Wall clock time and date at job start Mon Mar 30 2020 01:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00233 * 2 1 4 4 C 1.53790 * 113.61570 * 150.00051 * 3 2 1 5 5 C 1.53782 * 87.07819 * 89.20183 * 4 3 2 6 6 C 1.50696 * 113.61059 * 139.98282 * 5 4 3 7 7 O 1.21279 * 120.00750 * 1.52747 * 6 5 4 8 8 N 1.34778 * 119.99888 * 181.52672 * 6 5 4 9 9 C 1.46493 * 120.00131 * 0.02562 * 8 6 5 10 10 C 1.46506 * 120.00058 * 179.97438 * 8 6 5 11 11 C 1.52997 * 109.47289 * 270.00324 * 10 8 6 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 8 13 13 N 1.46499 * 109.47369 * 179.97438 * 12 11 10 14 14 C 1.36937 * 120.00316 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99647 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00249 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99665 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46901 * 89.99820 * 18 16 14 20 20 H 1.48498 * 109.47318 * 209.99684 * 18 16 14 21 21 H 1.48497 * 109.47034 * 330.00076 * 18 16 14 22 22 C 1.53779 * 87.17446 * 25.39230 * 5 4 3 23 23 H 1.08995 * 109.47012 * 59.99913 * 1 2 3 24 24 H 1.09005 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47374 * 299.99688 * 1 2 3 26 26 H 1.09000 * 112.85096 * 18.80786 * 3 2 1 27 27 H 1.09000 * 113.60933 * 334.65109 * 4 3 2 28 28 H 1.09000 * 113.61015 * 203.74822 * 4 3 2 29 29 H 1.09003 * 113.61624 * 270.79997 * 5 4 3 30 30 H 1.09006 * 109.47498 * 269.99982 * 9 8 6 31 31 H 1.09006 * 109.47571 * 29.99644 * 9 8 6 32 32 H 1.09005 * 109.47727 * 150.00102 * 9 8 6 33 33 H 1.09001 * 109.47060 * 30.00593 * 10 8 6 34 34 H 1.09004 * 109.47073 * 150.00082 * 10 8 6 35 35 H 1.09001 * 109.46832 * 299.99854 * 11 10 8 36 36 H 1.08996 * 109.46952 * 59.99873 * 11 10 8 37 37 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 38 38 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 39 39 H 0.96998 * 119.99822 * 0.02562 * 13 12 11 40 40 H 0.97001 * 119.99952 * 179.97438 * 17 16 14 41 41 H 1.09001 * 113.61669 * 89.15822 * 22 5 4 42 42 H 1.09005 * 113.61067 * 220.05939 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3756 1.3718 0.7045 5 6 4.0063 1.0352 -0.6570 6 6 5.2712 1.8028 -0.9426 7 8 5.7107 2.5760 -0.1181 8 7 5.9142 1.6301 -2.1145 9 6 5.3832 0.6966 -3.1107 10 6 7.1437 2.3768 -2.3924 11 6 6.7931 3.7014 -3.0733 12 6 8.0770 4.4808 -3.3641 13 7 7.7414 5.7488 -4.0166 14 6 8.7362 6.6196 -4.3734 15 1 9.7681 6.3718 -4.1734 16 6 8.4181 7.8214 -4.9911 17 7 7.1604 8.1236 -5.2344 18 14 9.7751 9.0095 -5.4772 19 1 10.2281 8.7053 -6.8583 20 1 9.2586 10.4007 -5.4209 21 1 10.9172 8.8671 -4.5390 22 6 2.7535 1.6496 -1.3035 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.3138 2.0788 0.3238 27 1 3.5176 0.5947 1.4556 28 1 3.6305 2.3667 1.0698 29 1 4.1106 -0.0348 -0.8374 30 1 5.8056 -0.2941 -2.9420 31 1 4.2978 0.6487 -3.0218 32 1 5.6510 1.0402 -4.1099 33 1 7.6669 2.5763 -1.4572 34 1 7.7850 1.7892 -3.0493 35 1 6.2699 3.5018 -4.0085 36 1 6.1517 4.2889 -2.4164 37 1 8.6006 4.6804 -2.4291 38 1 8.7181 3.8930 -4.0212 39 1 6.8145 5.9719 -4.1951 40 1 6.9381 8.9635 -5.6657 41 1 2.8381 2.7205 -1.4883 42 1 2.3941 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276064814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:15 Heat of formation + Delta-G solvation = -72.312699 kcal Electronic energy + Delta-G solvation = -20689.220346 eV Core-core repulsion = 17476.643563 eV Total energy + Delta-G solvation = -3212.576783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59858 -39.65653 -37.58078 -36.52713 -36.39287 -34.04689 -31.67655 -28.37688 -27.90063 -27.20998 -26.72211 -26.00822 -24.31454 -22.56473 -21.21167 -19.89446 -19.17049 -18.50853 -17.48546 -17.02331 -16.70241 -16.51328 -16.23086 -15.97351 -15.84289 -15.30396 -15.17205 -14.75166 -14.52847 -13.88514 -13.62480 -13.51333 -13.39607 -13.22529 -12.95686 -12.89593 -12.78706 -12.68892 -12.41986 -12.30684 -12.08386 -11.85600 -11.80726 -11.69555 -11.42548 -10.96615 -10.73335 -10.43971 -9.67315 -9.05078 -7.98150 -5.28394 1.45575 1.48469 1.56949 1.58326 2.03795 2.54579 2.69292 3.35179 3.41919 3.53984 3.66062 3.77689 3.85737 4.02389 4.19981 4.24817 4.33247 4.37955 4.51558 4.57373 4.60246 4.60943 4.69828 4.72919 4.74191 4.79160 4.87303 4.90073 4.91739 5.01353 5.06170 5.17442 5.27821 5.28356 5.45977 5.56373 6.23970 6.26537 6.40991 7.17555 7.29388 8.04127 8.28097 9.25804 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.003011 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.902309 B = 9295.628523 C = 9630.768348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.384 6.384 3 C 0.071 3.929 4 C -0.123 4.123 5 C -0.121 4.121 6 C 0.511 3.489 7 O -0.586 6.586 8 N -0.613 5.613 9 C 0.070 3.930 10 C 0.125 3.875 11 C -0.119 4.119 12 C 0.155 3.845 13 N -0.749 5.749 14 C -0.250 4.250 15 H 0.077 0.923 16 C -0.079 4.079 17 N -0.972 5.972 18 Si 0.979 3.021 19 H -0.282 1.282 20 H -0.294 1.294 21 H -0.270 1.270 22 C -0.136 4.136 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.013 0.987 38 H 0.034 0.966 39 H 0.372 0.628 40 H 0.252 0.748 41 H 0.083 0.917 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.022 -21.914 7.878 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.303 6.303 3 C 0.013 3.987 4 C -0.161 4.161 5 C -0.142 4.142 6 C 0.301 3.699 7 O -0.467 6.467 8 N -0.345 5.345 9 C -0.071 4.071 10 C 0.001 3.999 11 C -0.158 4.158 12 C 0.028 3.972 13 N -0.392 5.392 14 C -0.382 4.382 15 H 0.095 0.905 16 C -0.270 4.270 17 N -0.622 5.622 18 Si 0.808 3.192 19 H -0.209 1.209 20 H -0.220 1.220 21 H -0.195 1.195 22 C -0.174 4.174 23 H 0.069 0.931 24 H 0.118 0.882 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.152 0.848 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.031 0.969 38 H 0.052 0.948 39 H 0.204 0.796 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.494 -21.667 8.284 26.348 hybrid contribution 0.229 1.378 -0.375 1.447 sum -12.265 -20.289 7.910 24.993 Atomic orbital electron populations 1.23021 0.79305 1.03998 1.00925 1.87838 1.21478 1.26407 1.94593 1.22994 0.94316 0.85699 0.95701 1.23092 0.93990 1.03129 0.95882 1.22747 0.90465 1.01361 0.99615 1.21240 0.85814 0.81972 0.80897 1.90678 1.68446 1.39494 1.48044 1.48014 1.25936 1.43131 1.17381 1.22108 1.00693 0.92655 0.91683 1.21312 0.86373 0.91532 1.00649 1.21840 0.97471 0.96306 1.00231 1.20702 0.95541 0.86302 0.94669 1.42607 1.06162 1.18625 1.71804 1.19685 0.89493 0.98093 1.30904 0.90493 1.25668 0.98714 1.00218 1.02449 1.69832 1.17842 1.24985 1.49559 0.85055 0.78262 0.77695 0.78233 1.20899 1.22040 1.19452 1.23399 0.93582 1.01354 0.99045 0.93080 0.88197 0.93192 0.89159 0.89849 0.89353 0.84815 0.90422 0.89488 0.90105 0.91658 0.87653 0.91391 0.94488 0.96915 0.94808 0.79638 0.93880 0.89880 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.85 113.37 1.23 1.46 16 2 O -0.38 -6.14 10.63 -148.98 -1.58 -7.73 16 3 C 0.07 1.15 4.38 31.18 0.14 1.28 16 4 C -0.12 -2.45 7.23 31.12 0.22 -2.23 16 5 C -0.12 -2.36 2.73 -11.02 -0.03 -2.39 16 6 C 0.51 14.10 7.20 87.66 0.63 14.73 16 7 O -0.59 -21.82 15.49 -3.02 -0.05 -21.87 16 8 N -0.61 -14.74 2.87 -846.74 -2.43 -17.18 16 9 C 0.07 1.04 10.13 127.77 1.29 2.34 16 10 C 0.12 3.48 5.41 86.38 0.47 3.94 16 11 C -0.12 -4.20 5.65 30.59 0.17 -4.02 16 12 C 0.15 6.60 6.26 86.38 0.54 7.14 16 13 N -0.75 -40.74 5.60 -343.45 -1.92 -42.66 16 14 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 17 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 18 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 C -0.14 -2.28 6.68 31.18 0.21 -2.07 16 23 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.09 1.25 7.87 -2.39 -0.02 1.23 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 2.11 7.45 -2.39 -0.02 2.09 16 29 H 0.13 2.10 7.92 -2.39 -0.02 2.08 16 30 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.09 1.05 5.66 -2.38 -0.01 1.04 16 32 H 0.08 1.14 8.07 -2.38 -0.02 1.12 16 33 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 34 H 0.11 2.33 8.07 -2.38 -0.02 2.31 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.37 21.46 7.67 -92.71 -0.71 20.75 16 40 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 42 H 0.10 1.31 7.60 -2.38 -0.02 1.30 16 Total: -1.00 -75.53 345.78 2.78 -72.74 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.28 Total: 26.31 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.18 Total: 2.16 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -4.07 Total: -120.97 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.63 Total: -29.59 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -75.53 2.78 -72.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276064814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.431 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds