Wall clock time and date at job start Mon Mar 30 2020 01:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.46964 * 2 1 4 4 C 1.42907 * 113.99852 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.47158 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99330 * 359.97438 * 6 5 4 8 8 N 1.34765 * 120.00034 * 179.97438 * 6 5 4 9 9 C 1.47422 * 125.65170 * 4.90486 * 8 6 5 10 10 C 1.54912 * 104.83703 * 204.14775 * 9 8 6 11 11 C 1.55164 * 101.57952 * 322.99334 * 10 9 8 12 12 C 1.47032 * 125.64966 * 184.92836 * 8 6 5 13 13 H 1.08997 * 109.88117 * 59.49952 * 12 8 6 14 14 C 1.52998 * 109.87766 * 298.33762 * 12 8 6 15 15 N 1.46501 * 109.46996 * 176.82400 * 14 12 8 16 16 C 1.36934 * 120.00270 * 184.97995 * 15 14 12 17 17 H 1.08001 * 119.99937 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00274 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 120.00028 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46949 * 59.99586 * 20 18 16 22 22 H 1.48499 * 109.47010 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46987 * 300.00199 * 20 18 16 24 24 H 1.09002 * 109.47541 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47296 * 299.99969 * 1 2 3 26 26 H 1.09005 * 109.47135 * 59.99967 * 1 2 3 27 27 H 1.09004 * 109.46640 * 240.00341 * 2 1 3 28 28 H 1.08994 * 109.46764 * 120.00245 * 2 1 3 29 29 H 1.08993 * 109.47462 * 59.99874 * 4 3 2 30 30 H 1.08998 * 109.46738 * 299.99774 * 4 3 2 31 31 H 1.09005 * 109.47586 * 59.99722 * 5 4 3 32 32 H 1.09001 * 109.47394 * 299.99503 * 5 4 3 33 33 H 1.09002 * 110.37030 * 85.31089 * 9 8 6 34 34 H 1.09004 * 110.45911 * 323.03380 * 9 8 6 35 35 H 1.08988 * 111.01085 * 204.91575 * 10 9 8 36 36 H 1.09006 * 111.03486 * 81.07404 * 10 9 8 37 37 H 1.08996 * 110.71232 * 277.13562 * 11 10 9 38 38 H 1.09001 * 110.72135 * 153.86107 * 11 10 9 39 39 H 1.08996 * 109.47404 * 296.82126 * 14 12 8 40 40 H 1.09007 * 109.47523 * 56.82690 * 14 12 8 41 41 H 0.97001 * 120.00036 * 4.98056 * 15 14 12 42 42 H 0.96996 * 120.00485 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3278 3.0573 0.0001 7 8 6.0151 2.0581 0.0001 8 7 5.9073 4.2740 0.0002 9 6 5.1993 5.5630 0.1026 10 6 6.1554 6.5935 -0.5482 11 6 7.5406 6.0671 -0.0883 12 6 7.3505 4.5357 -0.1024 13 1 7.7368 4.1228 -1.0343 14 6 8.0787 3.9099 1.0888 15 7 9.5222 4.1103 0.9388 16 6 10.3888 3.5452 1.8359 17 1 10.0081 2.9515 2.6539 18 6 11.7564 3.7356 1.6941 19 7 12.2204 4.4587 0.6971 20 14 12.9386 2.9653 2.9184 21 1 12.7779 1.4890 2.9000 22 1 14.3331 3.3156 2.5475 23 1 12.6442 3.4782 4.2806 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8333 0.9767 -0.8907 30 1 3.8340 0.9764 0.8892 31 1 3.4230 3.4214 0.8906 32 1 3.4223 3.4224 -0.8894 33 1 5.0227 5.8169 1.1479 34 1 4.2560 5.5239 -0.4421 35 1 5.9707 7.5960 -0.1624 36 1 6.0711 6.5737 -1.6348 37 1 7.7718 6.4177 0.9175 38 1 8.3192 6.3655 -0.7903 39 1 7.7402 4.3826 2.0107 40 1 7.8622 2.8422 1.1270 41 1 9.8641 4.6433 0.2040 42 1 13.1760 4.5915 0.5978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277821699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:05 Heat of formation + Delta-G solvation = -76.773040 kcal Electronic energy + Delta-G solvation = -20889.289993 eV Core-core repulsion = 17676.519795 eV Total energy + Delta-G solvation = -3212.770198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11014 -38.28229 -37.29312 -34.48707 -32.75496 -31.64966 -31.27369 -30.18592 -28.61030 -25.12804 -24.31021 -23.01074 -22.59601 -21.97633 -20.44832 -18.78432 -17.53340 -16.89687 -16.68506 -16.33348 -15.95821 -15.13376 -14.72523 -14.45270 -14.28447 -13.72586 -13.68366 -13.27418 -13.15017 -12.71966 -12.69721 -12.59745 -12.21223 -12.12646 -11.94512 -11.52664 -11.28459 -11.27305 -11.07153 -10.88271 -10.79048 -10.53024 -10.38658 -10.03306 -9.77681 -9.75753 -9.56183 -8.79442 -8.43552 -6.85576 -5.70872 -2.98819 2.75824 2.88241 3.48913 3.52479 3.54162 3.62701 4.53822 4.61493 4.67527 4.78581 4.78707 4.88197 4.96974 5.01843 5.09234 5.17625 5.31918 5.40230 5.41880 5.52753 5.59579 5.61037 5.63716 5.65270 5.71970 5.82091 5.83520 5.94820 6.07417 6.10923 6.19977 6.44688 6.57109 6.87202 6.98940 7.04927 7.68055 7.76758 8.30694 8.48552 9.59164 10.15983 10.51771 11.52271 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.003717 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.787926 B = 7531.942160 C = 8643.740535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.395 6.395 4 C 0.077 3.923 5 C -0.133 4.133 6 C 0.528 3.472 7 O -0.530 6.530 8 N -0.612 5.612 9 C 0.099 3.901 10 C -0.135 4.135 11 C -0.122 4.122 12 C 0.130 3.870 13 H 0.076 0.924 14 C 0.145 3.855 15 N -0.729 5.729 16 C -0.234 4.234 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.936 5.936 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.014 0.986 40 H 0.040 0.960 41 H 0.383 0.617 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.888 0.419 -3.597 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.173 4.173 6 C 0.316 3.684 7 O -0.407 6.407 8 N -0.347 5.347 9 C -0.024 4.024 10 C -0.173 4.173 11 C -0.160 4.160 12 C 0.027 3.973 13 H 0.094 0.906 14 C 0.017 3.983 15 N -0.373 5.373 16 C -0.365 4.365 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.585 5.585 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.032 0.968 40 H 0.058 0.942 41 H 0.216 0.784 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.610 -0.144 -3.460 22.874 hybrid contribution 1.003 -0.388 0.439 1.161 sum -21.607 -0.532 -3.020 21.824 Atomic orbital electron populations 1.21747 0.93796 1.02201 1.03045 1.22442 0.95370 0.83669 1.00374 1.87783 1.21340 1.26705 1.95617 1.22127 0.80368 0.95505 1.01946 1.21434 0.92645 0.97927 1.05256 1.19985 0.89668 0.82098 0.76655 1.90767 1.65091 1.35501 1.49303 1.48517 1.08077 1.05296 1.72784 1.22344 0.95877 0.83313 1.00887 1.22798 0.95360 0.98300 1.00798 1.22683 0.96612 0.93371 1.03340 1.21845 0.79301 0.95693 1.00429 0.90596 1.20974 0.85475 0.98516 0.93326 1.42207 0.99110 1.62361 1.33650 1.19181 0.87561 1.24696 1.05067 0.91325 1.24716 0.96746 1.00934 0.98683 1.69643 1.12782 1.44073 1.32023 0.86248 0.80297 0.78956 0.80597 1.21278 1.21693 1.21321 0.91138 0.91879 0.91905 0.93303 0.93252 0.92344 0.92250 0.88304 0.88327 0.91228 0.90747 0.89962 0.90798 0.89878 0.89759 0.96845 0.94169 0.78357 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.52 6.66 37.16 0.25 0.77 16 3 O -0.39 -4.49 10.34 -35.23 -0.36 -4.85 16 4 C 0.08 0.92 5.23 37.16 0.19 1.12 16 5 C -0.13 -1.49 5.00 -27.88 -0.14 -1.63 16 6 C 0.53 8.19 7.67 -10.99 -0.08 8.11 16 7 O -0.53 -10.59 14.80 5.55 0.08 -10.51 16 8 N -0.61 -9.01 3.06 -163.01 -0.50 -9.50 16 9 C 0.10 1.03 6.73 -2.53 -0.02 1.01 16 10 C -0.13 -1.39 7.09 -24.58 -0.17 -1.56 16 11 C -0.12 -1.78 6.00 -24.90 -0.15 -1.93 16 12 C 0.13 2.30 3.00 -66.95 -0.20 2.10 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 14 C 0.15 3.25 5.63 -4.04 -0.02 3.22 16 15 N -0.73 -19.38 5.44 -59.91 -0.33 -19.71 16 16 C -0.23 -6.88 9.99 -15.06 -0.15 -7.03 16 17 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 19 N -0.94 -28.90 13.06 55.49 0.72 -28.17 16 20 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.73 8.10 -51.93 -0.42 0.30 16 30 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.93 7.95 -51.93 -0.41 0.52 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 35 H 0.08 0.69 8.14 -51.94 -0.42 0.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.31 7.80 -51.93 -0.40 0.91 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.01 0.31 8.07 -51.93 -0.42 -0.11 16 40 H 0.04 1.01 6.60 -51.93 -0.34 0.66 16 41 H 0.38 10.41 7.39 -40.82 -0.30 10.11 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -34.34 343.54 -7.75 -42.09 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.31 Total: 4.38 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.21 Total: 2.95 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.10 Total: -57.38 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.28 Total: -15.36 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.34 -7.75 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277821699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.685 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds