Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99853 * 2 1 4 4 C 1.53000 * 109.46951 * 175.32447 * 3 2 1 5 5 C 1.50696 * 115.55197 * 65.36893 * 4 3 2 6 6 O 1.21282 * 119.99868 * 256.76270 * 5 4 3 7 7 N 1.34779 * 119.99919 * 76.76724 * 5 4 3 8 8 C 1.46501 * 120.00054 * 354.71468 * 7 5 4 9 9 C 1.46500 * 119.99605 * 174.71295 * 7 5 4 10 10 C 1.53007 * 109.46853 * 90.00375 * 9 7 5 11 11 N 1.46500 * 109.46853 * 180.02562 * 10 9 7 12 12 C 1.46503 * 119.99431 * 269.99703 * 11 10 9 13 13 C 1.36933 * 120.00408 * 89.99773 * 11 10 9 14 14 H 1.07994 * 119.99813 * 22.60218 * 13 11 10 15 15 C 1.38812 * 120.00084 * 202.60159 * 13 11 10 16 16 N 1.31625 * 119.99724 * 11.05016 * 15 13 11 17 17 Si 1.86794 * 120.00105 * 191.04620 * 15 13 11 18 18 H 1.48500 * 109.47350 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47073 * 120.00036 * 17 15 13 20 20 H 1.48501 * 109.47483 * 240.00255 * 17 15 13 21 21 C 1.53001 * 117.49302 * 279.70022 * 4 3 2 22 22 C 1.53003 * 117.49520 * 211.04558 * 4 3 2 23 23 H 1.08997 * 109.47023 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47124 * 59.99983 * 1 2 3 25 25 H 1.09004 * 109.46999 * 300.00099 * 1 2 3 26 26 H 1.09007 * 109.47157 * 295.31623 * 3 2 1 27 27 H 1.08993 * 109.47273 * 55.31757 * 3 2 1 28 28 H 1.08994 * 109.46756 * 95.21180 * 8 7 5 29 29 H 1.08993 * 109.46684 * 215.21652 * 8 7 5 30 30 H 1.08996 * 109.46750 * 335.21422 * 8 7 5 31 31 H 1.08997 * 109.47042 * 209.99706 * 9 7 5 32 32 H 1.08990 * 109.47386 * 330.00116 * 9 7 5 33 33 H 1.08997 * 109.46750 * 299.99509 * 10 9 7 34 34 H 1.08997 * 109.46960 * 59.99556 * 10 9 7 35 35 H 1.08991 * 109.47592 * 94.29802 * 12 11 10 36 36 H 1.09007 * 109.46648 * 214.29724 * 12 11 10 37 37 H 1.08998 * 109.47080 * 334.28836 * 12 11 10 38 38 H 0.97003 * 119.99330 * 180.02562 * 16 15 13 39 39 H 1.09000 * 117.50500 * 0.02562 * 21 4 3 40 40 H 1.09002 * 117.50125 * 145.02216 * 21 4 3 41 41 H 1.08999 * 117.49363 * 214.97745 * 22 4 3 42 42 H 1.09001 * 117.50420 * 359.96878 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5311 1.1866 0.1176 5 6 4.2239 0.5305 -1.0488 6 8 4.6088 -0.6161 -0.9587 7 7 4.4159 1.2180 -2.1921 8 6 3.8505 2.5610 -2.3430 9 6 5.1902 0.6222 -3.2837 10 6 4.2520 -0.1550 -4.2093 11 7 5.0263 -0.7513 -5.3007 12 6 5.2355 -0.0044 -6.5435 13 6 5.5545 -2.0068 -5.1591 14 1 5.1272 -2.6950 -4.4450 15 6 6.6392 -2.3947 -5.9335 16 7 7.2963 -1.5002 -6.6410 17 14 7.1665 -4.1863 -5.9715 18 1 6.2708 -4.9847 -5.0966 19 1 7.0827 -4.6976 -7.3632 20 1 8.5650 -4.3012 -5.4854 21 6 4.1153 0.9482 1.5114 22 6 4.2741 2.3136 0.8379 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.7566 1.8162 -0.9290 27 1 1.6239 1.8752 0.8450 28 1 4.6032 3.3039 -2.0793 29 1 3.5393 2.7100 -3.3769 30 1 2.9881 2.6681 -1.6850 31 1 5.6873 1.4105 -3.8490 32 1 5.9375 -0.0557 -2.8714 33 1 3.7549 -0.9433 -3.6441 34 1 3.5047 0.5229 -4.6217 35 1 6.1860 0.5266 -6.4927 36 1 5.2507 -0.6968 -7.3853 37 1 4.4254 0.7124 -6.6774 38 1 8.0540 -1.7714 -7.1825 39 1 3.4162 0.8756 2.3446 40 1 5.0010 0.3172 1.5848 41 1 5.2643 2.5802 0.4682 42 1 3.6796 3.1399 1.2275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272067822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = -17.510364 kcal Electronic energy + Delta-G solvation = -21725.407192 eV Core-core repulsion = 18515.206816 eV Total energy + Delta-G solvation = -3210.200376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17760 -37.91982 -36.44411 -35.75631 -34.73550 -31.36063 -28.94934 -28.19908 -26.42789 -25.90035 -25.73396 -24.03326 -22.59480 -21.82078 -20.28666 -18.51857 -17.08341 -16.63294 -16.33108 -16.02860 -15.78219 -15.33678 -14.87047 -14.43889 -14.24481 -13.66449 -13.42067 -13.08967 -12.89657 -12.64169 -12.34008 -12.25911 -12.14669 -11.76106 -11.70167 -11.50160 -11.22743 -10.80948 -10.76438 -10.72454 -10.44588 -10.40876 -10.02888 -9.84552 -9.78597 -9.68442 -9.27831 -8.53636 -8.25915 -6.66390 -5.64317 -3.09273 2.93215 3.15387 3.36780 3.46465 3.52850 3.57593 3.91035 4.47588 4.59383 4.64172 4.73458 4.84758 4.98217 5.11914 5.20504 5.28843 5.40314 5.42889 5.49353 5.54312 5.54850 5.59676 5.75729 5.77560 5.79779 5.91996 5.99045 6.32829 6.36635 6.73913 6.78454 6.85839 7.00763 7.15714 7.43710 7.77501 7.79700 7.93843 8.48949 8.60616 9.33757 9.95474 10.43500 11.41353 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.004605 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.058333 B = 6078.515430 C = 6241.562345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.104 3.896 4 C -0.157 4.157 5 C 0.548 3.452 6 O -0.519 6.519 7 N -0.611 5.611 8 C 0.078 3.922 9 C 0.096 3.904 10 C 0.144 3.856 11 N -0.600 5.600 12 C 0.164 3.836 13 C -0.247 4.247 14 H 0.071 0.929 15 C 0.000 4.000 16 N -0.913 5.913 17 Si 0.905 3.095 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.290 1.290 21 C -0.137 4.137 22 C -0.155 4.155 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.045 0.955 37 H -0.005 1.005 38 H 0.250 0.750 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 12.556 13.783 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.027 3.973 4 C -0.160 4.160 5 C 0.333 3.667 6 O -0.394 6.394 7 N -0.345 5.345 8 C -0.066 4.066 9 C -0.029 4.029 10 C 0.016 3.984 11 N -0.323 5.323 12 C 0.020 3.980 13 C -0.377 4.377 14 H 0.088 0.912 15 C -0.198 4.198 16 N -0.559 5.559 17 Si 0.735 3.265 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.174 4.174 22 C -0.192 4.192 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.013 0.987 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.082 11.721 13.664 21.140 hybrid contribution 0.201 -0.509 -0.157 0.570 sum -10.880 11.212 13.507 20.653 Atomic orbital electron populations 1.22759 0.81069 1.03044 0.99665 1.88055 1.19400 1.26864 1.95258 1.21988 0.89336 0.85452 1.00523 1.21328 0.94111 1.05738 0.94838 1.19267 0.79166 0.85828 0.82394 1.90736 1.49872 1.16675 1.82086 1.48001 1.54004 1.16787 1.15691 1.21828 0.98338 0.83846 1.02542 1.22576 0.95799 0.97592 0.86886 1.21103 0.92772 0.95222 0.89317 1.43980 1.61615 1.15898 1.10788 1.20813 0.95408 0.93686 0.88131 1.19337 1.08947 0.88691 1.20686 0.91164 1.25021 0.96218 0.97900 1.00651 1.70078 1.21232 1.31499 1.33051 0.86157 0.78206 0.84886 0.77240 1.20227 1.21712 1.21731 1.22953 1.03122 0.98219 0.93138 1.23115 1.01602 0.92164 1.02293 0.89431 0.94036 0.94264 0.92224 0.92516 0.92983 0.91241 0.91332 0.91501 0.89898 0.93369 0.94835 0.95389 0.93597 0.98665 0.93938 0.87953 0.87775 0.87857 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.27 10.64 -35.23 -0.37 -5.64 16 3 C 0.10 1.15 5.45 37.16 0.20 1.35 16 4 C -0.16 -2.02 1.04 -155.66 -0.16 -2.18 16 5 C 0.55 9.77 6.78 -10.99 -0.07 9.70 16 6 O -0.52 -11.95 16.59 5.56 0.09 -11.86 16 7 N -0.61 -10.13 2.87 -181.58 -0.52 -10.65 16 8 C 0.08 0.89 9.92 59.85 0.59 1.49 16 9 C 0.10 1.96 5.72 -4.04 -0.02 1.94 16 10 C 0.14 3.25 6.03 -4.04 -0.02 3.23 16 11 N -0.60 -15.97 2.92 -181.12 -0.53 -16.50 16 12 C 0.16 4.16 9.01 59.85 0.54 4.70 16 13 C -0.25 -7.25 9.67 -15.06 -0.15 -7.39 16 14 H 0.07 2.10 7.84 -52.49 -0.41 1.69 16 15 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 16 N -0.91 -27.41 10.58 55.49 0.59 -26.82 16 17 Si 0.90 23.11 29.57 -169.99 -5.03 18.08 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 C -0.14 -1.56 9.84 -26.69 -0.26 -1.82 16 22 C -0.15 -1.44 9.46 -26.69 -0.25 -1.69 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.60 6.06 -51.92 -0.31 0.29 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 30 H 0.07 0.64 4.49 -51.93 -0.23 0.41 16 31 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.08 2.01 7.50 -51.93 -0.39 1.62 16 33 H 0.05 1.18 8.03 -51.93 -0.42 0.76 16 34 H 0.03 0.68 7.86 -51.93 -0.41 0.27 16 35 H 0.03 0.75 7.41 -51.93 -0.38 0.37 16 36 H 0.05 1.25 7.20 -51.92 -0.37 0.87 16 37 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -35.34 345.51 -6.27 -41.61 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -7.12 Total: -4.05 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 1.41 Total: 10.62 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.46 Total: -53.98 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.28 Total: -17.50 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.03 Total: 18.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.34 -6.27 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272067822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.098 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds