Wall clock time and date at job start Mon Mar 30 2020 01:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46811 * 2 1 4 4 O 1.42901 * 109.46885 * 240.00132 * 2 1 3 5 5 C 1.52993 * 109.47259 * 120.00277 * 2 1 3 6 6 C 1.50693 * 109.47432 * 60.33210 * 5 2 1 7 7 O 1.21287 * 119.99981 * 6.09407 * 6 5 2 8 8 N 1.34783 * 120.00582 * 186.08678 * 6 5 2 9 9 C 1.46496 * 120.00287 * 180.02562 * 8 6 5 10 10 H 1.08996 * 112.91411 * 336.25741 * 9 8 6 11 11 C 1.53785 * 113.60961 * 107.50639 * 9 8 6 12 12 C 1.53784 * 87.08166 * 89.11743 * 11 9 8 13 13 H 1.09003 * 113.61438 * 270.88510 * 12 11 9 14 14 C 1.52993 * 113.69509 * 139.98994 * 12 11 9 15 15 N 1.46502 * 109.47172 * 87.46194 * 14 12 11 16 16 C 1.36938 * 119.99988 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00034 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99901 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99814 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00086 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47047 * 89.99978 * 20 18 16 22 22 H 1.48494 * 109.47475 * 210.00042 * 20 18 16 23 23 H 1.48498 * 109.47118 * 330.00158 * 20 18 16 24 24 C 1.53786 * 113.61398 * 205.00282 * 9 8 6 25 25 H 1.08998 * 109.47037 * 299.99557 * 1 2 3 26 26 H 1.08994 * 109.47589 * 59.99697 * 1 2 3 27 27 H 1.09002 * 109.46796 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46561 * 182.80565 * 3 2 1 29 29 H 1.09001 * 109.47116 * 302.80954 * 3 2 1 30 30 H 1.09002 * 109.47083 * 62.80762 * 3 2 1 31 31 H 0.96697 * 113.99952 * 300.00178 * 4 2 1 32 32 H 1.09012 * 109.47146 * 300.33664 * 5 2 1 33 33 H 1.08998 * 109.47145 * 180.33981 * 5 2 1 34 34 H 0.97003 * 119.98980 * 0.02562 * 8 6 5 35 35 H 1.08999 * 113.61053 * 203.66177 * 11 9 8 36 36 H 1.08993 * 113.61689 * 334.56818 * 11 9 8 37 37 H 1.09001 * 109.47563 * 207.46341 * 14 12 11 38 38 H 1.09006 * 109.46861 * 327.46532 * 14 12 11 39 39 H 0.96997 * 119.99698 * 0.02562 * 15 14 12 40 40 H 0.96994 * 119.99848 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.61223 * 25.43195 * 24 9 8 42 42 H 1.08998 * 113.61164 * 156.25613 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2491 6 6 1.5446 -2.1444 1.2450 7 8 0.9457 -2.5753 0.2823 8 7 1.7669 -2.9386 2.3111 9 6 1.2856 -4.3222 2.3068 10 1 0.4473 -4.4779 1.6278 11 6 2.4063 -5.3637 2.1508 12 6 2.5226 -5.3527 3.6842 13 1 3.2188 -4.6049 4.0639 14 6 2.7479 -6.7378 4.2936 15 7 4.1833 -7.0288 4.3275 16 6 4.6285 -8.2206 4.8342 17 1 3.9215 -8.9458 5.2092 18 6 5.9887 -8.4961 4.8668 19 7 6.8504 -7.6121 4.4102 20 14 6.5961 -10.1214 5.5586 21 1 6.6713 -11.1264 4.4680 22 1 7.9442 -9.9338 6.1525 23 1 5.6558 -10.5962 6.6053 24 6 1.0537 -4.8982 3.7138 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1288 1.4429 -0.0503 29 1 1.6361 1.9707 -0.8637 30 1 1.7183 1.9416 0.9141 31 1 1.7210 -1.5952 -1.2330 32 1 1.6718 -0.2109 2.1392 33 1 3.1300 -0.7160 1.2522 34 1 2.2455 -2.5938 3.0811 35 1 2.0641 -6.3160 1.7457 36 1 3.2912 -4.9801 1.6430 37 1 2.3491 -6.7578 5.3078 38 1 2.2392 -7.4882 3.6882 39 1 4.8183 -6.3774 3.9910 40 1 7.8007 -7.8044 4.4333 41 1 0.8468 -4.1387 4.4678 42 1 0.3407 -5.7223 3.7361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283034153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:41 Heat of formation + Delta-G solvation = -70.100770 kcal Electronic energy + Delta-G solvation = -20825.480867 eV Core-core repulsion = 17613.000000 eV Total energy + Delta-G solvation = -3212.480867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64448 -39.03229 -37.18446 -34.57542 -33.39662 -32.68498 -30.90007 -28.74325 -27.52227 -26.63712 -25.54579 -23.45108 -21.71715 -21.29820 -20.34375 -19.11789 -17.41775 -17.01900 -16.83031 -15.99159 -15.59147 -15.02511 -14.99755 -14.62555 -14.18572 -13.99881 -13.45770 -13.30982 -12.99383 -12.74224 -12.50952 -12.43005 -12.36392 -12.16378 -12.03993 -11.81905 -11.56569 -11.16566 -11.04107 -10.83930 -10.50679 -10.36509 -10.13242 -10.11795 -9.90392 -9.83003 -9.61874 -9.08590 -8.85495 -6.91133 -5.76565 -3.04866 2.38521 2.96960 3.43394 3.48369 3.50072 4.09925 4.35379 4.51428 4.57010 4.63594 4.74568 4.78845 4.97765 5.06365 5.09569 5.14759 5.28156 5.37098 5.56636 5.57575 5.63399 5.73814 5.74089 5.82214 5.89767 5.92983 5.97059 6.07153 6.13216 6.21088 6.27992 6.39459 6.58129 6.76384 6.90946 7.32182 7.66147 7.69713 8.07721 8.42697 9.53634 10.12551 10.46934 11.46443 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035831 B = 0.003043 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.267184 B = 9200.611124 C = 9608.893835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.146 3.854 3 C -0.140 4.140 4 O -0.568 6.568 5 C -0.174 4.174 6 C 0.521 3.479 7 O -0.546 6.546 8 N -0.705 5.705 9 C 0.113 3.887 10 H 0.100 0.900 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.087 0.913 14 C 0.162 3.838 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.138 4.138 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.388 0.612 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.403 0.597 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.068 0.932 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 16.992 -5.064 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.104 3.896 3 C -0.197 4.197 4 O -0.380 6.380 5 C -0.214 4.214 6 C 0.309 3.691 7 O -0.426 6.426 8 N -0.355 5.355 9 C 0.008 3.992 10 H 0.118 0.882 11 C -0.177 4.177 12 C -0.132 4.132 13 H 0.105 0.895 14 C 0.035 3.965 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.177 4.177 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.242 0.758 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.238 0.762 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.449 17.071 -5.769 22.485 hybrid contribution 0.712 -1.127 0.937 1.629 sum -12.738 15.944 -4.832 20.971 Atomic orbital electron populations 1.22662 0.95571 1.04297 1.01994 1.20803 0.93012 0.92081 0.83680 1.21778 1.02065 0.93447 1.02450 1.86405 1.77249 1.31263 1.43068 1.22535 1.03971 0.93105 1.01823 1.20648 0.78444 0.87641 0.82401 1.90514 1.42190 1.75902 1.34002 1.45739 1.58002 1.12309 1.19413 1.21980 0.98069 0.80465 0.98689 0.88213 1.23406 0.98455 0.98831 0.96980 1.22763 0.95413 0.99246 0.95801 0.89457 1.20634 0.87477 0.91739 0.96670 1.42350 1.00594 1.19590 1.75077 1.19245 0.90965 0.94131 1.32704 0.91242 1.24745 0.95933 0.98352 1.02074 1.69658 1.01354 1.34873 1.52408 0.86185 0.78003 0.83437 0.78552 1.21721 1.21775 1.20787 1.23313 0.98204 1.00644 0.95493 0.92374 0.92035 0.90111 0.91731 0.91616 0.91234 0.75759 0.88136 0.87691 0.76230 0.89091 0.91305 0.96421 0.96219 0.78344 0.93540 0.91304 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 8.51 37.16 0.32 -1.43 16 2 C 0.15 1.40 1.11 -90.62 -0.10 1.30 16 3 C -0.14 -1.08 8.84 37.16 0.33 -0.75 16 4 O -0.57 -7.14 12.95 -54.93 -0.71 -7.85 16 5 C -0.17 -1.45 4.98 -27.89 -0.14 -1.59 16 6 C 0.52 5.71 7.29 -10.99 -0.08 5.63 16 7 O -0.55 -7.45 11.37 -14.14 -0.16 -7.61 16 8 N -0.71 -7.26 5.26 -53.02 -0.28 -7.54 16 9 C 0.11 1.34 4.32 -67.12 -0.29 1.05 16 10 H 0.10 1.25 7.47 -51.93 -0.39 0.87 16 11 C -0.14 -2.00 7.43 -25.91 -0.19 -2.19 16 12 C -0.11 -1.70 3.63 -89.81 -0.33 -2.03 16 13 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 14 C 0.16 3.19 6.10 -4.04 -0.02 3.17 16 15 N -0.73 -18.55 5.60 -59.91 -0.34 -18.88 16 16 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.14 -1.59 7.39 -25.91 -0.19 -1.78 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.90 5.77 -51.93 -0.30 0.60 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.39 4.98 6.31 45.56 0.29 5.27 16 32 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.37 8.70 -40.82 -0.36 3.02 16 35 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 39 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 40 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -32.44 339.67 -8.12 -40.56 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.50 Total: 12.43 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -0.95 Total: -6.05 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.11 Total: -54.09 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.87 Total: -15.46 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.44 -8.12 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283034153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.541 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds