Wall clock time and date at job start Mon Mar 30 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42906 * 109.46868 * 2 1 4 4 C 1.42898 * 113.99643 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.46901 * 329.99659 * 4 3 2 6 6 C 1.53000 * 109.47295 * 89.99967 * 4 3 2 7 7 C 1.50702 * 109.46991 * 210.00183 * 4 3 2 8 8 O 1.21284 * 119.99868 * 359.97438 * 7 4 3 9 9 N 1.34774 * 119.99987 * 179.97438 * 7 4 3 10 10 C 1.47427 * 125.65068 * 4.69046 * 9 7 4 11 11 C 1.54907 * 104.83282 * 204.15012 * 10 9 7 12 12 C 1.55162 * 101.58347 * 322.99103 * 11 10 9 13 13 C 1.47024 * 125.64667 * 184.71796 * 9 7 4 14 14 H 1.08997 * 110.01300 * 59.42697 * 13 9 7 15 15 C 1.52999 * 109.88059 * 298.33395 * 13 9 7 16 16 N 1.46500 * 109.47371 * 178.08487 * 15 13 9 17 17 C 1.36932 * 120.00284 * 174.93099 * 16 15 13 18 18 H 1.07999 * 120.00291 * 359.97438 * 17 16 15 19 19 C 1.38817 * 120.00188 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00303 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46740 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47203 * 119.99887 * 21 19 17 24 24 H 1.48496 * 109.47071 * 240.00010 * 21 19 17 25 25 H 1.08997 * 109.46777 * 59.99813 * 1 2 3 26 26 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46484 * 299.99798 * 1 2 3 28 28 H 1.09003 * 109.46922 * 240.00459 * 2 1 3 29 29 H 1.08997 * 109.47288 * 120.00063 * 2 1 3 30 30 H 1.09001 * 109.46869 * 179.97438 * 6 4 3 31 31 H 1.08996 * 109.46836 * 299.99543 * 6 4 3 32 32 H 1.08998 * 109.46999 * 60.00313 * 6 4 3 33 33 H 1.09000 * 110.36312 * 85.30909 * 10 9 7 34 34 H 1.08996 * 110.45879 * 323.03458 * 10 9 7 35 35 H 1.08993 * 111.00390 * 204.91981 * 11 10 9 36 36 H 1.08998 * 111.00531 * 81.06640 * 11 10 9 37 37 H 1.09003 * 110.71810 * 277.14526 * 12 11 10 38 38 H 1.08993 * 110.87160 * 153.93699 * 12 11 10 39 39 H 1.09002 * 109.47033 * 58.09038 * 15 13 9 40 40 H 1.08995 * 109.47673 * 298.08895 * 15 13 9 41 41 H 0.97003 * 119.99657 * 355.21350 * 16 15 13 42 42 H 0.96997 * 120.00204 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6015 0.5130 6 6 3.9387 1.5006 -1.4433 7 6 3.8348 2.7263 0.7099 8 8 2.9862 3.4601 1.1709 9 7 5.1389 3.0433 0.8330 10 6 6.2641 2.2980 0.2397 11 6 7.4824 2.6422 1.1322 12 6 7.2131 4.1335 1.4655 13 6 5.6752 4.1893 1.5818 14 1 5.3799 4.1219 2.6288 15 6 5.1548 5.4951 0.9776 16 7 5.6574 6.6286 1.7577 17 6 5.4073 7.9096 1.3434 18 1 4.8399 8.0843 0.4413 19 6 5.8841 8.9837 2.0824 20 7 6.5770 8.7708 3.1811 21 14 5.5436 10.7311 1.5168 22 1 4.7502 10.6994 0.2619 23 1 4.7794 11.4512 2.5669 24 1 6.8298 11.4317 1.2723 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.0253 1.5871 -1.4436 31 1 3.6466 0.5848 -1.9570 32 1 3.5061 2.3592 -1.9568 33 1 6.4390 2.6272 -0.7846 34 1 6.0665 1.2264 0.2644 35 1 8.4156 2.5276 0.5808 36 1 7.4880 2.0346 2.0371 37 1 7.5624 4.7781 0.6588 38 1 7.6816 4.4112 2.4096 39 1 4.0649 5.4954 0.9971 40 1 5.4997 5.5816 -0.0527 41 1 6.1709 6.4717 2.5656 42 1 6.9105 9.5212 3.6972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277813927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:29 Heat of formation + Delta-G solvation = -91.943237 kcal Electronic energy + Delta-G solvation = -21521.602738 eV Core-core repulsion = 18308.174711 eV Total energy + Delta-G solvation = -3213.428027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49069 -39.38293 -38.18520 -36.48473 -34.09321 -33.17116 -32.31882 -31.04887 -30.02764 -26.87741 -26.01018 -24.39925 -23.68803 -23.08770 -21.95311 -20.35727 -19.13861 -18.37248 -17.75095 -17.27180 -16.81505 -16.53798 -16.31504 -15.51157 -15.35944 -15.06547 -15.00458 -14.49696 -14.35181 -14.04555 -13.74440 -13.67194 -13.34515 -13.17437 -13.01990 -12.91048 -12.85586 -12.76192 -12.30839 -12.16559 -12.04667 -11.93770 -11.91842 -11.80817 -11.55799 -11.04862 -10.91091 -10.44866 -9.71363 -9.06920 -8.00202 -5.30228 1.43137 1.45592 1.51271 1.55953 1.68685 2.52258 2.84396 3.31901 3.40433 3.63571 3.79567 3.87713 3.91255 4.01681 4.10675 4.20042 4.27745 4.32303 4.33928 4.46422 4.48594 4.63753 4.68635 4.77614 4.83647 4.88247 4.94150 5.01494 5.04849 5.11730 5.15931 5.21160 5.26513 5.34852 5.40610 5.45679 6.15502 6.21787 6.53381 7.13411 7.27988 7.98480 8.27173 9.23236 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.004287 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.486365 B = 6529.645959 C = 7364.712570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.084 3.916 5 H 0.120 0.880 6 C -0.172 4.172 7 C 0.511 3.489 8 O -0.578 6.578 9 N -0.608 5.608 10 C 0.089 3.911 11 C -0.119 4.119 12 C -0.117 4.117 13 C 0.137 3.863 14 H 0.050 0.950 15 C 0.152 3.848 16 N -0.736 5.736 17 C -0.252 4.252 18 H 0.066 0.934 19 C -0.069 4.069 20 N -0.965 5.965 21 Si 0.977 3.023 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.284 1.284 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.076 0.924 39 H -0.003 1.003 40 H 0.020 0.980 41 H 0.377 0.623 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.027 -25.170 -9.491 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.317 6.317 4 C 0.023 3.977 5 H 0.138 0.862 6 C -0.229 4.229 7 C 0.300 3.700 8 O -0.456 6.456 9 N -0.343 5.343 10 C -0.032 4.032 11 C -0.156 4.156 12 C -0.155 4.155 13 C 0.033 3.967 14 H 0.068 0.932 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.262 4.262 20 N -0.615 5.615 21 Si 0.805 3.195 22 H -0.196 1.196 23 H -0.218 1.218 24 H -0.210 1.210 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.015 0.985 40 H 0.038 0.962 41 H 0.209 0.791 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.780 -24.552 -9.392 26.298 hybrid contribution -0.248 1.431 0.481 1.530 sum -1.028 -23.120 -8.911 24.799 Atomic orbital electron populations 1.21783 0.93436 1.03509 1.02207 1.22853 0.96167 0.82070 1.01730 1.88050 1.19532 1.28968 1.95178 1.21907 0.83325 0.94553 0.97916 0.86212 1.22411 1.03502 1.03975 0.93033 1.21108 0.80923 0.88214 0.79708 1.90735 1.51109 1.53415 1.50340 1.48566 1.05655 1.27903 1.52152 1.22895 0.84549 0.97932 0.97822 1.22841 0.98586 0.93400 1.00796 1.22562 0.90857 0.98993 1.03089 1.21555 0.95639 0.85022 0.94499 0.93163 1.20941 0.95407 0.87188 0.93998 1.42321 1.65097 1.01194 1.29329 1.19581 1.27820 0.84514 1.06413 0.91629 1.25575 1.00990 1.01924 0.97719 1.69814 1.42516 1.31083 1.18114 0.85031 0.77333 0.79667 0.77441 1.19607 1.21808 1.21001 0.92472 0.88234 0.93564 0.90570 0.92156 0.88147 0.88484 0.93614 0.89481 0.86616 0.86715 0.89436 0.91195 0.90509 0.98462 0.96178 0.79075 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.05 0.80 6.47 71.98 0.47 1.26 16 3 O -0.40 -10.85 9.52 -129.94 -1.24 -12.09 16 4 C 0.08 1.88 2.49 29.85 0.07 1.95 16 5 H 0.12 1.75 7.59 -2.38 -0.02 1.73 16 6 C -0.17 -2.76 9.28 71.98 0.67 -2.09 16 7 C 0.51 17.27 7.13 87.66 0.62 17.89 16 8 O -0.58 -27.16 15.34 16.00 0.25 -26.91 16 9 N -0.61 -17.79 3.06 -788.05 -2.41 -20.20 16 10 C 0.09 1.47 5.10 86.85 0.44 1.91 16 11 C -0.12 -1.97 7.09 31.99 0.23 -1.74 16 12 C -0.12 -3.36 6.07 31.79 0.19 -3.17 16 13 C 0.14 5.05 2.98 45.34 0.14 5.18 16 14 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 15 C 0.15 7.31 5.62 86.38 0.49 7.79 16 16 N -0.74 -41.24 5.37 -343.46 -1.84 -43.08 16 17 C -0.25 -15.31 9.99 84.04 0.84 -14.47 16 18 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 21 Si 0.98 48.39 29.55 68.60 2.03 50.41 16 22 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 24 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.85 7.87 -2.39 -0.02 0.83 16 29 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.10 1.15 4.78 -2.39 -0.01 1.13 16 31 H 0.10 1.00 7.87 -2.39 -0.02 0.98 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.25 7.27 -2.39 -0.02 1.23 16 34 H 0.12 1.01 7.09 -2.39 -0.02 1.00 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 2.21 7.82 -2.39 -0.02 2.19 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.00 -0.14 6.64 -2.39 -0.02 -0.16 16 40 H 0.02 0.96 8.09 -2.39 -0.02 0.94 16 41 H 0.38 21.67 7.51 -92.71 -0.70 20.97 16 42 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -83.96 337.10 2.72 -81.24 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.30 Total: 22.11 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.36 Total: 9.07 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -3.98 Total: -123.83 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.99 Total: -39.00 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.41 kcal Total: -83.96 2.72 -81.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277813927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.706 kcal (2) G-P(sol) polarization free energy of solvation -83.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds