Wall clock time and date at job start Mon Mar 30 2020 01:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46811 * 2 1 4 4 O 1.42901 * 109.46885 * 240.00132 * 2 1 3 5 5 C 1.52993 * 109.47259 * 120.00277 * 2 1 3 6 6 C 1.50693 * 109.47432 * 60.33210 * 5 2 1 7 7 O 1.21287 * 119.99981 * 6.09407 * 6 5 2 8 8 N 1.34783 * 120.00582 * 186.08678 * 6 5 2 9 9 C 1.46496 * 120.00287 * 180.02562 * 8 6 5 10 10 H 1.08996 * 112.91411 * 336.25741 * 9 8 6 11 11 C 1.53785 * 113.60961 * 107.50639 * 9 8 6 12 12 C 1.53784 * 87.08166 * 89.11743 * 11 9 8 13 13 H 1.09003 * 113.61438 * 270.88510 * 12 11 9 14 14 C 1.52993 * 113.69509 * 139.98994 * 12 11 9 15 15 N 1.46502 * 109.47172 * 87.46194 * 14 12 11 16 16 C 1.36938 * 119.99988 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00034 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99901 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99814 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00086 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47047 * 89.99978 * 20 18 16 22 22 H 1.48494 * 109.47475 * 210.00042 * 20 18 16 23 23 H 1.48498 * 109.47118 * 330.00158 * 20 18 16 24 24 C 1.53786 * 113.61398 * 205.00282 * 9 8 6 25 25 H 1.08998 * 109.47037 * 299.99557 * 1 2 3 26 26 H 1.08994 * 109.47589 * 59.99697 * 1 2 3 27 27 H 1.09002 * 109.46796 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46561 * 182.80565 * 3 2 1 29 29 H 1.09001 * 109.47116 * 302.80954 * 3 2 1 30 30 H 1.09002 * 109.47083 * 62.80762 * 3 2 1 31 31 H 0.96697 * 113.99952 * 300.00178 * 4 2 1 32 32 H 1.09012 * 109.47146 * 300.33664 * 5 2 1 33 33 H 1.08998 * 109.47145 * 180.33981 * 5 2 1 34 34 H 0.97003 * 119.98980 * 0.02562 * 8 6 5 35 35 H 1.08999 * 113.61053 * 203.66177 * 11 9 8 36 36 H 1.08993 * 113.61689 * 334.56818 * 11 9 8 37 37 H 1.09001 * 109.47563 * 207.46341 * 14 12 11 38 38 H 1.09006 * 109.46861 * 327.46532 * 14 12 11 39 39 H 0.96997 * 119.99698 * 0.02562 * 15 14 12 40 40 H 0.96994 * 119.99848 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.61223 * 25.43195 * 24 9 8 42 42 H 1.08998 * 113.61164 * 156.25613 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2491 6 6 1.5446 -2.1444 1.2450 7 8 0.9457 -2.5753 0.2823 8 7 1.7669 -2.9386 2.3111 9 6 1.2856 -4.3222 2.3068 10 1 0.4473 -4.4779 1.6278 11 6 2.4063 -5.3637 2.1508 12 6 2.5226 -5.3527 3.6842 13 1 3.2188 -4.6049 4.0639 14 6 2.7479 -6.7378 4.2936 15 7 4.1833 -7.0288 4.3275 16 6 4.6285 -8.2206 4.8342 17 1 3.9215 -8.9458 5.2092 18 6 5.9887 -8.4961 4.8668 19 7 6.8504 -7.6121 4.4102 20 14 6.5961 -10.1214 5.5586 21 1 6.6713 -11.1264 4.4680 22 1 7.9442 -9.9338 6.1525 23 1 5.6558 -10.5962 6.6053 24 6 1.0537 -4.8982 3.7138 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1288 1.4429 -0.0503 29 1 1.6361 1.9707 -0.8637 30 1 1.7183 1.9416 0.9141 31 1 1.7210 -1.5952 -1.2330 32 1 1.6718 -0.2109 2.1392 33 1 3.1300 -0.7160 1.2522 34 1 2.2455 -2.5938 3.0811 35 1 2.0641 -6.3160 1.7457 36 1 3.2912 -4.9801 1.6430 37 1 2.3491 -6.7578 5.3078 38 1 2.2392 -7.4882 3.6882 39 1 4.8183 -6.3774 3.9910 40 1 7.8007 -7.8044 4.4333 41 1 0.8468 -4.1387 4.4678 42 1 0.3407 -5.7223 3.7361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283034153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:41 Heat of formation + Delta-G solvation = -93.460963 kcal Electronic energy + Delta-G solvation = -20826.493841 eV Core-core repulsion = 17613.000000 eV Total energy + Delta-G solvation = -3213.493841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54906 -40.05592 -38.08623 -36.32476 -34.53794 -33.59665 -32.76611 -29.61973 -28.19875 -28.15824 -26.62983 -25.22356 -23.09638 -22.28033 -21.13504 -20.28120 -19.07164 -18.21165 -17.66039 -16.97588 -16.68112 -16.44063 -15.98171 -15.84315 -15.49016 -15.23690 -15.08210 -14.53667 -14.20281 -13.77065 -13.59011 -13.36406 -13.16316 -13.09461 -13.02192 -12.90172 -12.75936 -12.69830 -12.40778 -12.18143 -11.93787 -11.89685 -11.72810 -11.35529 -11.15000 -10.92420 -10.86770 -10.73048 -10.02591 -8.98675 -7.95866 -5.24169 1.46536 1.48365 1.54489 1.56763 2.14002 2.55596 3.36463 3.37203 3.58509 3.59368 3.64144 3.82183 3.93905 3.95092 4.08521 4.28060 4.33250 4.55694 4.56754 4.65068 4.76187 4.78164 4.84748 4.88255 4.91974 4.93326 4.98114 5.06583 5.07250 5.15716 5.27418 5.28863 5.35953 5.44628 5.49082 5.68317 6.27139 6.51500 6.77536 7.24784 7.32988 8.10986 8.33196 9.27771 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035831 B = 0.003043 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.267184 B = 9200.611124 C = 9608.893835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.133 3.867 3 C -0.138 4.138 4 O -0.588 6.588 5 C -0.167 4.167 6 C 0.516 3.484 7 O -0.576 6.576 8 N -0.699 5.699 9 C 0.127 3.873 10 H 0.096 0.904 11 C -0.144 4.144 12 C -0.112 4.112 13 H 0.086 0.914 14 C 0.159 3.841 15 N -0.746 5.746 16 C -0.246 4.246 17 H 0.075 0.925 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.269 1.269 24 C -0.116 4.116 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.383 0.617 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.415 0.585 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.022 0.978 38 H 0.019 0.981 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.092 0.908 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.418 17.918 -3.787 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.093 3.907 3 C -0.195 4.195 4 O -0.401 6.401 5 C -0.206 4.206 6 C 0.305 3.695 7 O -0.458 6.458 8 N -0.349 5.349 9 C 0.021 3.979 10 H 0.114 0.886 11 C -0.183 4.183 12 C -0.131 4.131 13 H 0.104 0.896 14 C 0.033 3.967 15 N -0.388 5.388 16 C -0.378 4.378 17 H 0.093 0.907 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.193 1.193 24 C -0.155 4.155 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.236 0.764 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.251 0.749 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.619 18.012 -4.468 23.624 hybrid contribution 1.008 -1.403 0.509 1.801 sum -13.611 16.609 -3.959 21.835 Atomic orbital electron populations 1.22600 0.95412 1.03144 1.02887 1.21129 0.93320 0.92986 0.83289 1.21812 1.01863 0.92176 1.03691 1.86392 1.77696 1.31057 1.44910 1.22541 1.04267 0.91274 1.02561 1.21166 0.77837 0.88643 0.81834 1.90514 1.43528 1.76637 1.35079 1.45687 1.57888 1.11522 1.19851 1.21746 0.96576 0.80722 0.98888 0.88574 1.23416 0.98873 0.99572 0.96402 1.22694 0.98171 0.96601 0.95608 0.89569 1.20832 0.84332 0.94424 0.97099 1.42591 1.02814 1.18641 1.74775 1.19663 0.91321 0.95080 1.31742 0.90746 1.25581 0.96269 1.01861 1.03246 1.69814 1.01278 1.36819 1.54175 0.85137 0.77265 0.79354 0.78006 1.21532 1.22083 1.19335 1.23218 0.95394 1.01258 0.95603 0.90174 0.92451 0.92190 0.91982 0.92079 0.88516 0.76369 0.84768 0.87046 0.74856 0.89905 0.93155 0.96058 0.96337 0.79545 0.94021 0.88900 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.51 71.98 0.61 -2.54 16 2 C 0.13 2.37 1.11 -10.79 -0.01 2.36 16 3 C -0.14 -1.84 8.84 71.98 0.64 -1.20 16 4 O -0.59 -14.83 12.95 -130.15 -1.69 -16.51 16 5 C -0.17 -2.40 4.98 29.84 0.15 -2.25 16 6 C 0.52 10.60 7.29 87.65 0.64 11.24 16 7 O -0.58 -15.57 11.37 15.78 0.18 -15.39 16 8 N -0.70 -13.06 5.26 -440.03 -2.32 -15.38 16 9 C 0.13 2.82 4.32 45.52 0.20 3.01 16 10 H 0.10 2.29 7.47 -2.39 -0.02 2.28 16 11 C -0.14 -4.13 7.43 31.12 0.23 -3.89 16 12 C -0.11 -3.24 3.63 -10.27 -0.04 -3.28 16 13 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 14 C 0.16 6.16 6.10 86.38 0.53 6.69 16 15 N -0.75 -37.99 5.60 -343.44 -1.92 -39.91 16 16 C -0.25 -13.87 9.99 84.03 0.84 -13.04 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 19 N -0.97 -59.76 13.06 21.65 0.28 -59.47 16 20 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 C -0.12 -2.37 7.39 31.12 0.23 -2.14 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.31 5.77 -2.39 -0.01 1.29 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.38 10.16 6.31 -74.06 -0.47 9.69 16 32 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.41 5.85 8.70 -92.71 -0.81 5.04 16 35 H 0.08 2.49 7.90 -2.39 -0.02 2.47 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.02 0.73 7.85 -2.38 -0.02 0.71 16 39 H 0.37 20.20 7.67 -92.71 -0.71 19.49 16 40 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 Total: -1.00 -70.50 339.67 0.08 -70.42 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.96 Total: 36.92 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 4.48 Total: -9.06 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.96 Total: -114.76 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.51 Total: -31.90 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -70.50 0.08 -70.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283034153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.042 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds