Wall clock time and date at job start Mon Mar 30 2020 01:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.47100 * 2 1 4 4 C 1.42908 * 113.99895 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.46924 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99964 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99772 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99912 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46000 * 34.97172 * 8 7 5 10 10 C 1.53037 * 109.46020 * 274.99853 * 8 7 5 11 11 C 1.53197 * 109.31244 * 178.61467 * 10 8 7 12 12 N 1.46927 * 108.77684 * 54.63683 * 11 10 8 13 13 C 1.36932 * 120.63086 * 126.41064 * 12 11 10 14 14 H 1.07991 * 120.00462 * 207.67892 * 13 12 11 15 15 C 1.38814 * 119.99846 * 27.67986 * 13 12 11 16 16 N 1.31618 * 120.00224 * 17.35288 * 15 13 12 17 17 Si 1.86806 * 119.99918 * 197.35418 * 15 13 12 18 18 H 1.48499 * 109.47326 * 90.00102 * 17 15 13 19 19 H 1.48501 * 109.46893 * 210.00087 * 17 15 13 20 20 H 1.48499 * 109.47084 * 329.99865 * 17 15 13 21 21 C 1.46919 * 118.73607 * 306.39374 * 12 11 10 22 22 H 1.09005 * 109.58502 * 173.39474 * 21 12 11 23 23 C 1.53001 * 109.58568 * 293.67441 * 21 12 11 24 24 C 1.53040 * 109.45861 * 154.93104 * 8 7 5 25 25 H 1.09005 * 109.46970 * 59.99797 * 1 2 3 26 26 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47256 * 300.00246 * 1 2 3 28 28 H 1.08998 * 109.47385 * 240.00233 * 2 1 3 29 29 H 1.09003 * 109.47602 * 119.99806 * 2 1 3 30 30 H 1.09004 * 109.46568 * 299.99857 * 4 3 2 31 31 H 1.08994 * 109.47043 * 59.99601 * 4 3 2 32 32 H 0.97000 * 120.00357 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.50276 * 298.56502 * 10 8 7 34 34 H 1.09002 * 109.49590 * 58.66405 * 10 8 7 35 35 H 1.08998 * 109.58256 * 174.42815 * 11 10 8 36 36 H 1.09002 * 109.58283 * 294.84617 * 11 10 8 37 37 H 0.97000 * 120.00217 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47284 * 60.00856 * 23 21 12 39 39 H 1.09002 * 109.47352 * 180.02562 * 23 21 12 40 40 H 1.08991 * 109.47180 * 300.00317 * 23 21 12 41 41 H 1.08998 * 109.50202 * 301.33844 * 24 8 7 42 42 H 1.09006 * 109.50017 * 61.43669 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8195 2.9162 -0.0012 6 8 2.9610 3.7729 -0.0016 7 7 5.1209 3.2663 -0.0013 8 6 5.4987 4.6818 -0.0024 9 1 4.7785 5.2503 0.5861 10 6 5.5089 5.2056 -1.4403 11 6 5.8705 6.6942 -1.4346 12 7 7.1420 6.8694 -0.7196 13 6 8.1876 7.5301 -1.3072 14 1 9.2028 7.2938 -1.0250 15 6 7.9425 8.5040 -2.2656 16 7 6.7436 9.0367 -2.3709 17 14 9.3144 9.0583 -3.4060 18 1 9.3168 8.2113 -4.6257 19 1 9.0971 10.4766 -3.7886 20 1 10.6197 8.9277 -2.7100 21 6 7.2702 6.3223 0.6379 22 1 8.2994 6.4312 0.9801 23 6 6.3327 7.0746 1.5846 24 6 6.8929 4.8378 0.6091 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8340 0.9765 0.8892 31 1 3.8333 0.9767 -0.8907 32 1 5.8075 2.5811 -0.0013 33 1 6.2467 4.6543 -2.0232 34 1 4.5217 5.0726 -1.8829 35 1 5.9760 7.0485 -2.4601 36 1 5.0865 7.2587 -0.9298 37 1 6.5723 9.7170 -3.0409 38 1 5.3037 6.9602 1.2437 39 1 6.4296 6.6676 2.5912 40 1 6.5972 8.1319 1.5936 41 1 6.8909 4.4432 1.6251 42 1 7.6177 4.2899 0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281650012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:52 Heat of formation + Delta-G solvation = -91.954763 kcal Electronic energy + Delta-G solvation = -21440.998725 eV Core-core repulsion = 18227.570198 eV Total energy + Delta-G solvation = -3213.428527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08469 -39.52037 -38.45034 -35.99926 -34.32346 -32.70961 -32.28704 -31.40414 -29.01473 -27.93845 -26.09537 -23.77333 -23.64965 -23.28430 -21.56767 -20.08611 -18.87839 -18.06360 -17.80899 -17.34576 -16.97431 -16.53136 -15.85881 -15.70030 -15.51314 -15.22497 -14.72649 -14.46423 -14.16957 -13.99849 -13.84522 -13.78672 -13.22637 -13.15760 -12.91010 -12.66413 -12.54834 -12.32112 -12.28403 -12.14854 -12.02832 -11.98631 -11.75804 -11.49029 -11.13488 -10.74835 -10.63734 -10.55160 -9.99446 -8.68958 -7.84896 -5.30210 1.47984 1.49312 1.58118 1.62034 1.87726 2.52551 3.06856 3.30766 3.61720 3.75703 3.90517 4.08705 4.18565 4.20399 4.30251 4.35556 4.37401 4.45252 4.52373 4.52477 4.71004 4.76719 4.83497 4.84990 4.91499 5.04254 5.09683 5.14298 5.16946 5.27744 5.34079 5.44304 5.50462 5.58980 5.69088 5.75899 6.15173 6.41341 6.64924 7.16089 7.31942 7.88284 8.40695 9.21693 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034302 B = 0.003754 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.078599 B = 7456.622893 C = 7749.782056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.051 3.949 5 C 0.502 3.498 6 O -0.581 6.581 7 N -0.706 5.706 8 C 0.161 3.839 9 H 0.059 0.941 10 C -0.133 4.133 11 C 0.185 3.815 12 N -0.600 5.600 13 C -0.257 4.257 14 H 0.074 0.926 15 C -0.054 4.054 16 N -0.937 5.937 17 Si 0.967 3.033 18 H -0.287 1.287 19 H -0.300 1.300 20 H -0.265 1.265 21 C 0.159 3.841 22 H 0.072 0.928 23 C -0.154 4.154 24 C -0.116 4.116 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.418 0.582 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.053 0.947 36 H -0.012 1.012 37 H 0.247 0.753 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.027 0.973 41 H 0.093 0.907 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 -21.489 6.662 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 O -0.326 6.326 4 C -0.028 4.028 5 C 0.289 3.711 6 O -0.460 6.460 7 N -0.360 5.360 8 C 0.056 3.944 9 H 0.077 0.923 10 C -0.173 4.173 11 C 0.058 3.942 12 N -0.322 5.322 13 C -0.387 4.387 14 H 0.092 0.908 15 C -0.249 4.249 16 N -0.584 5.584 17 Si 0.795 3.205 18 H -0.214 1.214 19 H -0.227 1.227 20 H -0.189 1.189 21 C 0.052 3.948 22 H 0.090 0.910 23 C -0.213 4.213 24 C -0.155 4.155 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.255 0.745 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.006 0.994 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.112 0.888 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.053 -20.614 6.572 22.013 hybrid contribution 0.616 0.709 -0.934 1.325 sum -3.437 -19.905 5.638 20.972 Atomic orbital electron populations 1.21790 0.93552 1.03464 1.02261 1.22783 0.96050 0.81961 1.01870 1.88004 1.19946 1.28868 1.95809 1.22311 0.83341 0.91744 1.05433 1.21119 0.82605 0.91955 0.75401 1.90725 1.51013 1.53803 1.50449 1.45906 1.06917 1.08546 1.74616 1.20710 0.97031 0.81014 0.95617 0.92281 1.22331 0.99457 0.98349 0.97169 1.20406 0.86223 0.90775 0.96796 1.44388 1.11695 1.64149 1.11953 1.19564 0.87810 1.12871 1.18455 0.90822 1.25834 0.98700 0.96939 1.03476 1.70216 1.23052 1.28975 1.36130 0.85270 0.79589 0.76342 0.79268 1.21384 1.22719 1.18901 1.20730 0.97966 0.91548 0.84512 0.90978 1.22197 0.99539 0.99876 0.99720 1.22127 0.94278 0.97526 1.01616 0.93078 0.88371 0.92846 0.91532 0.91188 0.86781 0.87399 0.74472 0.91812 0.94198 0.92908 0.99412 0.94354 0.94957 0.90594 0.95327 0.88826 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.41 -10.07 9.88 -129.94 -1.28 -11.36 16 4 C 0.05 0.95 6.42 71.24 0.46 1.41 16 5 C 0.50 14.60 7.87 87.66 0.69 15.29 16 6 O -0.58 -24.25 16.16 16.01 0.26 -23.99 16 7 N -0.71 -17.68 5.08 -442.42 -2.25 -19.92 16 8 C 0.16 5.41 2.21 45.02 0.10 5.51 16 9 H 0.06 2.36 5.94 -2.39 -0.01 2.35 16 10 C -0.13 -5.40 5.65 30.67 0.17 -5.23 16 11 C 0.18 9.37 4.90 86.36 0.42 9.79 16 12 N -0.60 -29.59 2.70 -675.22 -1.82 -31.41 16 13 C -0.26 -13.89 9.59 84.03 0.81 -13.08 16 14 H 0.07 3.80 7.89 -2.92 -0.02 3.78 16 15 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 16 N -0.94 -56.91 11.19 21.65 0.24 -56.67 16 17 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 21 C 0.16 6.19 3.28 44.98 0.15 6.34 16 22 H 0.07 2.71 7.93 -2.38 -0.02 2.69 16 23 C -0.15 -5.90 9.03 71.98 0.65 -5.25 16 24 C -0.12 -3.44 5.03 30.67 0.15 -3.29 16 25 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.42 6.68 8.60 -92.71 -0.80 5.88 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 3.04 6.04 -2.39 -0.01 3.03 16 36 H -0.01 -0.69 7.50 -2.39 -0.02 -0.70 16 37 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.03 1.33 5.74 -2.39 -0.01 1.31 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -76.58 335.53 2.61 -73.97 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.20 Total: 13.73 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.24 Total: 8.55 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -3.83 Total: -108.00 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.02 Total: -35.35 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.58 2.61 -73.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281650012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.985 kcal (2) G-P(sol) polarization free energy of solvation -76.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds