Wall clock time and date at job start Mon Mar 30 2020 01:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 O 1.42904 * 109.46787 * 120.00098 * 2 1 3 5 5 C 1.42899 * 114.00003 * 89.99803 * 4 2 1 6 6 C 1.50702 * 109.47031 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00078 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99750 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99552 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.91182 * 336.24587 * 9 8 6 11 11 C 1.53778 * 113.61560 * 107.49938 * 9 8 6 12 12 C 1.53778 * 87.08449 * 89.11214 * 11 9 8 13 13 H 1.08998 * 113.61879 * 270.88747 * 12 11 9 14 14 C 1.53001 * 113.69389 * 139.99094 * 12 11 9 15 15 N 1.46498 * 109.46735 * 87.46692 * 14 12 11 16 16 C 1.36940 * 119.99450 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00527 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99880 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00317 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99931 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47494 * 89.99460 * 20 18 16 22 22 H 1.48505 * 109.47311 * 209.99920 * 20 18 16 23 23 H 1.48505 * 109.47128 * 329.99551 * 20 18 16 24 24 C 1.53784 * 113.61123 * 204.99529 * 9 8 6 25 25 H 1.08998 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47081 * 300.00159 * 1 2 3 27 27 H 1.08999 * 109.46874 * 59.99784 * 1 2 3 28 28 H 1.09004 * 109.47230 * 239.99457 * 2 1 3 29 29 H 1.08999 * 109.46874 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47310 * 299.99949 * 3 2 1 31 31 H 1.09005 * 109.47006 * 60.00228 * 3 2 1 32 32 H 1.09000 * 109.47221 * 59.99837 * 5 4 2 33 33 H 1.08993 * 109.47409 * 299.99742 * 5 4 2 34 34 H 0.96998 * 120.00189 * 359.97438 * 8 6 5 35 35 H 1.08999 * 113.61526 * 334.56550 * 11 9 8 36 36 H 1.08999 * 113.69218 * 203.67174 * 11 9 8 37 37 H 1.08997 * 109.47307 * 207.46880 * 14 12 11 38 38 H 1.09003 * 109.47172 * 327.46784 * 14 12 11 39 39 H 0.96995 * 120.00713 * 359.97438 * 15 14 12 40 40 H 0.96997 * 120.00440 * 179.97438 * 19 18 16 41 41 H 1.09004 * 113.61451 * 156.33708 * 24 9 8 42 42 H 1.08994 * 113.61477 * 25.43010 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9887 6 6 2.7001 -2.6835 2.2750 7 8 2.8740 -1.9812 3.2483 8 7 2.9550 -4.0052 2.3434 9 6 3.4417 -4.5935 3.5938 10 1 3.9394 -3.8689 4.2381 11 6 2.3907 -5.4467 4.3233 12 6 2.9028 -6.6404 3.5001 13 1 2.3934 -6.7623 2.5442 14 6 2.9913 -7.9437 4.2966 15 7 1.7028 -8.6386 4.2406 16 6 1.5421 -9.8358 4.8857 17 1 2.3652 -10.2679 5.4354 18 6 0.3211 -10.4940 4.8331 19 7 0.1666 -11.6449 5.4527 20 14 -1.1025 -9.7471 3.8818 21 1 -1.0648 -10.2266 2.4768 22 1 -2.3852 -10.1542 4.5096 23 1 -0.9892 -8.2666 3.9027 24 6 4.2417 -5.8915 3.3934 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.9318 -2.2468 0.1987 33 1 1.2537 -2.5434 0.7125 34 1 2.8163 -4.5669 1.5649 35 1 1.3632 -5.1656 4.0921 36 1 2.5721 -5.5445 5.3936 37 1 3.7660 -8.5795 3.8680 38 1 3.2383 -7.7193 5.3342 39 1 0.9634 -8.2504 3.7472 40 1 -0.6867 -12.1047 5.4163 41 1 4.9305 -6.1102 4.2094 42 1 4.7086 -5.9694 2.4116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276948756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:39 Heat of formation + Delta-G solvation = -80.948168 kcal Electronic energy + Delta-G solvation = -20411.009015 eV Core-core repulsion = 17198.057770 eV Total energy + Delta-G solvation = -3212.951245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33352 -39.85447 -38.74637 -36.48349 -34.50424 -33.70294 -33.16458 -29.54603 -28.31635 -27.91815 -26.63652 -24.85267 -22.99350 -22.25871 -22.03592 -20.49379 -19.48090 -18.27000 -17.94512 -17.11699 -16.81389 -16.58257 -16.01506 -15.94405 -15.52646 -15.33006 -14.97942 -14.66176 -14.42617 -13.95852 -13.90534 -13.54043 -13.49292 -13.34618 -13.06686 -13.00295 -12.90330 -12.71574 -12.35601 -12.17880 -11.87963 -11.72080 -11.63958 -11.41373 -11.19902 -10.91618 -10.86955 -10.65014 -10.07141 -9.27818 -8.03136 -5.36192 1.36637 1.41168 1.48604 1.52809 1.78821 2.48273 2.99111 3.27526 3.47247 3.57802 3.70806 3.86341 3.93073 4.01072 4.10221 4.11381 4.20059 4.28372 4.32823 4.53786 4.72005 4.74306 4.82098 4.85111 4.89335 4.90100 4.90899 4.94282 4.99078 5.12320 5.25502 5.28873 5.32591 5.33844 5.64999 5.76354 6.16158 6.21313 6.55097 7.08495 7.21507 7.85707 8.04739 9.18659 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.003239 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.395581 B = 8641.275446 C = 9512.734587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 C -0.150 4.150 4 O -0.395 6.395 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.575 6.575 8 N -0.696 5.696 9 C 0.124 3.876 10 H 0.089 0.911 11 C -0.147 4.147 12 C -0.113 4.113 13 H 0.099 0.901 14 C 0.161 3.839 15 N -0.758 5.758 16 C -0.236 4.236 17 H 0.054 0.946 18 C -0.069 4.069 19 N -0.986 5.986 20 Si 0.960 3.040 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.253 1.253 24 C -0.115 4.115 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.418 0.582 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.028 0.972 38 H 0.021 0.979 39 H 0.366 0.634 40 H 0.258 0.742 41 H 0.103 0.897 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 24.463 -17.300 30.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 C -0.207 4.207 4 O -0.314 6.314 5 C -0.034 4.034 6 C 0.298 3.702 7 O -0.454 6.454 8 N -0.349 5.349 9 C 0.018 3.982 10 H 0.107 0.893 11 C -0.186 4.186 12 C -0.132 4.132 13 H 0.117 0.883 14 C 0.035 3.965 15 N -0.404 5.404 16 C -0.367 4.367 17 H 0.072 0.928 18 C -0.260 4.260 19 N -0.637 5.637 20 Si 0.787 3.213 21 H -0.199 1.199 22 H -0.224 1.224 23 H -0.177 1.177 24 C -0.154 4.154 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.199 0.801 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.445 24.914 -16.318 30.276 hybrid contribution -1.242 -0.668 -0.308 1.443 sum 4.203 24.246 -16.626 29.698 Atomic orbital electron populations 1.22322 0.95428 1.02656 1.02941 1.22415 0.94188 0.94238 0.87618 1.21891 1.01666 0.94145 1.03017 1.88038 1.87074 1.18863 1.37455 1.22369 1.03203 0.83436 0.94381 1.20952 0.76785 0.82223 0.90284 1.90709 1.53010 1.61899 1.39783 1.45465 1.67019 1.07722 1.14730 1.21745 0.95683 0.94527 0.86202 0.89287 1.23475 0.99050 0.96061 1.00027 1.22770 0.98624 0.92538 0.99259 0.88276 1.20823 0.86702 0.91803 0.97135 1.42727 1.11715 1.22814 1.63095 1.19079 0.97265 0.96339 1.24022 0.92775 1.25577 1.00765 0.97485 1.02144 1.69893 1.25577 1.18282 1.49905 0.85337 0.78459 0.79063 0.78478 1.19947 1.22444 1.17741 1.23216 0.95644 0.91928 1.04589 0.92273 0.93274 0.89534 0.89593 0.92298 0.88829 0.93153 0.86855 0.87971 0.74434 0.92431 0.89788 0.95432 0.96088 0.80104 0.93346 0.87902 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.53 71.98 0.69 -1.39 16 2 C 0.07 0.94 3.34 30.59 0.10 1.04 16 3 C -0.15 -1.80 9.56 71.98 0.69 -1.11 16 4 O -0.39 -8.26 9.52 -129.94 -1.24 -9.49 16 5 C 0.05 0.68 6.23 71.24 0.44 1.12 16 6 C 0.51 11.62 7.91 87.66 0.69 12.31 16 7 O -0.58 -19.50 16.10 16.03 0.26 -19.24 16 8 N -0.70 -12.51 5.26 -440.04 -2.32 -14.82 16 9 C 0.12 2.70 4.32 45.52 0.20 2.90 16 10 H 0.09 2.23 7.47 -2.39 -0.02 2.22 16 11 C -0.15 -3.88 7.43 31.12 0.23 -3.65 16 12 C -0.11 -2.90 3.63 -10.27 -0.04 -2.94 16 13 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 14 C 0.16 5.85 6.10 86.38 0.53 6.38 16 15 N -0.76 -35.14 5.41 -343.45 -1.86 -37.00 16 16 C -0.24 -13.62 10.47 84.03 0.88 -12.74 16 17 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 19 N -0.99 -63.87 13.97 21.65 0.30 -63.56 16 20 Si 0.96 45.45 27.74 68.60 1.90 47.35 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 23 H -0.25 -10.80 6.52 99.48 0.65 -10.15 16 24 C -0.12 -2.18 7.39 31.12 0.23 -1.95 16 25 H 0.06 0.67 7.87 -2.39 -0.02 0.65 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 0.68 7.79 -2.38 -0.02 0.67 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.11 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.10 1.06 7.87 -2.39 -0.02 1.04 16 34 H 0.42 4.70 8.70 -92.71 -0.81 3.89 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.37 7.90 -2.39 -0.02 2.35 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.02 0.80 7.85 -2.39 -0.02 0.78 16 39 H 0.37 16.03 5.53 -92.71 -0.51 15.52 16 40 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.10 1.90 8.10 -2.39 -0.02 1.88 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -79.59 346.94 1.78 -77.81 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.38 Total: 22.60 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 5.11 Total: -3.64 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -3.87 Total: -115.39 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.98 Total: -28.73 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Total: -79.59 1.78 -77.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276948756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.140 kcal (2) G-P(sol) polarization free energy of solvation -79.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds