Wall clock time and date at job start Mon Mar 30 2020 01:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00233 * 2 1 4 4 C 1.53790 * 113.61570 * 150.00051 * 3 2 1 5 5 C 1.53782 * 87.07819 * 89.20183 * 4 3 2 6 6 C 1.50696 * 113.61059 * 139.98282 * 5 4 3 7 7 O 1.21279 * 120.00750 * 1.52747 * 6 5 4 8 8 N 1.34778 * 119.99888 * 181.52672 * 6 5 4 9 9 C 1.46493 * 120.00131 * 0.02562 * 8 6 5 10 10 C 1.46506 * 120.00058 * 179.97438 * 8 6 5 11 11 C 1.52997 * 109.47289 * 270.00324 * 10 8 6 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 8 13 13 N 1.46499 * 109.47369 * 179.97438 * 12 11 10 14 14 C 1.36937 * 120.00316 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99647 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00249 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99665 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46901 * 89.99820 * 18 16 14 20 20 H 1.48498 * 109.47318 * 209.99684 * 18 16 14 21 21 H 1.48497 * 109.47034 * 330.00076 * 18 16 14 22 22 C 1.53779 * 87.17446 * 25.39230 * 5 4 3 23 23 H 1.08995 * 109.47012 * 59.99913 * 1 2 3 24 24 H 1.09005 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47374 * 299.99688 * 1 2 3 26 26 H 1.09000 * 112.85096 * 18.80786 * 3 2 1 27 27 H 1.09000 * 113.60933 * 334.65109 * 4 3 2 28 28 H 1.09000 * 113.61015 * 203.74822 * 4 3 2 29 29 H 1.09003 * 113.61624 * 270.79997 * 5 4 3 30 30 H 1.09006 * 109.47498 * 269.99982 * 9 8 6 31 31 H 1.09006 * 109.47571 * 29.99644 * 9 8 6 32 32 H 1.09005 * 109.47727 * 150.00102 * 9 8 6 33 33 H 1.09001 * 109.47060 * 30.00593 * 10 8 6 34 34 H 1.09004 * 109.47073 * 150.00082 * 10 8 6 35 35 H 1.09001 * 109.46832 * 299.99854 * 11 10 8 36 36 H 1.08996 * 109.46952 * 59.99873 * 11 10 8 37 37 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 38 38 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 39 39 H 0.96998 * 119.99822 * 0.02562 * 13 12 11 40 40 H 0.97001 * 119.99952 * 179.97438 * 17 16 14 41 41 H 1.09001 * 113.61669 * 89.15822 * 22 5 4 42 42 H 1.09005 * 113.61067 * 220.05939 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3756 1.3718 0.7045 5 6 4.0063 1.0352 -0.6570 6 6 5.2712 1.8028 -0.9426 7 8 5.7107 2.5760 -0.1181 8 7 5.9142 1.6301 -2.1145 9 6 5.3832 0.6966 -3.1107 10 6 7.1437 2.3768 -2.3924 11 6 6.7931 3.7014 -3.0733 12 6 8.0770 4.4808 -3.3641 13 7 7.7414 5.7488 -4.0166 14 6 8.7362 6.6196 -4.3734 15 1 9.7681 6.3718 -4.1734 16 6 8.4181 7.8214 -4.9911 17 7 7.1604 8.1236 -5.2344 18 14 9.7751 9.0095 -5.4772 19 1 10.2281 8.7053 -6.8583 20 1 9.2586 10.4007 -5.4209 21 1 10.9172 8.8671 -4.5390 22 6 2.7535 1.6496 -1.3035 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.3138 2.0788 0.3238 27 1 3.5176 0.5947 1.4556 28 1 3.6305 2.3667 1.0698 29 1 4.1106 -0.0348 -0.8374 30 1 5.8056 -0.2941 -2.9420 31 1 4.2978 0.6487 -3.0218 32 1 5.6510 1.0402 -4.1099 33 1 7.6669 2.5763 -1.4572 34 1 7.7850 1.7892 -3.0493 35 1 6.2699 3.5018 -4.0085 36 1 6.1517 4.2889 -2.4164 37 1 8.6006 4.6804 -2.4291 38 1 8.7181 3.8930 -4.0212 39 1 6.8145 5.9719 -4.1951 40 1 6.9381 8.9635 -5.6657 41 1 2.8381 2.7205 -1.4883 42 1 2.3941 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276064814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:15 Heat of formation + Delta-G solvation = -48.282221 kcal Electronic energy + Delta-G solvation = -20688.178306 eV Core-core repulsion = 17476.643563 eV Total energy + Delta-G solvation = -3211.534743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67264 -38.79296 -36.30347 -35.65917 -34.75333 -32.20406 -29.89203 -27.51495 -26.90281 -26.34273 -25.96273 -24.54013 -22.66256 -20.95064 -20.33639 -18.97244 -17.59293 -17.01102 -16.47782 -16.25314 -15.65514 -15.49534 -15.15779 -14.58100 -14.47779 -14.05667 -13.79540 -13.24295 -13.04277 -12.95361 -12.78849 -12.52621 -12.37163 -12.11488 -11.89665 -11.79463 -11.63713 -11.00584 -10.88940 -10.82271 -10.69108 -10.68113 -10.34943 -10.04739 -9.90554 -9.69859 -9.52615 -8.82816 -8.60013 -6.87402 -5.72193 -3.00652 2.64029 3.02848 3.31221 3.46587 3.51309 3.53604 4.21105 4.32099 4.46129 4.53994 4.63742 4.87193 4.96475 5.03008 5.05492 5.11004 5.23391 5.29904 5.32563 5.46964 5.50208 5.52338 5.59843 5.60873 5.73175 5.75234 5.82189 5.92850 6.01609 6.14018 6.34858 6.43603 6.60565 6.86593 6.91134 6.93785 7.41282 7.73998 8.23080 8.46939 9.57633 10.16576 10.51296 11.51026 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.003011 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.902309 B = 9295.628523 C = 9630.768348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.061 3.939 4 C -0.117 4.117 5 C -0.128 4.128 6 C 0.519 3.481 7 O -0.536 6.536 8 N -0.614 5.614 9 C 0.077 3.923 10 C 0.117 3.883 11 C -0.138 4.138 12 C 0.156 3.844 13 N -0.734 5.734 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.017 4.017 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.141 4.141 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.096 0.904 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.867 -20.202 8.569 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.003 3.997 4 C -0.155 4.155 5 C -0.149 4.149 6 C 0.307 3.693 7 O -0.412 6.412 8 N -0.347 5.347 9 C -0.067 4.067 10 C -0.005 4.005 11 C -0.177 4.177 12 C 0.028 3.972 13 N -0.378 5.378 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.212 4.212 17 N -0.584 5.584 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.179 4.179 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.344 -19.891 8.985 25.075 hybrid contribution 0.206 0.917 -0.617 1.124 sum -12.138 -18.974 8.368 24.028 Atomic orbital electron populations 1.22823 0.80817 1.02791 1.00186 1.87866 1.19811 1.26601 1.94573 1.23124 0.94784 0.85203 0.96575 1.23115 0.92617 1.04064 0.95660 1.22684 0.92059 1.00877 0.99285 1.20542 0.85119 0.82445 0.81196 1.90704 1.66993 1.37185 1.46319 1.47903 1.26664 1.43233 1.16906 1.21827 0.99648 0.92587 0.92592 1.21493 0.85192 0.92473 1.01352 1.22043 0.99840 0.95471 1.00312 1.20545 0.93530 0.87752 0.95367 1.42358 1.07042 1.16994 1.71373 1.19258 0.88695 0.97478 1.31451 0.91146 1.24756 0.96271 0.98282 1.01915 1.69668 1.15735 1.24559 1.48440 0.86162 0.80990 0.80595 0.78311 1.21743 1.21769 1.20743 1.23443 0.94367 1.02022 0.98108 0.93851 0.89568 0.93870 0.90247 0.90156 0.87452 0.86785 0.92719 0.90966 0.90701 0.89839 0.90595 0.92072 0.91671 0.96215 0.96413 0.78349 0.93562 0.88540 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.28 16 2 O -0.37 -3.36 10.63 -35.23 -0.37 -3.73 16 3 C 0.06 0.54 4.38 -25.82 -0.11 0.42 16 4 C -0.12 -1.18 7.23 -25.91 -0.19 -1.37 16 5 C -0.13 -1.32 2.73 -90.96 -0.25 -1.57 16 6 C 0.52 7.21 7.20 -10.99 -0.08 7.13 16 7 O -0.54 -9.60 15.49 5.56 0.09 -9.51 16 8 N -0.61 -7.78 2.87 -181.57 -0.52 -8.30 16 9 C 0.08 0.68 10.13 59.84 0.61 1.29 16 10 C 0.12 1.69 5.41 -4.04 -0.02 1.67 16 11 C -0.14 -2.42 5.65 -26.73 -0.15 -2.57 16 12 C 0.16 3.33 6.26 -4.04 -0.03 3.31 16 13 N -0.73 -19.71 5.60 -59.91 -0.34 -20.05 16 14 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 15 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 17 N -0.94 -29.18 13.06 55.49 0.72 -28.46 16 18 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.14 -1.29 6.68 -25.83 -0.17 -1.46 16 23 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.11 1.22 7.45 -51.93 -0.39 0.83 16 29 H 0.11 1.04 7.92 -51.93 -0.41 0.63 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 5.66 -51.93 -0.29 0.26 16 32 H 0.07 0.64 8.07 -51.93 -0.42 0.23 16 33 H 0.08 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 10.78 7.67 -40.82 -0.31 10.47 16 40 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 42 H 0.08 0.65 7.60 -51.93 -0.39 0.26 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -34.72 345.78 -6.98 -41.70 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.20 Total: 4.71 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 0.46 Total: 0.44 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.13 Total: -56.80 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.29 Total: -13.25 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.72 -6.98 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276064814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.582 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds