Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99853 * 2 1 4 4 C 1.53000 * 109.46951 * 175.32447 * 3 2 1 5 5 C 1.50696 * 115.55197 * 65.36893 * 4 3 2 6 6 O 1.21282 * 119.99868 * 256.76270 * 5 4 3 7 7 N 1.34779 * 119.99919 * 76.76724 * 5 4 3 8 8 C 1.46501 * 120.00054 * 354.71468 * 7 5 4 9 9 C 1.46500 * 119.99605 * 174.71295 * 7 5 4 10 10 C 1.53007 * 109.46853 * 90.00375 * 9 7 5 11 11 N 1.46500 * 109.46853 * 180.02562 * 10 9 7 12 12 C 1.46503 * 119.99431 * 269.99703 * 11 10 9 13 13 C 1.36933 * 120.00408 * 89.99773 * 11 10 9 14 14 H 1.07994 * 119.99813 * 22.60218 * 13 11 10 15 15 C 1.38812 * 120.00084 * 202.60159 * 13 11 10 16 16 N 1.31625 * 119.99724 * 11.05016 * 15 13 11 17 17 Si 1.86794 * 120.00105 * 191.04620 * 15 13 11 18 18 H 1.48500 * 109.47350 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47073 * 120.00036 * 17 15 13 20 20 H 1.48501 * 109.47483 * 240.00255 * 17 15 13 21 21 C 1.53001 * 117.49302 * 279.70022 * 4 3 2 22 22 C 1.53003 * 117.49520 * 211.04558 * 4 3 2 23 23 H 1.08997 * 109.47023 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47124 * 59.99983 * 1 2 3 25 25 H 1.09004 * 109.46999 * 300.00099 * 1 2 3 26 26 H 1.09007 * 109.47157 * 295.31623 * 3 2 1 27 27 H 1.08993 * 109.47273 * 55.31757 * 3 2 1 28 28 H 1.08994 * 109.46756 * 95.21180 * 8 7 5 29 29 H 1.08993 * 109.46684 * 215.21652 * 8 7 5 30 30 H 1.08996 * 109.46750 * 335.21422 * 8 7 5 31 31 H 1.08997 * 109.47042 * 209.99706 * 9 7 5 32 32 H 1.08990 * 109.47386 * 330.00116 * 9 7 5 33 33 H 1.08997 * 109.46750 * 299.99509 * 10 9 7 34 34 H 1.08997 * 109.46960 * 59.99556 * 10 9 7 35 35 H 1.08991 * 109.47592 * 94.29802 * 12 11 10 36 36 H 1.09007 * 109.46648 * 214.29724 * 12 11 10 37 37 H 1.08998 * 109.47080 * 334.28836 * 12 11 10 38 38 H 0.97003 * 119.99330 * 180.02562 * 16 15 13 39 39 H 1.09000 * 117.50500 * 0.02562 * 21 4 3 40 40 H 1.09002 * 117.50125 * 145.02216 * 21 4 3 41 41 H 1.08999 * 117.49363 * 214.97745 * 22 4 3 42 42 H 1.09001 * 117.50420 * 359.96878 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5311 1.1866 0.1176 5 6 4.2239 0.5305 -1.0488 6 8 4.6088 -0.6161 -0.9587 7 7 4.4159 1.2180 -2.1921 8 6 3.8505 2.5610 -2.3430 9 6 5.1902 0.6222 -3.2837 10 6 4.2520 -0.1550 -4.2093 11 7 5.0263 -0.7513 -5.3007 12 6 5.2355 -0.0044 -6.5435 13 6 5.5545 -2.0068 -5.1591 14 1 5.1272 -2.6950 -4.4450 15 6 6.6392 -2.3947 -5.9335 16 7 7.2963 -1.5002 -6.6410 17 14 7.1665 -4.1863 -5.9715 18 1 6.2708 -4.9847 -5.0966 19 1 7.0827 -4.6976 -7.3632 20 1 8.5650 -4.3012 -5.4854 21 6 4.1153 0.9482 1.5114 22 6 4.2741 2.3136 0.8379 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.7566 1.8162 -0.9290 27 1 1.6239 1.8752 0.8450 28 1 4.6032 3.3039 -2.0793 29 1 3.5393 2.7100 -3.3769 30 1 2.9881 2.6681 -1.6850 31 1 5.6873 1.4105 -3.8490 32 1 5.9375 -0.0557 -2.8714 33 1 3.7549 -0.9433 -3.6441 34 1 3.5047 0.5229 -4.6217 35 1 6.1860 0.5266 -6.4927 36 1 5.2507 -0.6968 -7.3853 37 1 4.4254 0.7124 -6.6774 38 1 8.0540 -1.7714 -7.1825 39 1 3.4162 0.8756 2.3446 40 1 5.0010 0.3172 1.5848 41 1 5.2643 2.5802 0.4682 42 1 3.6796 3.1399 1.2275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272067822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = -42.262340 kcal Electronic energy + Delta-G solvation = -21726.480518 eV Core-core repulsion = 18515.206816 eV Total energy + Delta-G solvation = -3211.273702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38649 -38.96803 -37.89492 -37.12121 -36.37856 -33.45925 -30.51059 -29.16481 -27.95611 -27.59120 -26.71799 -25.67013 -23.41785 -23.28752 -22.09155 -19.73242 -18.84966 -18.09067 -17.42308 -17.11560 -17.03261 -16.68960 -16.37825 -15.75268 -15.58106 -15.33166 -14.93541 -14.70778 -14.19670 -13.96602 -13.91561 -13.49343 -13.15798 -13.13719 -12.96974 -12.82648 -12.72320 -12.49182 -12.43724 -12.28166 -12.08428 -12.05559 -11.68306 -11.57519 -11.25450 -10.76154 -10.72026 -10.47666 -9.75570 -8.79515 -7.88827 -5.36620 1.40365 1.41834 1.53419 1.62343 1.99595 2.41232 2.48516 3.09559 3.25273 3.50633 3.67466 3.76449 3.89384 4.02068 4.14018 4.20480 4.40031 4.43465 4.51855 4.53834 4.58111 4.64524 4.71104 4.74631 4.79436 4.83045 4.86785 4.95803 4.97078 4.98458 5.14100 5.18494 5.31476 5.54541 5.62539 5.70297 6.25616 6.29012 6.49736 7.11796 7.25000 7.81443 8.22430 9.14438 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.004605 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.058333 B = 6078.515430 C = 6241.562345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.103 3.897 4 C -0.175 4.175 5 C 0.537 3.463 6 O -0.589 6.589 7 N -0.609 5.609 8 C 0.070 3.930 9 C 0.114 3.886 10 C 0.151 3.849 11 N -0.617 5.617 12 C 0.178 3.822 13 C -0.265 4.265 14 H 0.052 0.948 15 C -0.046 4.046 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.288 1.288 21 C -0.150 4.150 22 C -0.116 4.116 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.009 0.991 36 H 0.019 0.981 37 H 0.036 0.964 38 H 0.251 0.749 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.170 15.192 14.820 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C 0.027 3.973 4 C -0.178 4.178 5 C 0.326 3.674 6 O -0.469 6.469 7 N -0.341 5.341 8 C -0.071 4.071 9 C -0.012 4.012 10 C 0.024 3.976 11 N -0.341 5.341 12 C 0.034 3.966 13 C -0.395 4.395 14 H 0.070 0.930 15 C -0.241 4.241 16 N -0.580 5.580 17 Si 0.794 3.206 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.215 1.215 21 C -0.187 4.187 22 C -0.152 4.152 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.027 0.973 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.746 14.427 14.710 24.227 hybrid contribution 0.662 -1.293 -0.445 1.519 sum -12.084 13.134 14.264 22.847 Atomic orbital electron populations 1.22915 0.79238 1.03442 1.01343 1.88007 1.21647 1.29018 1.95624 1.22179 0.87570 0.84827 1.02724 1.21318 0.95344 1.08267 0.92882 1.20293 0.78191 0.85178 0.83726 1.90695 1.52822 1.19954 1.83432 1.48030 1.53211 1.18561 1.14296 1.22198 0.99886 0.81029 1.04014 1.21957 0.94634 0.96971 0.87615 1.21087 0.93043 0.94893 0.88583 1.44160 1.61764 1.15697 1.12434 1.20607 0.96013 0.93313 0.86697 1.19419 1.09423 0.90061 1.20607 0.92963 1.25707 0.96238 1.01731 1.00448 1.70207 1.21429 1.32962 1.33412 0.85228 0.77547 0.80380 0.77471 1.20172 1.20653 1.21498 1.23031 1.02615 0.99840 0.93235 1.23294 1.01321 0.91845 0.98774 0.89894 0.93120 0.91673 0.91189 0.88565 0.90574 0.90357 0.88595 0.90293 0.94835 0.96355 0.91589 0.97299 0.96224 0.94567 0.94008 0.85660 0.90699 0.88282 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.29 10.64 -148.98 -1.58 -12.88 16 3 C 0.10 1.95 5.45 71.98 0.39 2.35 16 4 C -0.17 -4.17 1.04 -52.93 -0.06 -4.22 16 5 C 0.54 19.47 6.78 87.66 0.59 20.06 16 6 O -0.59 -29.00 16.59 -3.03 -0.05 -29.05 16 7 N -0.61 -19.83 2.87 -846.79 -2.43 -22.26 16 8 C 0.07 1.36 9.92 127.77 1.27 2.63 16 9 C 0.11 4.77 5.72 86.38 0.49 5.26 16 10 C 0.15 6.93 6.03 86.38 0.52 7.45 16 11 N -0.62 -33.53 2.92 -726.94 -2.13 -35.66 16 12 C 0.18 9.03 9.01 127.77 1.15 10.18 16 13 C -0.26 -16.10 9.67 84.03 0.81 -15.29 16 14 H 0.05 3.29 7.84 -2.91 -0.02 3.27 16 15 C -0.05 -2.75 5.13 84.86 0.44 -2.31 16 16 N -0.93 -57.07 10.58 21.65 0.23 -56.84 16 17 Si 0.97 48.56 29.57 68.60 2.03 50.59 16 18 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 C -0.15 -3.20 9.84 30.62 0.30 -2.89 16 22 C -0.12 -1.72 9.46 30.62 0.29 -1.43 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 1.13 6.06 -2.38 -0.01 1.12 16 27 H 0.10 1.07 8.09 -2.39 -0.02 1.05 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.43 8.11 -2.39 -0.02 1.41 16 30 H 0.10 1.37 4.49 -2.39 -0.01 1.36 16 31 H 0.08 3.09 8.07 -2.39 -0.02 3.07 16 32 H 0.03 1.72 7.50 -2.39 -0.02 1.71 16 33 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 34 H 0.07 2.57 7.86 -2.39 -0.02 2.55 16 35 H 0.01 0.47 7.41 -2.39 -0.02 0.46 16 36 H 0.02 1.06 7.20 -2.38 -0.02 1.04 16 37 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 38 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -82.70 345.51 4.49 -78.21 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 0.98 Total: 4.41 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 7.45 Total: 23.49 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -4.33 Total: -114.76 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -1.63 Total: -41.93 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -82.70 4.49 -78.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272067822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.944 kcal (2) G-P(sol) polarization free energy of solvation -82.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds