Wall clock time and date at job start Mon Mar 30 2020 01:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 O 1.42904 * 109.46787 * 120.00098 * 2 1 3 5 5 C 1.42899 * 114.00003 * 89.99803 * 4 2 1 6 6 C 1.50702 * 109.47031 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00078 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99750 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99552 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.91182 * 336.24587 * 9 8 6 11 11 C 1.53778 * 113.61560 * 107.49938 * 9 8 6 12 12 C 1.53778 * 87.08449 * 89.11214 * 11 9 8 13 13 H 1.08998 * 113.61879 * 270.88747 * 12 11 9 14 14 C 1.53001 * 113.69389 * 139.99094 * 12 11 9 15 15 N 1.46498 * 109.46735 * 87.46692 * 14 12 11 16 16 C 1.36940 * 119.99450 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00527 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99880 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00317 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99931 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47494 * 89.99460 * 20 18 16 22 22 H 1.48505 * 109.47311 * 209.99920 * 20 18 16 23 23 H 1.48505 * 109.47128 * 329.99551 * 20 18 16 24 24 C 1.53784 * 113.61123 * 204.99529 * 9 8 6 25 25 H 1.08998 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47081 * 300.00159 * 1 2 3 27 27 H 1.08999 * 109.46874 * 59.99784 * 1 2 3 28 28 H 1.09004 * 109.47230 * 239.99457 * 2 1 3 29 29 H 1.08999 * 109.46874 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47310 * 299.99949 * 3 2 1 31 31 H 1.09005 * 109.47006 * 60.00228 * 3 2 1 32 32 H 1.09000 * 109.47221 * 59.99837 * 5 4 2 33 33 H 1.08993 * 109.47409 * 299.99742 * 5 4 2 34 34 H 0.96998 * 120.00189 * 359.97438 * 8 6 5 35 35 H 1.08999 * 113.61526 * 334.56550 * 11 9 8 36 36 H 1.08999 * 113.69218 * 203.67174 * 11 9 8 37 37 H 1.08997 * 109.47307 * 207.46880 * 14 12 11 38 38 H 1.09003 * 109.47172 * 327.46784 * 14 12 11 39 39 H 0.96995 * 120.00713 * 359.97438 * 15 14 12 40 40 H 0.96997 * 120.00440 * 179.97438 * 19 18 16 41 41 H 1.09004 * 113.61451 * 156.33708 * 24 9 8 42 42 H 1.08994 * 113.61477 * 25.43010 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9887 6 6 2.7001 -2.6835 2.2750 7 8 2.8740 -1.9812 3.2483 8 7 2.9550 -4.0052 2.3434 9 6 3.4417 -4.5935 3.5938 10 1 3.9394 -3.8689 4.2381 11 6 2.3907 -5.4467 4.3233 12 6 2.9028 -6.6404 3.5001 13 1 2.3934 -6.7623 2.5442 14 6 2.9913 -7.9437 4.2966 15 7 1.7028 -8.6386 4.2406 16 6 1.5421 -9.8358 4.8857 17 1 2.3652 -10.2679 5.4354 18 6 0.3211 -10.4940 4.8331 19 7 0.1666 -11.6449 5.4527 20 14 -1.1025 -9.7471 3.8818 21 1 -1.0648 -10.2266 2.4768 22 1 -2.3852 -10.1542 4.5096 23 1 -0.9892 -8.2666 3.9027 24 6 4.2417 -5.8915 3.3934 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.9318 -2.2468 0.1987 33 1 1.2537 -2.5434 0.7125 34 1 2.8163 -4.5669 1.5649 35 1 1.3632 -5.1656 4.0921 36 1 2.5721 -5.5445 5.3936 37 1 3.7660 -8.5795 3.8680 38 1 3.2383 -7.7193 5.3342 39 1 0.9634 -8.2504 3.7472 40 1 -0.6867 -12.1047 5.4163 41 1 4.9305 -6.1102 4.2094 42 1 4.7086 -5.9694 2.4116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276948756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:40 Heat of formation + Delta-G solvation = -55.538128 kcal Electronic energy + Delta-G solvation = -20409.907153 eV Core-core repulsion = 17198.057770 eV Total energy + Delta-G solvation = -3211.849383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36692 -38.97156 -37.86994 -34.71693 -33.32857 -33.03378 -31.18608 -28.50835 -27.58614 -26.79432 -25.61240 -23.18151 -21.72025 -21.39099 -21.12272 -19.26769 -17.64589 -17.32034 -17.26547 -16.33259 -15.86083 -15.14672 -14.82230 -14.68049 -14.30102 -14.21227 -13.77808 -13.48205 -13.24259 -12.94204 -12.63621 -12.57985 -12.49539 -12.33387 -12.31888 -11.86681 -11.76456 -11.42015 -11.12323 -10.90785 -10.65010 -10.25995 -10.18455 -10.04365 -9.95282 -9.88294 -9.57897 -9.11664 -8.87237 -7.21432 -5.76384 -3.11366 2.42935 2.54932 3.36662 3.39134 3.44635 3.64629 4.38361 4.54712 4.58029 4.59048 4.63704 4.66897 4.74597 4.77382 4.86695 5.00269 5.01235 5.21013 5.30370 5.40878 5.44604 5.54192 5.62557 5.67705 5.79126 5.81478 5.82948 5.84765 5.94467 6.10208 6.11084 6.25156 6.52332 6.68200 6.75699 6.82130 7.33326 8.00543 8.06447 8.42998 9.22514 9.94997 10.15179 11.42238 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.003239 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.395581 B = 8641.275446 C = 9512.734587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.515 3.485 7 O -0.519 6.519 8 N -0.710 5.710 9 C 0.117 3.883 10 H 0.101 0.899 11 C -0.142 4.142 12 C -0.119 4.119 13 H 0.086 0.914 14 C 0.166 3.834 15 N -0.756 5.756 16 C -0.243 4.243 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.135 4.135 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.027 0.973 38 H 0.029 0.971 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.097 0.903 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 22.933 -14.276 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.300 3.700 7 O -0.393 6.393 8 N -0.363 5.363 9 C 0.012 3.988 10 H 0.119 0.881 11 C -0.180 4.180 12 C -0.138 4.138 13 H 0.104 0.896 14 C 0.039 3.961 15 N -0.401 5.401 16 C -0.373 4.373 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.716 3.284 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.174 4.174 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.192 0.808 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.561 23.368 -13.243 27.429 hybrid contribution -1.381 -0.170 -1.309 1.910 sum 4.180 23.197 -14.552 27.701 Atomic orbital electron populations 1.22323 0.95754 1.02551 1.02854 1.22184 0.93873 0.94047 0.87794 1.21853 1.01918 0.94223 1.02676 1.88072 1.86591 1.17640 1.35291 1.22233 1.01307 0.84271 0.95824 1.20232 0.77893 0.82157 0.89710 1.90732 1.50438 1.60556 1.37589 1.45574 1.68023 1.07918 1.14748 1.21935 0.96467 0.94626 0.85769 0.88074 1.23457 0.98975 0.95346 1.00243 1.22823 0.96092 0.95259 0.99611 0.89591 1.20620 0.88952 0.89909 0.96583 1.42704 1.09668 1.24047 1.63688 1.19085 0.98330 0.94917 1.24976 0.89254 1.24684 0.97459 0.96832 1.00358 1.69699 1.24807 1.16267 1.47568 0.86526 0.83189 0.78680 0.80015 1.21161 1.21743 1.20362 1.23300 0.97085 0.94171 1.02829 0.92409 0.91504 0.91476 0.92032 0.91881 0.91116 0.91550 0.90262 0.90255 0.76451 0.91489 0.88779 0.95494 0.95355 0.80751 0.93084 0.88420 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.53 37.16 0.35 -0.87 16 2 C 0.08 0.60 3.34 -26.73 -0.09 0.51 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.65 16 4 O -0.36 -4.01 9.52 -55.14 -0.52 -4.53 16 5 C 0.04 0.39 6.23 36.01 0.22 0.61 16 6 C 0.52 6.32 7.91 -10.98 -0.09 6.23 16 7 O -0.52 -8.81 16.10 -14.35 -0.23 -9.05 16 8 N -0.71 -7.36 5.26 -53.02 -0.28 -7.64 16 9 C 0.12 1.39 4.32 -67.12 -0.29 1.10 16 10 H 0.10 1.31 7.47 -51.93 -0.39 0.93 16 11 C -0.14 -1.97 7.43 -25.92 -0.19 -2.16 16 12 C -0.12 -1.68 3.63 -89.81 -0.33 -2.00 16 13 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.17 3.12 6.10 -4.04 -0.02 3.10 16 15 N -0.76 -17.95 5.41 -59.91 -0.32 -18.27 16 16 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 18 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 19 N -0.94 -29.63 13.97 55.49 0.78 -28.86 16 20 Si 0.89 22.21 27.74 -169.99 -4.71 17.49 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 24 C -0.14 -1.49 7.39 -25.91 -0.19 -1.68 16 25 H 0.06 0.39 7.87 -51.93 -0.41 -0.01 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.36 7.79 -51.93 -0.40 -0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 34 H 0.40 3.07 8.70 -40.82 -0.36 2.72 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 39 H 0.36 8.33 5.53 -40.82 -0.23 8.10 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 41 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -35.52 346.94 -7.84 -43.35 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.24 Total: 5.22 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.52 Total: -2.94 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.17 Total: -54.77 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.76 Total: -13.58 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.52 -7.84 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276948756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.185 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds