Wall clock time and date at job start Mon Mar 30 2020 01:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47224 * 2 1 4 4 C 1.42896 * 114.00119 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47328 * 30.00053 * 4 3 2 6 6 C 1.53003 * 109.46950 * 270.00188 * 4 3 2 7 7 C 1.50698 * 109.47114 * 150.00351 * 4 3 2 8 8 O 1.21281 * 119.99798 * 4.99502 * 7 4 3 9 9 N 1.34778 * 120.00309 * 185.00092 * 7 4 3 10 10 C 1.47427 * 125.64522 * 5.16434 * 9 7 4 11 11 C 1.54900 * 104.83259 * 155.89588 * 10 9 7 12 12 C 1.55160 * 101.58236 * 37.00840 * 11 10 9 13 13 C 1.47016 * 125.65178 * 185.19239 * 9 7 4 14 14 H 1.09000 * 110.01124 * 300.52822 * 13 9 7 15 15 C 1.53004 * 109.88288 * 61.61915 * 13 9 7 16 16 N 1.46496 * 109.47241 * 183.39302 * 15 13 9 17 17 C 1.36936 * 120.00267 * 175.01597 * 16 15 13 18 18 H 1.08003 * 119.99750 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99881 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00397 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99499 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46866 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47519 * 299.99564 * 21 19 17 24 24 H 1.48502 * 109.47393 * 60.00085 * 21 19 17 25 25 H 1.09004 * 109.46781 * 299.99170 * 1 2 3 26 26 H 1.08996 * 109.47904 * 59.99830 * 1 2 3 27 27 H 1.09003 * 109.47392 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46781 * 240.00830 * 2 1 3 29 29 H 1.08993 * 109.47392 * 120.00725 * 2 1 3 30 30 H 1.08999 * 109.47253 * 59.99841 * 6 4 3 31 31 H 1.09001 * 109.46842 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.46994 * 300.00069 * 6 4 3 33 33 H 1.09003 * 110.36547 * 37.05222 * 10 9 7 34 34 H 1.09003 * 110.46203 * 274.78442 * 10 9 7 35 35 H 1.09004 * 111.00450 * 278.93574 * 11 10 9 36 36 H 1.09002 * 111.00853 * 155.08597 * 11 10 9 37 37 H 1.09000 * 110.71690 * 206.13316 * 12 11 10 38 38 H 1.08995 * 110.71537 * 82.86282 * 12 11 10 39 39 H 1.08998 * 109.46880 * 63.38945 * 15 13 9 40 40 H 1.08997 * 109.47110 * 303.39284 * 15 13 9 41 41 H 0.97009 * 119.99935 * 355.01656 * 16 15 13 42 42 H 0.96999 * 120.00087 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9398 1.5001 1.4418 7 6 3.8341 2.7265 -0.7109 8 8 2.9855 3.5049 -1.0914 9 7 5.1379 2.9941 -0.9234 10 6 6.2618 2.0921 -0.6127 11 6 7.4027 2.5392 -1.5602 12 6 7.2083 4.0785 -1.5772 13 6 5.6747 4.2340 -1.5029 14 1 5.2685 4.3848 -2.5031 15 6 5.3150 5.4238 -0.6107 16 7 5.7835 6.6627 -1.2365 17 6 5.4841 7.8723 -0.6687 18 1 4.9022 7.9130 0.2402 19 6 5.9275 9.0463 -1.2621 20 7 6.6362 8.9968 -2.3701 21 14 5.5184 10.6964 -0.4879 22 1 6.1040 11.7868 -1.3084 23 1 4.0440 10.8614 -0.4242 24 1 6.0826 10.7527 0.8847 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 3.6481 0.5841 1.9556 31 1 5.0264 1.5866 1.4413 32 1 3.5075 2.3585 1.9559 33 1 5.9847 1.0573 -0.8144 34 1 6.5659 2.2066 0.4277 35 1 7.2707 2.1178 -2.5568 36 1 8.3774 2.2730 -1.1512 37 1 7.5949 4.5059 -2.5024 38 1 7.6849 4.5369 -0.7107 39 1 5.7917 5.3054 0.3624 40 1 4.2335 5.4679 -0.4824 41 1 6.3058 6.6263 -2.0531 42 1 6.9458 9.8172 -2.7848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277813924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:25 Heat of formation + Delta-G solvation = -94.404296 kcal Electronic energy + Delta-G solvation = -21521.196655 eV Core-core repulsion = 18307.661909 eV Total energy + Delta-G solvation = -3213.534747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47084 -39.39684 -38.18943 -36.47261 -34.03136 -33.20498 -32.32996 -31.00067 -30.12526 -26.81210 -26.01453 -24.44458 -23.68859 -23.15418 -21.88758 -20.28993 -19.14245 -18.38394 -17.75249 -17.33240 -16.81091 -16.53517 -16.36003 -15.60011 -15.27489 -15.08567 -14.92773 -14.48023 -14.31572 -14.04650 -13.77660 -13.71561 -13.33981 -13.17893 -13.05323 -12.90066 -12.84652 -12.75386 -12.32100 -12.24293 -12.06691 -12.01339 -11.90916 -11.77962 -11.56324 -11.02989 -10.93309 -10.46026 -9.71532 -9.08406 -8.00389 -5.30676 1.42750 1.47573 1.49887 1.54005 1.69241 2.52239 2.84193 3.31614 3.39889 3.63350 3.78629 3.85657 3.91232 4.01502 4.10756 4.20067 4.27644 4.32640 4.33255 4.46054 4.48681 4.62010 4.69943 4.76154 4.82605 4.87469 4.93701 5.01076 5.03085 5.12320 5.15122 5.19196 5.26573 5.34167 5.39960 5.44356 6.15192 6.21448 6.53208 7.13067 7.27729 7.98222 8.26856 9.22617 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.004372 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.912169 B = 6403.067812 C = 7291.103843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.084 3.916 5 H 0.122 0.878 6 C -0.166 4.166 7 C 0.512 3.488 8 O -0.579 6.579 9 N -0.608 5.608 10 C 0.089 3.911 11 C -0.118 4.118 12 C -0.118 4.118 13 C 0.136 3.864 14 H 0.046 0.954 15 C 0.155 3.845 16 N -0.736 5.736 17 C -0.256 4.256 18 H 0.065 0.935 19 C -0.068 4.068 20 N -0.965 5.965 21 Si 0.977 3.023 22 H -0.287 1.287 23 H -0.283 1.283 24 H -0.273 1.273 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.020 0.980 40 H -0.003 1.003 41 H 0.378 0.622 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 -26.002 6.148 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.318 6.318 4 C 0.024 3.976 5 H 0.139 0.861 6 C -0.223 4.223 7 C 0.301 3.699 8 O -0.458 6.458 9 N -0.343 5.343 10 C -0.032 4.032 11 C -0.156 4.156 12 C -0.156 4.156 13 C 0.032 3.968 14 H 0.065 0.935 15 C 0.027 3.973 16 N -0.380 5.380 17 C -0.387 4.387 18 H 0.083 0.917 19 C -0.261 4.261 20 N -0.615 5.615 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.038 0.962 40 H 0.015 0.985 41 H 0.210 0.790 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.010 -25.369 6.094 26.110 hybrid contribution -0.281 1.468 -0.238 1.514 sum -1.291 -23.901 5.856 24.641 Atomic orbital electron populations 1.21783 0.93448 1.03519 1.02196 1.22859 0.96161 0.82053 1.01786 1.88056 1.19530 1.29005 1.95178 1.21915 0.83314 0.94666 0.97742 0.86096 1.22267 1.03020 1.03877 0.93152 1.21090 0.80936 0.88791 0.79076 1.90731 1.51169 1.51545 1.52334 1.48579 1.05665 1.17885 1.62144 1.22845 0.85135 0.94514 1.00659 1.22829 0.99598 0.92481 1.00678 1.22588 0.90942 0.98760 1.03325 1.21548 0.95969 0.83948 0.95322 0.93532 1.20907 0.95450 0.86077 0.94897 1.42306 1.64600 1.00885 1.30165 1.19519 1.27598 0.85390 1.06237 0.91662 1.25575 1.00941 1.01243 0.98333 1.69794 1.42459 1.27749 1.21466 0.85175 0.77599 0.78964 0.77777 1.21254 1.20978 1.19917 0.92575 0.93500 0.88203 0.91967 0.90647 0.88334 0.88737 0.93856 0.86996 0.89189 0.89744 0.86539 0.90494 0.90785 0.96196 0.98467 0.78973 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.05 0.79 6.47 71.98 0.47 1.25 16 3 O -0.40 -10.93 9.52 -129.99 -1.24 -12.17 16 4 C 0.08 1.92 2.52 29.85 0.08 1.99 16 5 H 0.12 1.72 7.18 -2.39 -0.02 1.71 16 6 C -0.17 -2.86 9.41 71.98 0.68 -2.19 16 7 C 0.51 17.43 6.95 87.66 0.61 18.04 16 8 O -0.58 -27.45 15.70 15.96 0.25 -27.20 16 9 N -0.61 -17.86 3.06 -788.07 -2.41 -20.28 16 10 C 0.09 1.47 5.55 86.85 0.48 1.95 16 11 C -0.12 -1.96 7.08 31.98 0.23 -1.73 16 12 C -0.12 -3.35 6.01 31.78 0.19 -3.16 16 13 C 0.14 5.04 2.94 45.34 0.13 5.18 16 14 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 15 C 0.15 7.34 5.64 86.38 0.49 7.82 16 16 N -0.74 -41.20 5.44 -343.46 -1.87 -43.06 16 17 C -0.26 -15.61 9.99 84.03 0.84 -14.77 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.96 -60.84 13.06 21.65 0.28 -60.55 16 21 Si 0.98 48.41 29.55 68.60 2.03 50.44 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 23 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.85 8.08 -2.38 -0.02 0.83 16 29 H 0.08 0.85 7.87 -2.39 -0.02 0.83 16 30 H 0.10 1.10 7.87 -2.39 -0.02 1.08 16 31 H 0.09 1.24 5.75 -2.39 -0.01 1.23 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.02 7.36 -2.39 -0.02 1.01 16 34 H 0.09 1.21 7.05 -2.39 -0.02 1.20 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 2.25 7.79 -2.39 -0.02 2.23 16 39 H 0.02 0.93 8.06 -2.39 -0.02 0.91 16 40 H 0.00 -0.15 6.93 -2.39 -0.02 -0.17 16 41 H 0.38 21.63 7.40 -92.70 -0.69 20.94 16 42 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -84.23 338.61 2.74 -81.48 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.31 Total: 22.33 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.39 Total: 9.01 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -4.00 Total: -123.90 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.99 Total: -39.37 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -84.23 2.74 -81.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277813924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.920 kcal (2) G-P(sol) polarization free energy of solvation -84.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds