Wall clock time and date at job start Mon Mar 30 2020 01:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99809 * 2 1 4 4 C 1.52994 * 109.46907 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47305 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47565 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00029 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00550 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99795 * 0.02562 * 8 6 5 10 10 C 1.46497 * 120.00541 * 179.97438 * 8 6 5 11 11 C 1.53784 * 113.61569 * 240.00166 * 10 8 6 12 12 C 1.53787 * 87.07923 * 220.01663 * 11 10 8 13 13 N 1.46501 * 113.61128 * 139.98386 * 12 11 10 14 14 C 1.36937 * 119.99940 * 155.00138 * 13 12 11 15 15 H 1.07995 * 119.99838 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99758 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99932 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99944 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47103 * 89.99533 * 18 16 14 20 20 H 1.48494 * 109.46910 * 209.99950 * 18 16 14 21 21 H 1.48504 * 109.46769 * 329.99638 * 18 16 14 22 22 C 1.53779 * 113.61581 * 142.50385 * 10 8 6 23 23 H 1.09012 * 109.47266 * 300.00166 * 1 2 3 24 24 H 1.08992 * 109.47479 * 59.99948 * 1 2 3 25 25 H 1.08991 * 109.47163 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47657 * 59.99994 * 3 2 1 27 27 H 1.09005 * 109.46670 * 300.00189 * 3 2 1 28 28 H 1.09005 * 109.47448 * 59.99808 * 4 3 2 29 29 H 1.08999 * 109.47271 * 299.99930 * 4 3 2 30 30 H 1.08999 * 109.47305 * 59.99719 * 5 4 3 31 31 H 1.08999 * 109.47052 * 300.00252 * 5 4 3 32 32 H 1.09004 * 109.46666 * 269.99777 * 9 8 6 33 33 H 1.08999 * 109.47266 * 29.99467 * 9 8 6 34 34 H 1.08995 * 109.47412 * 150.00054 * 9 8 6 35 35 H 1.09002 * 112.90477 * 11.25212 * 10 8 6 36 36 H 1.09004 * 113.61451 * 105.47149 * 11 10 8 37 37 H 1.08994 * 113.61477 * 334.56451 * 11 10 8 38 38 H 1.09000 * 113.61529 * 270.88430 * 12 11 10 39 39 H 0.97005 * 120.00129 * 334.99728 * 13 12 11 40 40 H 0.97007 * 119.99563 * 179.97438 * 17 16 14 41 41 H 1.09006 * 113.61307 * 25.43652 * 22 10 8 42 42 H 1.09007 * 113.61642 * 254.53409 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 5.6599 2.4635 -0.0013 7 8 6.1816 1.3685 -0.0004 8 7 6.4239 3.5738 -0.0023 9 6 5.7939 4.8964 -0.0029 10 6 7.8843 3.4582 -0.0018 11 6 8.5537 4.1132 1.2180 12 6 9.6432 4.6115 0.2537 13 7 10.0911 5.9786 0.5305 14 6 11.3413 6.3811 0.1429 15 1 11.9972 5.6906 -0.3663 16 6 11.7655 7.6767 0.4047 17 7 10.9659 8.5183 1.0249 18 14 13.4707 8.2260 -0.1246 19 1 13.4054 8.7897 -1.4969 20 1 13.9699 9.2632 0.8135 21 1 14.3922 7.0616 -0.1111 22 6 8.5869 4.5230 -0.8604 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6886 1.8465 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8567 0.6439 -0.8909 29 1 3.8574 0.6437 0.8891 30 1 3.8365 3.1236 0.8887 31 1 3.8357 3.1231 -0.8912 32 1 5.6373 5.2237 -1.0308 33 1 4.8344 4.8420 0.5113 34 1 6.4413 5.6075 0.5102 35 1 8.2296 2.4427 -0.1964 36 1 8.9170 3.3962 1.9542 37 1 7.9635 4.9149 1.6618 38 1 10.4692 3.9114 0.1289 39 1 9.5021 6.5987 0.9882 40 1 11.2626 9.4235 1.2081 41 1 8.0058 5.4367 -0.9848 42 1 8.9770 4.1368 -1.8022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279200036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:51 Heat of formation + Delta-G solvation = -76.822084 kcal Electronic energy + Delta-G solvation = -20492.127744 eV Core-core repulsion = 17279.355419 eV Total energy + Delta-G solvation = -3212.772325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34549 -39.52574 -38.77114 -36.17845 -35.01075 -34.38984 -31.92814 -28.93399 -27.95336 -26.91023 -26.52494 -26.03221 -24.05447 -22.49354 -20.65276 -19.97874 -19.04060 -18.21679 -17.62138 -17.36575 -17.01305 -16.51907 -16.32159 -16.11259 -15.67374 -15.11360 -15.07836 -14.81500 -14.16449 -13.98740 -13.53717 -13.29391 -13.25101 -13.13361 -12.99630 -12.83701 -12.73320 -12.60165 -12.24466 -12.14137 -11.96933 -11.94322 -11.86465 -11.67251 -11.41834 -10.88469 -10.75457 -10.58404 -9.57023 -8.99116 -7.95090 -5.23119 1.48639 1.49341 1.57903 1.63055 2.00707 2.56975 2.88057 3.36551 3.56539 3.76811 3.81648 3.94720 3.99870 4.15519 4.18725 4.28168 4.29765 4.37611 4.48437 4.53902 4.56252 4.59358 4.67174 4.74370 4.75841 4.85011 4.88164 4.88558 5.00668 5.09556 5.13392 5.14273 5.26619 5.43971 5.52628 5.67544 6.27106 6.28026 6.48730 7.19209 7.33924 8.08605 8.33079 9.27845 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.064125 B = 0.002698 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.540863 B =10375.005493 C =10599.081282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.063 3.937 4 C -0.101 4.101 5 C -0.125 4.125 6 C 0.504 3.496 7 O -0.591 6.591 8 N -0.601 5.601 9 C 0.069 3.931 10 C 0.129 3.871 11 C -0.150 4.150 12 C 0.152 3.848 13 N -0.722 5.722 14 C -0.245 4.245 15 H 0.075 0.925 16 C -0.074 4.074 17 N -0.967 5.967 18 Si 0.971 3.029 19 H -0.287 1.287 20 H -0.296 1.296 21 H -0.271 1.271 22 C -0.159 4.159 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.644 -10.596 -2.371 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.013 4.013 4 C -0.140 4.140 5 C -0.164 4.164 6 C 0.295 3.705 7 O -0.472 6.472 8 N -0.332 5.332 9 C -0.073 4.073 10 C 0.025 3.975 11 C -0.190 4.190 12 C 0.041 3.959 13 N -0.360 5.360 14 C -0.376 4.376 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.617 5.617 18 Si 0.801 3.199 19 H -0.214 1.214 20 H -0.223 1.223 21 H -0.196 1.196 22 C -0.201 4.201 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.074 -11.306 -2.433 24.038 hybrid contribution 0.848 0.921 -0.022 1.252 sum -20.226 -10.385 -2.455 22.869 Atomic orbital electron populations 1.22918 0.79361 1.03682 1.01067 1.87850 1.21643 1.29355 1.95678 1.22594 0.92508 0.84363 1.01865 1.21157 0.93710 0.96263 1.02824 1.21594 0.88738 0.99029 1.07067 1.21386 0.91172 0.83195 0.74776 1.90673 1.76233 1.28173 1.52155 1.47955 1.05820 1.07418 1.71979 1.22037 0.99398 0.82674 1.03213 1.22209 0.79174 0.99189 0.96953 1.23764 0.97883 1.00023 0.97286 1.21628 0.93416 0.86405 0.94440 1.42474 1.15307 1.09158 1.69011 1.19681 0.92626 0.95679 1.29664 0.90681 1.25534 1.02033 0.96900 1.02202 1.69798 1.37668 1.05877 1.48399 0.85171 0.80043 0.77651 0.77076 1.21429 1.22254 1.19647 1.24074 0.98875 0.98269 0.98881 0.92924 0.92901 0.89027 0.91427 0.91420 0.92536 0.92554 0.85853 0.85920 0.91212 0.87686 0.91486 0.87932 0.91579 0.89825 0.90699 0.79175 0.93997 0.89878 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.43 -8.10 10.70 -148.98 -1.59 -9.69 16 3 C 0.06 0.89 5.94 71.98 0.43 1.32 16 4 C -0.10 -1.91 4.87 30.59 0.15 -1.76 16 5 C -0.12 -1.90 4.25 29.85 0.13 -1.77 16 6 C 0.50 12.94 7.67 87.66 0.67 13.62 16 7 O -0.59 -20.63 15.47 -3.05 -0.05 -20.67 16 8 N -0.60 -14.98 3.08 -819.64 -2.53 -17.51 16 9 C 0.07 1.24 8.85 127.77 1.13 2.37 16 10 C 0.13 3.92 4.20 45.52 0.19 4.11 16 11 C -0.15 -4.90 7.37 31.12 0.23 -4.67 16 12 C 0.15 5.89 4.48 45.52 0.20 6.10 16 13 N -0.72 -35.47 5.40 -320.44 -1.73 -37.20 16 14 C -0.24 -13.39 9.97 84.03 0.84 -12.55 16 15 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 16 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 17 N -0.97 -57.89 13.06 21.65 0.28 -57.61 16 18 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.16 -5.29 7.30 31.12 0.23 -5.06 16 23 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 24 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 29 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 30 H 0.12 1.22 7.40 -2.39 -0.02 1.20 16 31 H 0.12 1.23 8.11 -2.39 -0.02 1.21 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.10 1.14 6.44 -2.39 -0.02 1.12 16 34 H 0.07 1.45 6.33 -2.39 -0.02 1.43 16 35 H 0.10 3.38 7.24 -2.39 -0.02 3.36 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.71 6.89 -2.39 -0.02 2.69 16 38 H 0.07 2.95 8.10 -2.39 -0.02 2.93 16 39 H 0.38 19.55 7.92 -92.70 -0.73 18.81 16 40 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 41 H 0.08 2.78 6.72 -2.38 -0.02 2.76 16 42 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -71.24 342.64 2.58 -68.66 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.26 Total: 26.85 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.91 Total: -0.51 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -3.98 Total: -112.31 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.64 Total: -30.37 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -71.24 2.58 -68.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279200036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.162 kcal (2) G-P(sol) polarization free energy of solvation -71.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds