98 5.65 30.59 0.17 -3.81 16 5 C 0.16 6.27 6.26 86.38 0.54 6.81 16 6 N -0.76 -38.00 5.41 -343.44 -1.86 -39.86 16 7 C -0.24 -14.44 10.47 84.03 0.88 -13.56 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 C -0.06 -3.97 5.50 84.86 0.47 -3.50 16 10 N -0.98 -64.79 13.97 21.65 0.30 -64.49 16 11 Si 0.96 47.13 27.74 68.60 1.90 49.03 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 14 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 15 C 0.51 13.94 7.10 87.66 0.62 14.56 16 16 O -0.58 -22.92 16.09 15.95 0.26 -22.66 16 17 C 0.08 1.51 2.24 29.88 0.07 1.57 16 18 H 0.11 1.48 7.13 -2.39 -0.02 1.46 16 19 C -0.15 -1.80 5.12 30.68 0.16 -1.64 16 20 C -0.12 -0.89 6.03 30.71 0.19 -0.71 16 21 C -0.16 -1.60 6.14 30.69 0.19 -1.41 16 22 C 0.05 0.74 6.84 72.01 0.49 1.23 16 23 O -0.40 -9.91 9.95 -129.99 -1.29 -11.20 16 24 H 0.09 0.48 7.06 -2.39 -0.02 0.46 16 25 H 0.09 0.77 8.07 -2.38 -0.02 0.75 16 26 H 0.09 0.56 6.06 -2.39 -0.01 0.55 16 27 H 0.11 2.12 8.07 -2.39 -0.02 2.10 16 28 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 29 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.37 17.39 5.53 -92.71 -0.51 16.88 16 34 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 0.77 5.17 -2.39 -0.01 0.76 16 37 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 38 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -84.29 332.89 2.68 -81.61 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.42 Total: 17.99 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.38 Total: 4.91 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -3.99 Total: -119.68 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.04 Total: -33.86 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.03 kcal Total: -84.29 2.68 -81.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268786591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.786 kcal (2) G-P(sol) polarization free energy of solvation -84.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds