Wall clock time and date at job start Mon Mar 30 2020 01:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.47100 * 2 1 4 4 C 1.42908 * 113.99895 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.46924 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99964 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99772 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99912 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46000 * 34.97172 * 8 7 5 10 10 C 1.53037 * 109.46020 * 274.99853 * 8 7 5 11 11 C 1.53197 * 109.31244 * 178.61467 * 10 8 7 12 12 N 1.46927 * 108.77684 * 54.63683 * 11 10 8 13 13 C 1.36932 * 120.63086 * 126.41064 * 12 11 10 14 14 H 1.07991 * 120.00462 * 207.67892 * 13 12 11 15 15 C 1.38814 * 119.99846 * 27.67986 * 13 12 11 16 16 N 1.31618 * 120.00224 * 17.35288 * 15 13 12 17 17 Si 1.86806 * 119.99918 * 197.35418 * 15 13 12 18 18 H 1.48499 * 109.47326 * 90.00102 * 17 15 13 19 19 H 1.48501 * 109.46893 * 210.00087 * 17 15 13 20 20 H 1.48499 * 109.47084 * 329.99865 * 17 15 13 21 21 C 1.46919 * 118.73607 * 306.39374 * 12 11 10 22 22 H 1.09005 * 109.58502 * 173.39474 * 21 12 11 23 23 C 1.53001 * 109.58568 * 293.67441 * 21 12 11 24 24 C 1.53040 * 109.45861 * 154.93104 * 8 7 5 25 25 H 1.09005 * 109.46970 * 59.99797 * 1 2 3 26 26 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47256 * 300.00246 * 1 2 3 28 28 H 1.08998 * 109.47385 * 240.00233 * 2 1 3 29 29 H 1.09003 * 109.47602 * 119.99806 * 2 1 3 30 30 H 1.09004 * 109.46568 * 299.99857 * 4 3 2 31 31 H 1.08994 * 109.47043 * 59.99601 * 4 3 2 32 32 H 0.97000 * 120.00357 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.50276 * 298.56502 * 10 8 7 34 34 H 1.09002 * 109.49590 * 58.66405 * 10 8 7 35 35 H 1.08998 * 109.58256 * 174.42815 * 11 10 8 36 36 H 1.09002 * 109.58283 * 294.84617 * 11 10 8 37 37 H 0.97000 * 120.00217 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47284 * 60.00856 * 23 21 12 39 39 H 1.09002 * 109.47352 * 180.02562 * 23 21 12 40 40 H 1.08991 * 109.47180 * 300.00317 * 23 21 12 41 41 H 1.08998 * 109.50202 * 301.33844 * 24 8 7 42 42 H 1.09006 * 109.50017 * 61.43669 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8195 2.9162 -0.0012 6 8 2.9610 3.7729 -0.0016 7 7 5.1209 3.2663 -0.0013 8 6 5.4987 4.6818 -0.0024 9 1 4.7785 5.2503 0.5861 10 6 5.5089 5.2056 -1.4403 11 6 5.8705 6.6942 -1.4346 12 7 7.1420 6.8694 -0.7196 13 6 8.1876 7.5301 -1.3072 14 1 9.2028 7.2938 -1.0250 15 6 7.9425 8.5040 -2.2656 16 7 6.7436 9.0367 -2.3709 17 14 9.3144 9.0583 -3.4060 18 1 9.3168 8.2113 -4.6257 19 1 9.0971 10.4766 -3.7886 20 1 10.6197 8.9277 -2.7100 21 6 7.2702 6.3223 0.6379 22 1 8.2994 6.4312 0.9801 23 6 6.3327 7.0746 1.5846 24 6 6.8929 4.8378 0.6091 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8340 0.9765 0.8892 31 1 3.8333 0.9767 -0.8907 32 1 5.8075 2.5811 -0.0013 33 1 6.2467 4.6543 -2.0232 34 1 4.5217 5.0726 -1.8829 35 1 5.9760 7.0485 -2.4601 36 1 5.0865 7.2587 -0.9298 37 1 6.5723 9.7170 -3.0409 38 1 5.3037 6.9602 1.2437 39 1 6.4296 6.6676 2.5912 40 1 6.5972 8.1319 1.5936 41 1 6.8909 4.4432 1.6251 42 1 7.6177 4.2899 0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281650012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:53 Heat of formation + Delta-G solvation = -69.347982 kcal Electronic energy + Delta-G solvation = -21440.018422 eV Core-core repulsion = 18227.570198 eV Total energy + Delta-G solvation = -3212.448223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.81400 -38.20569 -37.28767 -34.43672 -32.54514 -31.76447 -30.82012 -29.70848 -27.64935 -26.62933 -24.21608 -23.02195 -22.01906 -21.72156 -20.29601 -18.43026 -17.23901 -17.09449 -16.57325 -16.33970 -15.61337 -14.78325 -14.74139 -14.26558 -13.80430 -13.70832 -13.29940 -13.15320 -12.86556 -12.70130 -12.51526 -12.42015 -12.19390 -11.61962 -11.46795 -11.38978 -11.05246 -10.91147 -10.77689 -10.60102 -10.33014 -10.16267 -10.00647 -9.89950 -9.70030 -9.63473 -9.29723 -8.69913 -8.39123 -6.67909 -5.76786 -3.19481 2.78402 2.88151 3.38836 3.45625 3.46917 3.94544 4.49828 4.73504 4.77062 4.93005 5.01725 5.05492 5.08853 5.31054 5.39991 5.40485 5.42726 5.62558 5.65968 5.80801 5.88961 6.04012 6.08609 6.27705 6.33247 6.44571 6.48409 6.59950 6.67639 6.81157 6.82891 6.94291 6.99036 7.18031 7.41163 7.69620 7.74452 7.81579 8.43238 8.47214 9.22827 9.86375 10.43098 11.31345 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034302 B = 0.003754 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.078599 B = 7456.622893 C = 7749.782056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.045 3.955 5 C 0.509 3.491 6 O -0.519 6.519 7 N -0.725 5.725 8 C 0.151 3.849 9 H 0.086 0.914 10 C -0.148 4.148 11 C 0.174 3.826 12 N -0.585 5.585 13 C -0.253 4.253 14 H 0.066 0.934 15 C 0.003 3.997 16 N -0.900 5.900 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.170 3.830 22 H 0.065 0.935 23 C -0.163 4.163 24 C -0.132 4.132 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.394 0.606 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.022 0.978 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -18.102 5.605 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.036 4.036 5 C 0.293 3.707 6 O -0.394 6.394 7 N -0.377 5.377 8 C 0.048 3.952 9 H 0.104 0.896 10 C -0.188 4.188 11 C 0.047 3.953 12 N -0.307 5.307 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.543 5.543 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.062 3.938 22 H 0.083 0.917 23 C -0.222 4.222 24 C -0.172 4.172 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.227 0.773 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.749 -17.151 5.485 18.902 hybrid contribution 1.165 -0.319 -0.662 1.378 sum -4.584 -17.470 4.823 18.694 Atomic orbital electron populations 1.21729 0.93457 1.02110 1.03556 1.22535 0.95991 0.83581 1.00040 1.88048 1.18674 1.26089 1.95388 1.22229 0.83800 0.95306 1.02232 1.20175 0.83147 0.90205 0.77192 1.90742 1.49312 1.51632 1.47670 1.46233 1.06340 1.09654 1.75446 1.21113 0.96722 0.79152 0.98239 0.89638 1.22578 1.00213 1.01250 0.94746 1.20750 0.86739 0.88457 0.99323 1.44174 1.12518 1.64067 1.09918 1.19170 0.86818 1.13559 1.18757 0.91631 1.25052 0.96630 0.96243 1.01644 1.70038 1.20897 1.28037 1.35377 0.86303 0.81681 0.77558 0.81277 1.21509 1.21814 1.20482 1.20436 0.97341 0.89281 0.86767 0.91659 1.22306 1.00882 1.01378 0.97659 1.22300 0.95282 1.00369 0.99215 0.91626 0.91074 0.91681 0.93272 0.93319 0.90587 0.90506 0.77266 0.92687 0.92896 0.89280 0.96031 0.93600 0.93179 0.94502 0.92584 0.92586 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.15 0.38 -0.83 16 2 C 0.06 0.49 6.66 37.15 0.25 0.74 16 3 O -0.36 -4.84 9.88 -55.14 -0.54 -5.38 16 4 C 0.04 0.49 6.42 36.00 0.23 0.72 16 5 C 0.51 7.83 7.87 -10.99 -0.09 7.75 16 6 O -0.52 -10.69 16.16 -14.35 -0.23 -10.92 16 7 N -0.72 -10.08 5.08 -53.77 -0.27 -10.36 16 8 C 0.15 2.63 2.21 -67.89 -0.15 2.48 16 9 H 0.09 1.70 5.94 -51.93 -0.31 1.39 16 10 C -0.15 -2.97 5.65 -26.61 -0.15 -3.12 16 11 C 0.17 4.21 4.90 -3.71 -0.02 4.20 16 12 N -0.59 -14.30 2.70 -164.77 -0.45 -14.74 16 13 C -0.25 -6.83 9.59 -15.06 -0.14 -6.97 16 14 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 15 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 16 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 17 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.17 3.42 3.28 -67.60 -0.22 3.20 16 22 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 23 C -0.16 -3.15 9.03 37.16 0.34 -2.81 16 24 C -0.13 -2.17 5.03 -26.61 -0.13 -2.30 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.39 4.06 8.60 -40.82 -0.35 3.71 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 36 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 37 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.05 1.01 5.74 -51.93 -0.30 0.71 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -32.89 335.53 -7.76 -40.65 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.12 Total: 1.60 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 0.21 Total: 3.04 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.10 Total: -50.63 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.78 Total: -16.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.89 -7.76 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281650012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.696 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds