Wall clock time and date at job start Mon Mar 30 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42906 * 109.46868 * 2 1 4 4 C 1.42898 * 113.99643 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.46901 * 329.99659 * 4 3 2 6 6 C 1.53000 * 109.47295 * 89.99967 * 4 3 2 7 7 C 1.50702 * 109.46991 * 210.00183 * 4 3 2 8 8 O 1.21284 * 119.99868 * 359.97438 * 7 4 3 9 9 N 1.34774 * 119.99987 * 179.97438 * 7 4 3 10 10 C 1.47427 * 125.65068 * 4.69046 * 9 7 4 11 11 C 1.54907 * 104.83282 * 204.15012 * 10 9 7 12 12 C 1.55162 * 101.58347 * 322.99103 * 11 10 9 13 13 C 1.47024 * 125.64667 * 184.71796 * 9 7 4 14 14 H 1.08997 * 110.01300 * 59.42697 * 13 9 7 15 15 C 1.52999 * 109.88059 * 298.33395 * 13 9 7 16 16 N 1.46500 * 109.47371 * 178.08487 * 15 13 9 17 17 C 1.36932 * 120.00284 * 174.93099 * 16 15 13 18 18 H 1.07999 * 120.00291 * 359.97438 * 17 16 15 19 19 C 1.38817 * 120.00188 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00303 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46740 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47203 * 119.99887 * 21 19 17 24 24 H 1.48496 * 109.47071 * 240.00010 * 21 19 17 25 25 H 1.08997 * 109.46777 * 59.99813 * 1 2 3 26 26 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46484 * 299.99798 * 1 2 3 28 28 H 1.09003 * 109.46922 * 240.00459 * 2 1 3 29 29 H 1.08997 * 109.47288 * 120.00063 * 2 1 3 30 30 H 1.09001 * 109.46869 * 179.97438 * 6 4 3 31 31 H 1.08996 * 109.46836 * 299.99543 * 6 4 3 32 32 H 1.08998 * 109.46999 * 60.00313 * 6 4 3 33 33 H 1.09000 * 110.36312 * 85.30909 * 10 9 7 34 34 H 1.08996 * 110.45879 * 323.03458 * 10 9 7 35 35 H 1.08993 * 111.00390 * 204.91981 * 11 10 9 36 36 H 1.08998 * 111.00531 * 81.06640 * 11 10 9 37 37 H 1.09003 * 110.71810 * 277.14526 * 12 11 10 38 38 H 1.08993 * 110.87160 * 153.93699 * 12 11 10 39 39 H 1.09002 * 109.47033 * 58.09038 * 15 13 9 40 40 H 1.08995 * 109.47673 * 298.08895 * 15 13 9 41 41 H 0.97003 * 119.99657 * 355.21350 * 16 15 13 42 42 H 0.96997 * 120.00204 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6015 0.5130 6 6 3.9387 1.5006 -1.4433 7 6 3.8348 2.7263 0.7099 8 8 2.9862 3.4601 1.1709 9 7 5.1389 3.0433 0.8330 10 6 6.2641 2.2980 0.2397 11 6 7.4824 2.6422 1.1322 12 6 7.2131 4.1335 1.4655 13 6 5.6752 4.1893 1.5818 14 1 5.3799 4.1219 2.6288 15 6 5.1548 5.4951 0.9776 16 7 5.6574 6.6286 1.7577 17 6 5.4073 7.9096 1.3434 18 1 4.8399 8.0843 0.4413 19 6 5.8841 8.9837 2.0824 20 7 6.5770 8.7708 3.1811 21 14 5.5436 10.7311 1.5168 22 1 4.7502 10.6994 0.2619 23 1 4.7794 11.4512 2.5669 24 1 6.8298 11.4317 1.2723 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.0253 1.5871 -1.4436 31 1 3.6466 0.5848 -1.9570 32 1 3.5061 2.3592 -1.9568 33 1 6.4390 2.6272 -0.7846 34 1 6.0665 1.2264 0.2644 35 1 8.4156 2.5276 0.5808 36 1 7.4880 2.0346 2.0371 37 1 7.5624 4.7781 0.6588 38 1 7.6816 4.4112 2.4096 39 1 4.0649 5.4954 0.9971 40 1 5.4997 5.5816 -0.0527 41 1 6.1709 6.4717 2.5656 42 1 6.9105 9.5212 3.6972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277813927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:29 Heat of formation + Delta-G solvation = -66.450953 kcal Electronic energy + Delta-G solvation = -21520.497310 eV Core-core repulsion = 18308.174711 eV Total energy + Delta-G solvation = -3212.322599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28826 -38.35624 -36.92333 -34.53086 -32.90778 -31.43144 -31.26020 -30.05578 -28.52106 -25.47919 -24.54099 -23.09997 -22.49994 -21.93485 -20.75720 -18.97185 -17.41975 -17.00548 -16.63112 -16.08084 -15.86876 -15.30861 -14.43747 -14.27233 -13.77788 -13.72157 -13.55956 -13.20303 -13.13057 -12.81215 -12.67473 -12.57469 -12.48232 -12.11602 -11.97947 -11.59679 -11.37762 -11.21422 -11.07210 -10.86971 -10.80515 -10.51779 -10.38793 -9.99113 -9.97214 -9.68548 -9.31203 -8.77634 -8.42027 -6.83167 -5.69578 -2.97260 2.70478 2.83333 3.48840 3.54653 3.57174 3.71412 4.40071 4.58014 4.67981 4.68536 4.75885 4.89451 4.92213 4.98494 5.04840 5.11885 5.26914 5.35790 5.42608 5.48613 5.53956 5.59612 5.64695 5.69743 5.82072 5.91558 5.92703 5.94729 6.07628 6.11686 6.22071 6.45403 6.58421 6.85956 6.98115 7.09825 7.68652 7.79099 8.37483 8.49854 9.60574 10.17512 10.53347 11.53680 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.004287 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.486365 B = 6529.645959 C = 7364.712570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.077 3.923 5 H 0.083 0.917 6 C -0.179 4.179 7 C 0.525 3.475 8 O -0.506 6.506 9 N -0.611 5.611 10 C 0.097 3.903 11 C -0.135 4.135 12 C -0.120 4.120 13 C 0.132 3.868 14 H 0.075 0.925 15 C 0.145 3.855 16 N -0.729 5.729 17 C -0.232 4.232 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -22.649 -7.901 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.016 3.984 5 H 0.100 0.900 6 C -0.236 4.236 7 C 0.311 3.689 8 O -0.379 6.379 9 N -0.348 5.348 10 C -0.026 4.026 11 C -0.173 4.173 12 C -0.158 4.158 13 C 0.029 3.971 14 H 0.093 0.907 15 C 0.016 3.984 16 N -0.374 5.374 17 C -0.363 4.363 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.585 5.585 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.216 0.784 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.193 -21.974 -7.763 23.408 hybrid contribution 0.227 0.669 -0.025 0.707 sum -1.966 -21.305 -7.788 22.769 Atomic orbital electron populations 1.21728 0.93451 1.02065 1.03574 1.22573 0.95996 0.83706 0.99865 1.88079 1.18446 1.26076 1.94901 1.21798 0.83524 0.96447 0.96639 0.89964 1.22409 1.02479 1.03606 0.95150 1.19962 0.81200 0.87170 0.80571 1.90774 1.49045 1.50847 1.47256 1.48453 1.04696 1.28773 1.52924 1.22454 0.86622 0.96018 0.97500 1.22818 0.97218 0.97533 0.99769 1.22658 0.93964 0.95257 1.03891 1.21824 0.93259 0.86098 0.95879 0.90679 1.20985 0.97727 0.85557 0.94084 1.42215 1.65234 1.00735 1.29168 1.19273 1.27696 0.83022 1.06306 0.91214 1.24717 1.01046 0.97825 0.97560 1.69670 1.41744 1.29915 1.17138 0.86102 0.77269 0.85063 0.77727 1.20580 1.21886 1.21945 0.91718 0.91136 0.91552 0.93353 0.93367 0.90254 0.91509 0.90951 0.91011 0.90958 0.89938 0.90801 0.89801 0.89729 0.94689 0.96208 0.78367 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.53 6.47 37.16 0.24 0.77 16 3 O -0.36 -4.98 9.52 -55.14 -0.52 -5.51 16 4 C 0.08 0.95 2.49 -27.88 -0.07 0.88 16 5 H 0.08 0.78 7.59 -51.92 -0.39 0.38 16 6 C -0.18 -1.72 9.28 37.16 0.34 -1.37 16 7 C 0.52 8.77 7.13 -10.99 -0.08 8.69 16 8 O -0.51 -11.15 15.34 -14.36 -0.22 -11.37 16 9 N -0.61 -9.16 3.06 -163.02 -0.50 -9.66 16 10 C 0.10 0.99 5.10 -2.53 -0.01 0.98 16 11 C -0.14 -1.37 7.09 -24.58 -0.17 -1.55 16 12 C -0.12 -1.75 6.07 -24.89 -0.15 -1.90 16 13 C 0.13 2.36 2.98 -66.95 -0.20 2.16 16 14 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 15 C 0.14 3.28 5.62 -4.04 -0.02 3.25 16 16 N -0.73 -19.49 5.37 -59.91 -0.32 -19.81 16 17 C -0.23 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 20 N -0.94 -28.94 13.06 55.49 0.72 -28.22 16 21 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.36 7.87 -51.93 -0.41 -0.05 16 29 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.08 0.63 4.78 -51.93 -0.25 0.39 16 31 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.68 7.27 -51.93 -0.38 0.30 16 34 H 0.07 0.54 7.09 -51.93 -0.37 0.17 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.34 7.82 -51.93 -0.41 0.93 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.04 0.90 6.64 -51.93 -0.34 0.56 16 40 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 41 H 0.38 10.48 7.51 -40.82 -0.31 10.18 16 42 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -35.79 337.10 -7.80 -43.59 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.03 Total: 4.23 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 0.01 Total: 3.43 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.10 Total: -57.68 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.75 Total: -16.87 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.79 -7.80 -43.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277813927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.857 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds