Wall clock time and date at job start Mon Mar 30 2020 01:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99809 * 2 1 4 4 C 1.52994 * 109.46907 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47305 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47565 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00029 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00550 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99795 * 0.02562 * 8 6 5 10 10 C 1.46497 * 120.00541 * 179.97438 * 8 6 5 11 11 C 1.53784 * 113.61569 * 240.00166 * 10 8 6 12 12 C 1.53787 * 87.07923 * 220.01663 * 11 10 8 13 13 N 1.46501 * 113.61128 * 139.98386 * 12 11 10 14 14 C 1.36937 * 119.99940 * 155.00138 * 13 12 11 15 15 H 1.07995 * 119.99838 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99758 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99932 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99944 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47103 * 89.99533 * 18 16 14 20 20 H 1.48494 * 109.46910 * 209.99950 * 18 16 14 21 21 H 1.48504 * 109.46769 * 329.99638 * 18 16 14 22 22 C 1.53779 * 113.61581 * 142.50385 * 10 8 6 23 23 H 1.09012 * 109.47266 * 300.00166 * 1 2 3 24 24 H 1.08992 * 109.47479 * 59.99948 * 1 2 3 25 25 H 1.08991 * 109.47163 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47657 * 59.99994 * 3 2 1 27 27 H 1.09005 * 109.46670 * 300.00189 * 3 2 1 28 28 H 1.09005 * 109.47448 * 59.99808 * 4 3 2 29 29 H 1.08999 * 109.47271 * 299.99930 * 4 3 2 30 30 H 1.08999 * 109.47305 * 59.99719 * 5 4 3 31 31 H 1.08999 * 109.47052 * 300.00252 * 5 4 3 32 32 H 1.09004 * 109.46666 * 269.99777 * 9 8 6 33 33 H 1.08999 * 109.47266 * 29.99467 * 9 8 6 34 34 H 1.08995 * 109.47412 * 150.00054 * 9 8 6 35 35 H 1.09002 * 112.90477 * 11.25212 * 10 8 6 36 36 H 1.09004 * 113.61451 * 105.47149 * 11 10 8 37 37 H 1.08994 * 113.61477 * 334.56451 * 11 10 8 38 38 H 1.09000 * 113.61529 * 270.88430 * 12 11 10 39 39 H 0.97005 * 120.00129 * 334.99728 * 13 12 11 40 40 H 0.97007 * 119.99563 * 179.97438 * 17 16 14 41 41 H 1.09006 * 113.61307 * 25.43652 * 22 10 8 42 42 H 1.09007 * 113.61642 * 254.53409 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 5.6599 2.4635 -0.0013 7 8 6.1816 1.3685 -0.0004 8 7 6.4239 3.5738 -0.0023 9 6 5.7939 4.8964 -0.0029 10 6 7.8843 3.4582 -0.0018 11 6 8.5537 4.1132 1.2180 12 6 9.6432 4.6115 0.2537 13 7 10.0911 5.9786 0.5305 14 6 11.3413 6.3811 0.1429 15 1 11.9972 5.6906 -0.3663 16 6 11.7655 7.6767 0.4047 17 7 10.9659 8.5183 1.0249 18 14 13.4707 8.2260 -0.1246 19 1 13.4054 8.7897 -1.4969 20 1 13.9699 9.2632 0.8135 21 1 14.3922 7.0616 -0.1111 22 6 8.5869 4.5230 -0.8604 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6886 1.8465 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8567 0.6439 -0.8909 29 1 3.8574 0.6437 0.8891 30 1 3.8365 3.1236 0.8887 31 1 3.8357 3.1231 -0.8912 32 1 5.6373 5.2237 -1.0308 33 1 4.8344 4.8420 0.5113 34 1 6.4413 5.6075 0.5102 35 1 8.2296 2.4427 -0.1964 36 1 8.9170 3.3962 1.9542 37 1 7.9635 4.9149 1.6618 38 1 10.4692 3.9114 0.1289 39 1 9.5021 6.5987 0.9882 40 1 11.2626 9.4235 1.2081 41 1 8.0058 5.4367 -0.9848 42 1 8.9770 4.1368 -1.8022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279200036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:51 Heat of formation + Delta-G solvation = -54.638962 kcal Electronic energy + Delta-G solvation = -20491.165812 eV Core-core repulsion = 17279.355419 eV Total energy + Delta-G solvation = -3211.810392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18428 -38.40571 -37.90272 -34.77594 -33.85676 -32.99718 -30.03159 -28.21341 -26.97150 -26.12995 -25.12652 -24.34735 -22.77729 -21.46698 -19.31245 -18.75797 -17.14973 -17.10728 -16.70410 -16.65839 -15.98882 -15.65931 -15.10312 -14.54965 -14.49787 -14.16922 -13.69039 -13.13151 -13.00468 -12.82368 -12.51170 -12.36195 -12.12714 -11.99726 -11.95093 -11.77535 -11.28867 -11.25177 -11.13621 -10.90594 -10.58973 -10.46699 -10.26051 -10.01446 -9.99487 -9.73928 -9.51767 -8.91423 -8.42584 -7.00744 -5.82198 -3.10940 2.67000 2.99843 3.41144 3.46717 3.48136 3.51634 4.45087 4.56618 4.67736 4.80778 4.92690 4.96891 5.02996 5.09530 5.10163 5.14550 5.19984 5.23350 5.30348 5.37809 5.41529 5.43826 5.55400 5.74762 5.84972 5.88344 5.95828 6.04502 6.15701 6.27884 6.33453 6.45408 6.55766 6.80468 6.83582 7.03059 7.53954 7.67201 8.24551 8.36360 9.47752 10.04363 10.39088 11.40170 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.064125 B = 0.002698 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.540863 B =10375.005493 C =10599.081282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.137 4.137 6 C 0.511 3.489 7 O -0.545 6.545 8 N -0.600 5.600 9 C 0.074 3.926 10 C 0.116 3.884 11 C -0.163 4.163 12 C 0.169 3.831 13 N -0.710 5.710 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.174 4.174 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.082 0.918 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.966 -10.771 -1.922 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.142 4.142 5 C -0.177 4.177 6 C 0.299 3.701 7 O -0.423 6.423 8 N -0.332 5.332 9 C -0.069 4.069 10 C 0.012 3.988 11 C -0.203 4.203 12 C 0.056 3.944 13 N -0.348 5.348 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.216 4.216 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.365 -11.450 -1.965 22.582 hybrid contribution 0.377 1.070 -0.156 1.145 sum -18.988 -10.380 -2.120 21.744 Atomic orbital electron populations 1.22741 0.81062 1.02779 0.99935 1.87897 1.19650 1.28087 1.95407 1.22566 0.94198 0.84643 1.00139 1.21227 0.91953 0.96048 1.04994 1.21579 0.92653 0.99077 1.04362 1.20554 0.89305 0.84111 0.76116 1.90689 1.75066 1.26411 1.50117 1.47894 1.06896 1.06020 1.72340 1.21802 0.98324 0.84741 1.02023 1.22598 0.77233 1.00422 0.98524 1.23922 0.99018 1.00073 0.97276 1.21347 0.92401 0.88630 0.91981 1.42353 1.16125 1.07525 1.68755 1.19317 0.91604 0.95640 1.30906 0.90988 1.24768 0.98456 0.96537 1.01169 1.69658 1.36030 1.05833 1.46590 0.86172 0.83960 0.78166 0.77787 1.21691 1.21769 1.20688 1.24317 0.99939 0.97756 0.99615 0.94085 0.94089 0.89632 0.93238 0.93254 0.90305 0.90280 0.88792 0.88831 0.92443 0.91329 0.90020 0.86893 0.91786 0.90123 0.90266 0.78132 0.93463 0.89902 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.99 10.70 -35.23 -0.38 -4.37 16 3 C 0.06 0.51 5.94 37.15 0.22 0.73 16 4 C -0.10 -1.05 4.87 -26.74 -0.13 -1.18 16 5 C -0.14 -1.25 4.25 -27.89 -0.12 -1.37 16 6 C 0.51 6.97 7.67 -10.99 -0.08 6.89 16 7 O -0.55 -9.51 15.47 5.55 0.09 -9.43 16 8 N -0.60 -8.05 3.08 -173.00 -0.53 -8.58 16 9 C 0.07 0.78 8.85 59.85 0.53 1.31 16 10 C 0.12 1.80 4.20 -67.12 -0.28 1.51 16 11 C -0.16 -2.71 7.37 -25.91 -0.19 -2.90 16 12 C 0.17 3.30 4.48 -67.12 -0.30 3.00 16 13 N -0.71 -17.34 5.40 -52.64 -0.28 -17.63 16 14 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 18 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.17 -2.95 7.30 -25.92 -0.19 -3.14 16 23 H 0.04 0.23 8.14 -51.92 -0.42 -0.20 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 29 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.09 0.68 7.40 -51.93 -0.38 0.30 16 31 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 34 H 0.08 0.97 6.33 -51.93 -0.33 0.64 16 35 H 0.11 1.87 7.24 -51.93 -0.38 1.49 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.34 6.89 -51.93 -0.36 0.98 16 38 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 39 H 0.38 9.88 7.92 -40.82 -0.32 9.56 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.08 1.43 6.72 -51.93 -0.35 1.08 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -32.50 342.64 -6.99 -39.49 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.06 Total: 6.27 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 0.32 Total: -1.12 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.09 Total: -53.11 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.29 Total: -13.80 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.50 -6.99 -39.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279200036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.149 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds