Wall clock time and date at job start Mon Mar 30 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42903 * 113.99791 * 2 1 4 4 C 1.53005 * 109.47354 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46797 * 64.99635 * 4 3 2 6 6 C 1.36933 * 120.00571 * 269.99973 * 5 4 3 7 7 H 1.07999 * 120.00283 * 141.82993 * 6 5 4 8 8 C 1.38814 * 120.00131 * 321.83778 * 6 5 4 9 9 N 1.31612 * 120.00308 * 157.02614 * 8 6 5 10 10 Si 1.86804 * 119.99844 * 337.03157 * 8 6 5 11 11 H 1.48500 * 109.47272 * 95.45310 * 10 8 6 12 12 H 1.48494 * 109.47003 * 215.45422 * 10 8 6 13 13 H 1.48497 * 109.46836 * 335.45347 * 10 8 6 14 14 C 1.46502 * 119.99593 * 90.00534 * 5 4 3 15 15 C 1.53044 * 109.46124 * 124.70442 * 14 5 4 16 16 C 1.53188 * 109.31536 * 181.38111 * 15 14 5 17 17 N 1.46924 * 108.77699 * 305.36805 * 16 15 14 18 18 C 1.34777 * 120.62939 * 233.58342 * 17 16 15 19 19 C 1.50702 * 120.00103 * 180.27638 * 18 17 16 20 20 O 1.21284 * 120.00043 * 359.97438 * 18 17 16 21 21 C 1.46924 * 118.73886 * 53.85837 * 17 16 15 22 22 C 1.53044 * 109.45909 * 244.76776 * 14 5 4 23 23 H 1.09002 * 109.47450 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47616 * 299.99909 * 1 2 3 25 25 H 1.09006 * 109.47523 * 60.00204 * 1 2 3 26 26 H 1.08997 * 109.47061 * 59.99851 * 3 2 1 27 27 H 1.08996 * 109.47488 * 299.99703 * 3 2 1 28 28 H 1.08996 * 109.46967 * 305.00459 * 4 3 2 29 29 H 1.08994 * 109.47555 * 185.00072 * 4 3 2 30 30 H 0.97000 * 120.00421 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.46506 * 4.72905 * 14 5 4 32 32 H 1.09000 * 109.49498 * 61.43050 * 15 14 5 33 33 H 1.08996 * 109.52477 * 301.35245 * 15 14 5 34 34 H 1.09000 * 109.58865 * 185.57485 * 16 15 14 35 35 H 1.09007 * 109.70123 * 65.22249 * 16 15 14 36 36 H 1.08997 * 109.46967 * 179.72702 * 19 18 17 37 37 H 1.09000 * 109.46660 * 299.72136 * 19 18 17 38 38 H 1.09001 * 109.47298 * 59.71888 * 19 18 17 39 39 H 1.08993 * 109.58914 * 65.92885 * 21 17 16 40 40 H 1.08999 * 109.58432 * 186.35535 * 21 17 16 41 41 H 1.08993 * 109.49869 * 298.57015 * 22 14 5 42 42 H 1.09000 * 109.49443 * 58.66711 * 22 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.0978 -0.7973 -1.3345 7 1 3.8141 -1.3101 -2.2417 8 6 4.5852 -1.5185 -0.2531 9 7 4.2967 -2.7967 -0.1307 10 14 5.6505 -0.6745 1.0285 11 1 4.8030 -0.2382 2.1672 12 1 6.6839 -1.6232 1.5156 13 1 6.3114 0.5086 0.4214 14 6 4.2882 1.3999 -2.4130 15 6 5.7094 1.0967 -2.8928 16 6 6.0442 1.9968 -4.0863 17 7 5.0099 1.8222 -5.1150 18 6 5.3469 1.5043 -6.3807 19 6 4.2748 1.3347 -7.4261 20 8 6.5135 1.3599 -6.6795 21 6 3.6015 2.0069 -4.7393 22 6 3.2938 1.1011 -3.5373 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.6884 1.8464 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8507 0.5686 0.8426 29 1 3.9784 2.1766 0.0902 30 1 4.6370 -3.3006 0.6251 31 1 4.2156 2.4512 -2.1342 32 1 5.7760 0.0516 -3.1953 33 1 6.4153 1.2870 -2.0843 34 1 7.0157 1.7172 -4.4937 35 1 6.0685 3.0383 -3.7656 36 1 4.7355 1.0854 -8.3819 37 1 3.6001 0.5323 -7.1277 38 1 3.7132 2.2637 -7.5246 39 1 3.4290 3.0486 -4.4691 40 1 2.9609 1.7338 -5.5778 41 1 3.3831 0.0561 -3.8337 42 1 2.2799 1.2951 -3.1873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277398114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:10 Heat of formation + Delta-G solvation = -51.749108 kcal Electronic energy + Delta-G solvation = -22379.276514 eV Core-core repulsion = 19167.591436 eV Total energy + Delta-G solvation = -3211.685079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86627 -37.79655 -36.87506 -35.06231 -32.17100 -31.40094 -30.80162 -29.29485 -28.14331 -25.70231 -24.87604 -23.13632 -22.69088 -21.28722 -19.95507 -18.69718 -16.98754 -16.38862 -15.87652 -15.62483 -15.36723 -15.22082 -14.74059 -14.32905 -14.10387 -13.66350 -13.57340 -13.12133 -13.00211 -12.71732 -12.32140 -12.24717 -12.06227 -11.95394 -11.74918 -11.52599 -11.39057 -10.77907 -10.71315 -10.67094 -10.52289 -10.27973 -9.91934 -9.71040 -9.58252 -9.39727 -8.88664 -8.45301 -8.31662 -6.76258 -5.86158 -3.26996 2.80266 3.24469 3.37051 3.52141 3.54463 4.54239 4.62731 4.72090 4.84754 5.07190 5.24551 5.36470 5.41130 5.43281 5.49293 5.61128 5.67772 5.69427 5.76648 5.83455 5.88029 5.91637 5.95217 6.04164 6.11078 6.14292 6.17942 6.19419 6.27743 6.45853 6.58857 6.73012 6.80321 7.01408 7.08393 7.62708 7.96255 8.17576 8.35382 8.50284 9.06504 9.83865 10.19861 11.30003 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018875 B = 0.006559 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.075283 B = 4268.074754 C = 4995.604288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.048 3.952 4 C 0.134 3.866 5 N -0.593 5.593 6 C -0.246 4.246 7 H 0.075 0.925 8 C 0.044 3.956 9 N -0.897 5.897 10 Si 0.869 3.131 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.179 3.821 15 C -0.137 4.137 16 C 0.112 3.888 17 N -0.607 5.607 18 C 0.510 3.490 19 C -0.173 4.173 20 O -0.558 6.558 21 C 0.108 3.892 22 C -0.141 4.141 23 H 0.078 0.922 24 H 0.025 0.975 25 H 0.028 0.972 26 H 0.026 0.974 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.259 0.741 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 12.010 -6.454 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C -0.032 4.032 4 C 0.008 3.992 5 N -0.314 5.314 6 C -0.375 4.375 7 H 0.092 0.908 8 C -0.156 4.156 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.196 1.196 14 C 0.072 3.928 15 C -0.177 4.177 16 C -0.011 4.011 17 N -0.340 5.340 18 C 0.299 3.701 19 C -0.232 4.232 20 O -0.437 6.437 21 C -0.015 4.015 22 C -0.181 4.181 23 H 0.096 0.904 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.782 11.589 -6.510 14.126 hybrid contribution 0.117 0.578 1.007 1.167 sum -4.665 12.167 -5.502 14.145 Atomic orbital electron populations 1.22635 0.83898 1.01837 0.98190 1.88316 1.16800 1.26453 1.94766 1.23276 0.97449 0.85050 0.97413 1.21339 0.90297 0.96460 0.91079 1.44107 1.75920 1.03722 1.07672 1.18431 1.37215 0.79685 1.02141 0.90795 1.25344 0.97906 0.94733 0.97603 1.69878 1.44850 1.08456 1.30603 0.87058 0.81472 0.79380 0.82100 1.21670 1.23235 1.19564 1.20325 0.91647 0.93125 0.87688 1.22287 0.98689 1.00889 0.95811 1.21687 0.91855 0.99194 0.88350 1.48183 1.07985 1.68847 1.08991 1.20742 0.90207 0.75946 0.83189 1.21922 0.98896 1.03839 0.98562 1.90681 1.20611 1.51703 1.80665 1.21937 0.81014 0.99836 0.98749 1.22455 1.00301 1.00368 0.94938 0.90365 0.95651 0.95313 0.95598 0.94601 0.91972 0.92935 0.93064 0.93266 0.90327 0.91325 0.89640 0.92285 0.89403 0.89297 0.89734 0.91831 0.90260 0.90792 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.45 10.18 -35.23 -0.36 -7.81 16 3 C 0.05 0.88 6.28 37.16 0.23 1.11 16 4 C 0.13 2.76 4.93 -4.04 -0.02 2.74 16 5 N -0.59 -13.02 1.98 -165.61 -0.33 -13.35 16 6 C -0.25 -6.54 8.05 -15.06 -0.12 -6.66 16 7 H 0.07 2.17 7.24 -52.49 -0.38 1.79 16 8 C 0.04 1.26 5.29 -17.43 -0.09 1.17 16 9 N -0.90 -27.42 13.97 55.49 0.78 -26.64 16 10 Si 0.87 22.02 25.12 -169.99 -4.27 17.75 16 11 H -0.29 -7.21 6.67 56.52 0.38 -6.83 16 12 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.18 3.20 2.60 -67.88 -0.18 3.02 16 15 C -0.14 -2.48 5.23 -26.61 -0.14 -2.62 16 16 C 0.11 1.73 6.43 -3.71 -0.02 1.70 16 17 N -0.61 -8.79 2.97 -172.51 -0.51 -9.30 16 18 C 0.51 7.71 7.81 -10.98 -0.09 7.63 16 19 C -0.17 -1.78 8.67 36.01 0.31 -1.46 16 20 O -0.56 -10.68 16.50 5.55 0.09 -10.59 16 21 C 0.11 1.31 6.37 -3.49 -0.02 1.29 16 22 C -0.14 -2.22 5.39 -26.38 -0.14 -2.36 16 23 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.46 3.40 -51.93 -0.18 1.29 16 29 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.05 0.79 7.77 -51.93 -0.40 0.38 16 32 H 0.08 1.66 7.62 -51.93 -0.40 1.27 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.43 7.01 -51.93 -0.36 1.06 16 35 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.09 0.83 7.70 -51.93 -0.40 0.43 16 38 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.78 5.94 -51.93 -0.31 0.47 16 41 H 0.07 1.38 7.24 -51.93 -0.38 1.01 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 329.06 15.07 4.96 4.96 Total: -1.00 -33.31 329.06 -5.82 -39.12 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.01 Total: -1.33 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 0.84 Total: 7.19 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.06 Total: -49.30 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.27 Total: -18.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.27 Total: 17.75 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.31 -5.82 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277398114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.624 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds