Wall clock time and date at job start Mon Mar 30 2020 01:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.46964 * 2 1 4 4 C 1.42907 * 113.99852 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.47158 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99330 * 359.97438 * 6 5 4 8 8 N 1.34765 * 120.00034 * 179.97438 * 6 5 4 9 9 C 1.47422 * 125.65170 * 4.90486 * 8 6 5 10 10 C 1.54912 * 104.83703 * 204.14775 * 9 8 6 11 11 C 1.55164 * 101.57952 * 322.99334 * 10 9 8 12 12 C 1.47032 * 125.64966 * 184.92836 * 8 6 5 13 13 H 1.08997 * 109.88117 * 59.49952 * 12 8 6 14 14 C 1.52998 * 109.87766 * 298.33762 * 12 8 6 15 15 N 1.46501 * 109.46996 * 176.82400 * 14 12 8 16 16 C 1.36934 * 120.00270 * 184.97995 * 15 14 12 17 17 H 1.08001 * 119.99937 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00274 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 120.00028 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46949 * 59.99586 * 20 18 16 22 22 H 1.48499 * 109.47010 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46987 * 300.00199 * 20 18 16 24 24 H 1.09002 * 109.47541 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47296 * 299.99969 * 1 2 3 26 26 H 1.09005 * 109.47135 * 59.99967 * 1 2 3 27 27 H 1.09004 * 109.46640 * 240.00341 * 2 1 3 28 28 H 1.08994 * 109.46764 * 120.00245 * 2 1 3 29 29 H 1.08993 * 109.47462 * 59.99874 * 4 3 2 30 30 H 1.08998 * 109.46738 * 299.99774 * 4 3 2 31 31 H 1.09005 * 109.47586 * 59.99722 * 5 4 3 32 32 H 1.09001 * 109.47394 * 299.99503 * 5 4 3 33 33 H 1.09002 * 110.37030 * 85.31089 * 9 8 6 34 34 H 1.09004 * 110.45911 * 323.03380 * 9 8 6 35 35 H 1.08988 * 111.01085 * 204.91575 * 10 9 8 36 36 H 1.09006 * 111.03486 * 81.07404 * 10 9 8 37 37 H 1.08996 * 110.71232 * 277.13562 * 11 10 9 38 38 H 1.09001 * 110.72135 * 153.86107 * 11 10 9 39 39 H 1.08996 * 109.47404 * 296.82126 * 14 12 8 40 40 H 1.09007 * 109.47523 * 56.82690 * 14 12 8 41 41 H 0.97001 * 120.00036 * 4.98056 * 15 14 12 42 42 H 0.96996 * 120.00485 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3278 3.0573 0.0001 7 8 6.0151 2.0581 0.0001 8 7 5.9073 4.2740 0.0002 9 6 5.1993 5.5630 0.1026 10 6 6.1554 6.5935 -0.5482 11 6 7.5406 6.0671 -0.0883 12 6 7.3505 4.5357 -0.1024 13 1 7.7368 4.1228 -1.0343 14 6 8.0787 3.9099 1.0888 15 7 9.5222 4.1103 0.9388 16 6 10.3888 3.5452 1.8359 17 1 10.0081 2.9515 2.6539 18 6 11.7564 3.7356 1.6941 19 7 12.2204 4.4587 0.6971 20 14 12.9386 2.9653 2.9184 21 1 12.7779 1.4890 2.9000 22 1 14.3331 3.3156 2.5475 23 1 12.6442 3.4782 4.2806 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8333 0.9767 -0.8907 30 1 3.8340 0.9764 0.8892 31 1 3.4230 3.4214 0.8906 32 1 3.4223 3.4224 -0.8894 33 1 5.0227 5.8169 1.1479 34 1 4.2560 5.5239 -0.4421 35 1 5.9707 7.5960 -0.1624 36 1 6.0711 6.5737 -1.6348 37 1 7.7718 6.4177 0.9175 38 1 8.3192 6.3655 -0.7903 39 1 7.7402 4.3826 2.0107 40 1 7.8622 2.8422 1.1270 41 1 9.8641 4.6433 0.2040 42 1 13.1760 4.5915 0.5978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277821699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:05 Heat of formation + Delta-G solvation = -100.887529 kcal Electronic energy + Delta-G solvation = -20890.335675 eV Core-core repulsion = 17676.519795 eV Total energy + Delta-G solvation = -3213.815881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32723 -39.22652 -38.48330 -36.44375 -33.89944 -33.23089 -32.51905 -31.11442 -30.14772 -26.75233 -25.61367 -24.27997 -23.68289 -23.16968 -21.69190 -20.12087 -19.14540 -18.38085 -17.74947 -17.35227 -17.03332 -16.47576 -16.19808 -15.79249 -15.41827 -15.13754 -15.04738 -14.87396 -14.57345 -14.05554 -13.74088 -13.64484 -13.22700 -13.15112 -12.94242 -12.90936 -12.74374 -12.72083 -12.25406 -12.10081 -12.05181 -11.96143 -11.91261 -11.76576 -11.58215 -11.06988 -10.85401 -10.62428 -9.69681 -9.06953 -7.99993 -5.29952 1.42980 1.47349 1.53364 1.56421 1.78667 2.52377 2.74527 3.32230 3.50666 3.65638 3.79803 3.91895 4.00664 4.06645 4.13393 4.16848 4.30398 4.34508 4.37367 4.45713 4.49848 4.52790 4.68851 4.77360 4.78461 4.85410 4.91440 4.96635 5.03853 5.04496 5.14269 5.15584 5.28148 5.35294 5.40376 5.45858 6.15494 6.21701 6.53800 7.11208 7.28193 7.99542 8.27650 9.23069 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.003717 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.787926 B = 7531.942160 C = 8643.740535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.400 6.400 4 C 0.080 3.920 5 C -0.117 4.117 6 C 0.520 3.480 7 O -0.587 6.587 8 N -0.611 5.611 9 C 0.093 3.907 10 C -0.119 4.119 11 C -0.120 4.120 12 C 0.136 3.864 13 H 0.051 0.949 14 C 0.152 3.848 15 N -0.737 5.737 16 C -0.253 4.253 17 H 0.066 0.934 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.977 3.023 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.008 0.992 41 H 0.377 0.623 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.021 1.545 -3.383 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.320 6.320 4 C 0.003 3.997 5 C -0.157 4.157 6 C 0.310 3.690 7 O -0.468 6.468 8 N -0.345 5.345 9 C -0.028 4.028 10 C -0.157 4.157 11 C -0.158 4.158 12 C 0.032 3.968 13 H 0.070 0.930 14 C 0.025 3.975 15 N -0.380 5.380 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.805 3.195 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.026 0.974 41 H 0.210 0.790 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.804 1.013 -3.237 25.035 hybrid contribution 1.631 -0.781 0.372 1.847 sum -23.173 0.232 -2.865 23.351 Atomic orbital electron populations 1.21751 0.92055 1.03468 1.03043 1.22690 0.96797 0.82767 1.00657 1.87764 1.20499 1.28108 1.95606 1.22002 0.80896 0.96050 1.00738 1.21374 0.88908 0.97756 1.07620 1.20850 0.91393 0.81454 0.75297 1.90743 1.66683 1.37507 1.51840 1.48642 1.06921 1.06943 1.71956 1.22716 0.96899 0.80704 1.02463 1.22817 0.91646 0.99538 1.01667 1.22593 0.99578 0.90961 1.02671 1.21561 0.81035 0.97448 0.96796 0.93039 1.20953 0.83932 0.96963 0.95673 1.42326 1.00679 1.62039 1.33003 1.19515 0.88573 1.24868 1.05549 0.91629 1.25576 0.98289 1.01652 1.00728 1.69792 1.12982 1.45184 1.33608 0.85179 0.77773 0.78004 0.78587 1.20848 1.21341 1.20063 0.89293 0.91927 0.91794 0.92952 0.93151 0.93455 0.93836 0.85978 0.85463 0.89961 0.86858 0.86990 0.89566 0.91179 0.90490 0.96805 0.97370 0.79038 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.40 -8.51 10.34 -148.98 -1.54 -10.05 16 4 C 0.08 1.88 5.23 71.98 0.38 2.25 16 5 C -0.12 -2.37 5.00 29.85 0.15 -2.22 16 6 C 0.52 15.96 7.67 87.66 0.67 16.63 16 7 O -0.59 -24.53 14.80 -3.04 -0.04 -24.58 16 8 N -0.61 -17.35 3.06 -788.05 -2.41 -19.77 16 9 C 0.09 1.60 6.73 86.86 0.58 2.19 16 10 C -0.12 -2.05 7.09 31.99 0.23 -1.83 16 11 C -0.12 -3.43 6.00 31.78 0.19 -3.24 16 12 C 0.14 4.90 3.00 45.34 0.14 5.03 16 13 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 14 C 0.15 7.11 5.63 86.38 0.49 7.60 16 15 N -0.74 -40.75 5.44 -343.45 -1.87 -42.61 16 16 C -0.25 -15.30 9.99 84.03 0.84 -14.46 16 17 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 19 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 20 Si 0.98 48.06 29.55 68.60 2.03 50.09 16 21 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 23 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 24 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.13 1.90 7.95 -2.39 -0.02 1.88 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.16 7.48 -2.38 -0.02 1.14 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 2.19 7.80 -2.39 -0.02 2.17 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.01 0.65 8.07 -2.39 -0.02 0.63 16 40 H 0.01 0.44 6.60 -2.38 -0.02 0.42 16 41 H 0.38 21.38 7.39 -92.71 -0.68 20.69 16 42 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -77.44 343.54 2.09 -75.35 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.30 Total: 23.41 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.35 Total: 8.45 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -4.00 Total: -122.68 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.59 Total: -34.62 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -77.44 2.09 -75.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277821699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.533 kcal (2) G-P(sol) polarization free energy of solvation -77.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds