Wall clock time and date at job start Mon Mar 30 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42903 * 113.99791 * 2 1 4 4 C 1.53005 * 109.47354 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46797 * 64.99635 * 4 3 2 6 6 C 1.36933 * 120.00571 * 269.99973 * 5 4 3 7 7 H 1.07999 * 120.00283 * 141.82993 * 6 5 4 8 8 C 1.38814 * 120.00131 * 321.83778 * 6 5 4 9 9 N 1.31612 * 120.00308 * 157.02614 * 8 6 5 10 10 Si 1.86804 * 119.99844 * 337.03157 * 8 6 5 11 11 H 1.48500 * 109.47272 * 95.45310 * 10 8 6 12 12 H 1.48494 * 109.47003 * 215.45422 * 10 8 6 13 13 H 1.48497 * 109.46836 * 335.45347 * 10 8 6 14 14 C 1.46502 * 119.99593 * 90.00534 * 5 4 3 15 15 C 1.53044 * 109.46124 * 124.70442 * 14 5 4 16 16 C 1.53188 * 109.31536 * 181.38111 * 15 14 5 17 17 N 1.46924 * 108.77699 * 305.36805 * 16 15 14 18 18 C 1.34777 * 120.62939 * 233.58342 * 17 16 15 19 19 C 1.50702 * 120.00103 * 180.27638 * 18 17 16 20 20 O 1.21284 * 120.00043 * 359.97438 * 18 17 16 21 21 C 1.46924 * 118.73886 * 53.85837 * 17 16 15 22 22 C 1.53044 * 109.45909 * 244.76776 * 14 5 4 23 23 H 1.09002 * 109.47450 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47616 * 299.99909 * 1 2 3 25 25 H 1.09006 * 109.47523 * 60.00204 * 1 2 3 26 26 H 1.08997 * 109.47061 * 59.99851 * 3 2 1 27 27 H 1.08996 * 109.47488 * 299.99703 * 3 2 1 28 28 H 1.08996 * 109.46967 * 305.00459 * 4 3 2 29 29 H 1.08994 * 109.47555 * 185.00072 * 4 3 2 30 30 H 0.97000 * 120.00421 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.46506 * 4.72905 * 14 5 4 32 32 H 1.09000 * 109.49498 * 61.43050 * 15 14 5 33 33 H 1.08996 * 109.52477 * 301.35245 * 15 14 5 34 34 H 1.09000 * 109.58865 * 185.57485 * 16 15 14 35 35 H 1.09007 * 109.70123 * 65.22249 * 16 15 14 36 36 H 1.08997 * 109.46967 * 179.72702 * 19 18 17 37 37 H 1.09000 * 109.46660 * 299.72136 * 19 18 17 38 38 H 1.09001 * 109.47298 * 59.71888 * 19 18 17 39 39 H 1.08993 * 109.58914 * 65.92885 * 21 17 16 40 40 H 1.08999 * 109.58432 * 186.35535 * 21 17 16 41 41 H 1.08993 * 109.49869 * 298.57015 * 22 14 5 42 42 H 1.09000 * 109.49443 * 58.66711 * 22 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.0978 -0.7973 -1.3345 7 1 3.8141 -1.3101 -2.2417 8 6 4.5852 -1.5185 -0.2531 9 7 4.2967 -2.7967 -0.1307 10 14 5.6505 -0.6745 1.0285 11 1 4.8030 -0.2382 2.1672 12 1 6.6839 -1.6232 1.5156 13 1 6.3114 0.5086 0.4214 14 6 4.2882 1.3999 -2.4130 15 6 5.7094 1.0967 -2.8928 16 6 6.0442 1.9968 -4.0863 17 7 5.0099 1.8222 -5.1150 18 6 5.3469 1.5043 -6.3807 19 6 4.2748 1.3347 -7.4261 20 8 6.5135 1.3599 -6.6795 21 6 3.6015 2.0069 -4.7393 22 6 3.2938 1.1011 -3.5373 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.6884 1.8464 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8507 0.5686 0.8426 29 1 3.9784 2.1766 0.0902 30 1 4.6370 -3.3006 0.6251 31 1 4.2156 2.4512 -2.1342 32 1 5.7760 0.0516 -3.1953 33 1 6.4153 1.2870 -2.0843 34 1 7.0157 1.7172 -4.4937 35 1 6.0685 3.0383 -3.7656 36 1 4.7355 1.0854 -8.3819 37 1 3.6001 0.5323 -7.1277 38 1 3.7132 2.2637 -7.5246 39 1 3.4290 3.0486 -4.4691 40 1 2.9609 1.7338 -5.5778 41 1 3.3831 0.0561 -3.8337 42 1 2.2799 1.2951 -3.1873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277398114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:10 Heat of formation + Delta-G solvation = -75.882908 kcal Electronic energy + Delta-G solvation = -22380.323035 eV Core-core repulsion = 19167.591436 eV Total energy + Delta-G solvation = -3212.731599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08198 -39.28374 -38.27622 -36.59964 -33.90129 -32.99855 -32.09903 -30.44983 -29.60960 -27.12834 -26.43617 -24.63396 -23.99367 -22.79562 -21.46365 -19.98770 -18.43782 -18.00826 -17.38499 -17.04255 -16.73022 -16.42634 -16.33246 -15.92220 -15.59740 -14.98365 -14.93966 -14.57842 -14.44601 -14.14543 -13.81147 -13.49437 -13.40010 -13.18381 -12.98755 -12.85588 -12.82248 -12.48906 -12.28704 -12.15604 -12.07367 -11.81209 -11.66420 -11.34932 -11.11790 -10.82005 -10.47849 -10.28999 -9.59739 -8.61482 -8.04369 -5.39132 1.32958 1.43283 1.52017 1.66021 2.15324 2.52349 3.11879 3.18767 3.47069 3.72275 3.99872 4.16271 4.24689 4.30680 4.40405 4.45019 4.47166 4.52512 4.60063 4.62100 4.65179 4.66623 4.71013 4.73954 4.80361 4.84417 4.89821 4.91993 5.04666 5.08749 5.17186 5.24714 5.48277 5.59674 5.67833 6.08659 6.32672 6.51325 6.64944 7.15155 7.20954 7.80188 8.18327 9.16770 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018875 B = 0.006559 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.075283 B = 4268.074754 C = 4995.604288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.207 4.207 7 H 0.031 0.969 8 C -0.020 4.020 9 N -0.954 5.954 10 Si 0.931 3.069 11 H -0.282 1.282 12 H -0.322 1.322 13 H -0.252 1.252 14 C 0.173 3.827 15 C -0.129 4.129 16 C 0.119 3.881 17 N -0.610 5.610 18 C 0.499 3.501 19 C -0.164 4.164 20 O -0.608 6.608 21 C 0.115 3.885 22 C -0.132 4.132 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.031 0.969 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.156 16.009 -7.053 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.337 4.337 7 H 0.048 0.952 8 C -0.215 4.215 9 N -0.600 5.600 10 Si 0.762 3.238 11 H -0.210 1.210 12 H -0.252 1.252 13 H -0.176 1.176 14 C 0.067 3.933 15 C -0.169 4.169 16 C -0.004 4.004 17 N -0.342 5.342 18 C 0.290 3.710 19 C -0.223 4.223 20 O -0.491 6.491 21 C -0.007 4.007 22 C -0.172 4.172 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.050 0.950 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.432 15.663 -7.115 18.366 hybrid contribution 0.534 -0.639 1.122 1.397 sum -5.898 15.025 -5.993 17.217 Atomic orbital electron populations 1.22766 0.81476 1.02233 1.00214 1.88237 1.19718 1.28687 1.95230 1.23246 0.95551 0.84357 0.99729 1.21505 0.92415 0.97407 0.88843 1.44227 1.76413 1.02312 1.09561 1.18156 1.33830 0.82030 0.99708 0.95175 1.25908 1.00004 0.95206 1.00349 1.70025 1.47631 1.10397 1.31940 0.86041 0.79364 0.78358 0.80085 1.20982 1.25163 1.17587 1.20620 0.91590 0.94248 0.86817 1.22164 0.99137 0.98830 0.96803 1.21528 0.91487 1.00031 0.87361 1.48342 1.08820 1.68308 1.08723 1.21674 0.90601 0.74653 0.84046 1.21947 0.97616 1.06020 0.96748 1.90659 1.23042 1.53853 1.81549 1.22096 0.79833 1.00728 0.98080 1.22298 1.00102 0.98908 0.95881 0.90994 0.93315 0.93366 0.92814 0.92421 0.95148 0.89070 0.93776 0.89459 0.94935 0.92249 0.91629 0.88997 0.89246 0.88132 0.86200 0.88290 0.87197 0.94980 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.40 -16.75 10.18 -148.98 -1.52 -18.26 16 3 C 0.05 1.67 6.28 71.98 0.45 2.12 16 4 C 0.12 4.74 4.93 86.38 0.43 5.17 16 5 N -0.60 -25.82 1.98 -677.87 -1.34 -27.16 16 6 C -0.21 -11.35 8.05 84.03 0.68 -10.67 16 7 H 0.03 1.91 7.24 -2.91 -0.02 1.89 16 8 C -0.02 -1.17 5.29 84.86 0.45 -0.72 16 9 N -0.95 -61.55 13.97 21.65 0.30 -61.25 16 10 Si 0.93 46.86 25.12 68.60 1.72 48.59 16 11 H -0.28 -13.73 6.67 99.48 0.66 -13.07 16 12 H -0.32 -16.94 7.11 99.48 0.71 -16.23 16 13 H -0.25 -11.67 7.11 99.48 0.71 -10.97 16 14 C 0.17 5.76 2.60 45.02 0.12 5.88 16 15 C -0.13 -4.63 5.23 30.67 0.16 -4.46 16 16 C 0.12 3.48 6.43 86.36 0.56 4.03 16 17 N -0.61 -16.14 2.97 -818.07 -2.43 -18.57 16 18 C 0.50 14.23 7.81 87.66 0.68 14.92 16 19 C -0.16 -2.84 8.67 71.24 0.62 -2.23 16 20 O -0.61 -23.29 16.50 -3.04 -0.05 -23.34 16 21 C 0.11 2.28 6.37 86.51 0.55 2.83 16 22 C -0.13 -3.86 5.39 30.82 0.17 -3.70 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.03 1.38 3.40 -2.39 -0.01 1.37 16 29 H 0.09 2.77 7.88 -2.39 -0.02 2.76 16 30 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.09 2.32 7.77 -2.39 -0.02 2.31 16 32 H 0.03 1.43 7.62 -2.39 -0.02 1.41 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.19 7.01 -2.39 -0.02 2.18 16 35 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.10 1.55 7.70 -2.39 -0.02 1.53 16 38 H 0.12 1.25 7.93 -2.39 -0.02 1.24 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.11 1.58 5.94 -2.39 -0.01 1.56 16 41 H 0.03 1.20 7.24 -2.39 -0.02 1.18 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -79.19 329.06 3.73 -75.45 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.94 Total: 9.21 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 6.10 Total: 15.32 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.47 Total: -106.97 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.57 Total: -41.60 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.72 Total: 48.59 kcal Total: -79.19 3.73 -75.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277398114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.428 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds