Wall clock time and date at job start Mon Mar 30 2020 01:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99748 * 2 1 4 4 N 1.34771 * 120.00067 * 180.27122 * 2 1 3 5 5 C 1.47025 * 125.65133 * 359.75005 * 4 2 1 6 6 C 1.54323 * 107.27274 * 178.90311 * 5 4 2 7 7 C 1.55158 * 102.94226 * 337.80916 * 6 5 4 8 8 H 1.08997 * 111.00144 * 277.42805 * 7 6 5 9 9 C 1.52997 * 111.00185 * 153.61137 * 7 6 5 10 10 N 1.46900 * 109.47083 * 174.99748 * 9 7 6 11 11 C 1.46894 * 111.00320 * 293.95654 * 10 9 7 12 12 C 1.46898 * 111.00139 * 170.00178 * 10 9 7 13 13 C 1.53004 * 109.47029 * 284.25673 * 12 10 9 14 14 H 1.08997 * 109.47169 * 57.09039 * 13 12 10 15 15 O 1.42903 * 109.46965 * 297.08915 * 13 12 10 16 16 C 1.50702 * 109.46795 * 177.09375 * 13 12 10 17 17 H 1.07999 * 120.00694 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99726 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99926 * 179.97438 * 18 16 13 20 20 Si 1.86804 * 119.99912 * 359.97438 * 18 16 13 21 21 H 1.48499 * 109.47088 * 89.99957 * 20 18 16 22 22 H 1.48497 * 109.46834 * 209.99958 * 20 18 16 23 23 H 1.48500 * 109.46989 * 329.99857 * 20 18 16 24 24 C 1.47432 * 125.64585 * 179.44461 * 4 2 1 25 25 H 1.09004 * 109.46667 * 90.00301 * 1 2 3 26 26 H 1.08994 * 109.47457 * 209.99888 * 1 2 3 27 27 H 1.08993 * 109.47425 * 330.00510 * 1 2 3 28 28 H 1.08999 * 109.87974 * 298.32583 * 5 4 2 29 29 H 1.09005 * 109.87720 * 59.48603 * 5 4 2 30 30 H 1.09006 * 110.71626 * 96.17373 * 6 5 4 31 31 H 1.08998 * 110.71829 * 219.26798 * 6 5 4 32 32 H 1.08996 * 109.47680 * 294.99798 * 9 7 6 33 33 H 1.09004 * 109.46830 * 55.00213 * 9 7 6 34 34 H 1.09006 * 109.47082 * 65.88952 * 11 10 9 35 35 H 1.09002 * 109.47611 * 185.89209 * 11 10 9 36 36 H 1.09001 * 109.47230 * 305.89451 * 11 10 9 37 37 H 1.08997 * 109.47143 * 44.25485 * 12 10 9 38 38 H 1.09000 * 109.47551 * 164.25865 * 12 10 9 39 39 H 0.96702 * 114.00204 * 299.99960 * 15 13 12 40 40 H 0.97000 * 119.99888 * 180.02562 * 19 18 16 41 41 H 1.08994 * 110.36560 * 322.99956 * 24 4 2 42 42 H 1.08995 * 110.36810 * 85.32861 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0055 5 6 1.5747 -2.5066 -0.0067 6 6 2.7280 -3.5314 -0.0418 7 6 3.9055 -2.7095 -0.6295 8 1 3.8511 -2.6720 -1.7175 9 6 5.2513 -3.2734 -0.1696 10 7 6.3402 -2.5484 -0.8379 11 6 6.3311 -2.8017 -2.2848 12 6 7.6414 -2.8949 -0.2510 13 6 7.7973 -2.1882 1.0971 14 1 6.9708 -2.4664 1.7509 15 8 7.7908 -0.7733 0.8966 16 6 9.1007 -2.5995 1.7321 17 1 9.7524 -3.2957 1.2252 18 6 9.4611 -2.0870 2.9603 19 7 10.5982 -2.4463 3.5148 20 14 8.3341 -0.8823 3.8368 21 1 7.3887 -1.6301 4.7041 22 1 9.1472 0.0393 4.6703 23 1 7.5707 -0.0985 2.8328 24 6 3.6480 -1.3121 -0.0178 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 0.9822 -2.6461 0.8975 29 1 0.9444 -2.6274 -0.8877 30 1 2.9649 -3.8800 0.9634 31 1 2.4783 -4.3708 -0.6908 32 1 5.3451 -3.1553 0.9098 33 1 5.3085 -4.3314 -0.4258 34 1 5.4272 -2.3777 -2.7223 35 1 7.2067 -2.3391 -2.7403 36 1 6.3526 -3.8764 -2.4657 37 1 7.6982 -3.9735 -0.1044 38 1 8.4392 -2.5770 -0.9223 39 1 8.5009 -0.4539 0.3232 40 1 10.8516 -2.0861 4.3790 41 1 4.1005 -0.5374 -0.6367 42 1 4.0422 -1.2665 0.9973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307587653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:16 Heat of formation + Delta-G solvation = -77.474747 kcal Electronic energy + Delta-G solvation = -21685.225037 eV Core-core repulsion = 18472.424410 eV Total energy + Delta-G solvation = -3212.800626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08747 -38.21827 -36.93298 -35.13098 -32.36399 -32.19287 -29.93935 -29.44439 -28.76969 -26.34604 -25.39117 -23.46963 -22.04089 -20.45684 -19.83723 -19.30887 -17.29771 -17.00858 -16.56608 -15.50942 -15.14678 -14.91028 -14.71602 -14.56671 -14.30689 -13.52771 -13.43674 -13.36444 -13.04213 -12.92166 -12.70118 -12.61551 -12.34227 -12.12183 -11.91237 -11.59181 -11.45311 -11.27700 -10.95818 -10.83606 -10.69930 -10.57608 -10.27750 -9.88617 -9.84674 -8.99552 -8.67107 -8.58925 -8.23544 -7.75948 -6.10725 -4.21954 2.60196 2.97571 3.42231 3.52854 3.82429 4.12673 4.42782 4.47168 4.57853 4.73262 4.82450 5.04987 5.06544 5.18390 5.24654 5.25390 5.35600 5.46822 5.53865 5.54958 5.60989 5.65828 5.78044 5.84639 5.89871 5.99417 6.06352 6.09968 6.16935 6.23689 6.33754 6.38216 6.62082 7.26697 7.37699 7.49457 7.57204 7.71582 8.13861 8.31922 8.86097 9.16825 9.55058 10.99892 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.005210 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.869841 B = 5373.231401 C = 6121.176810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.521 3.479 3 O -0.545 6.545 4 N -0.623 5.623 5 C 0.103 3.897 6 C -0.130 4.130 7 C -0.094 4.094 8 H 0.083 0.917 9 C 0.066 3.934 10 N -0.534 5.534 11 C 0.025 3.975 12 C 0.040 3.960 13 C 0.204 3.796 14 H 0.050 0.950 15 O -0.569 6.569 16 C -0.567 4.567 17 H 0.070 0.930 18 C 0.085 3.915 19 N -0.895 5.895 20 Si 0.868 3.132 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.213 1.213 24 C 0.120 3.880 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.353 0.647 40 H 0.264 0.736 41 H 0.084 0.916 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.782 -3.057 -9.894 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.310 3.690 3 O -0.422 6.422 4 N -0.358 5.358 5 C -0.021 4.021 6 C -0.168 4.168 7 C -0.114 4.114 8 H 0.101 0.899 9 C -0.063 4.063 10 N -0.257 5.257 11 C -0.124 4.124 12 C -0.087 4.087 13 C 0.146 3.854 14 H 0.068 0.932 15 O -0.374 6.374 16 C -0.605 4.605 17 H 0.088 0.912 18 C -0.119 4.119 19 N -0.532 5.532 20 Si 0.695 3.305 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.135 1.135 24 C -0.001 4.001 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.199 0.801 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.996 -1.927 -9.293 22.134 hybrid contribution 0.267 -0.629 0.132 0.696 sum -19.729 -2.556 -9.161 21.902 Atomic orbital electron populations 1.21878 0.91813 1.04657 1.04463 1.20451 0.90222 0.82236 0.76070 1.90755 1.70749 1.30633 1.50045 1.48692 1.08308 1.05546 1.73295 1.22018 0.96423 0.82240 1.01391 1.22705 0.94258 0.97280 1.02599 1.22340 0.94085 0.94441 1.00496 0.89864 1.22076 0.89426 0.94616 1.00160 1.61992 1.04130 1.57323 1.02303 1.22409 1.02024 0.98275 0.89650 1.22874 0.88421 0.98420 0.99017 1.19667 0.96488 0.79043 0.90195 0.93213 1.86684 1.55392 1.24262 1.71075 1.21541 1.04798 1.29330 1.04803 0.91179 1.24971 0.94791 0.95428 0.96750 1.69960 1.22261 1.43720 1.17245 0.87068 0.81534 0.82293 0.79644 1.21580 1.22284 1.13539 1.22183 0.78678 0.97373 1.01896 0.89066 0.90370 0.89020 0.91390 0.91520 0.90119 0.90005 0.89999 0.94742 0.92105 0.91730 0.96412 0.94789 0.91354 0.80143 0.92619 0.89722 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.90 36.01 0.36 -1.03 16 2 C 0.52 7.09 7.96 -10.99 -0.09 7.00 16 3 O -0.54 -10.16 17.36 5.55 0.10 -10.06 16 4 N -0.62 -7.77 3.33 -170.65 -0.57 -8.34 16 5 C 0.10 0.86 6.11 -3.06 -0.02 0.84 16 6 C -0.13 -1.13 6.42 -24.90 -0.16 -1.29 16 7 C -0.09 -1.10 2.97 -88.59 -0.26 -1.36 16 8 H 0.08 0.94 6.42 -51.93 -0.33 0.61 16 9 C 0.07 0.93 4.25 -3.83 -0.02 0.91 16 10 N -0.53 -8.62 4.55 -242.92 -1.11 -9.73 16 11 C 0.02 0.33 9.26 60.06 0.56 0.89 16 12 C 0.04 0.76 4.59 -3.82 -0.02 0.75 16 13 C 0.20 4.72 2.39 -27.88 -0.07 4.65 16 14 H 0.05 1.19 6.14 -51.93 -0.32 0.88 16 15 O -0.57 -13.23 10.05 -35.23 -0.35 -13.59 16 16 C -0.57 -15.67 9.34 -34.44 -0.32 -15.99 16 17 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 18 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 19 N -0.89 -27.45 13.96 55.43 0.77 -26.68 16 20 Si 0.87 22.25 26.99 -169.99 -4.59 17.66 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 23 H -0.21 -5.43 5.30 56.52 0.30 -5.13 16 24 C 0.12 1.75 6.32 -2.64 -0.02 1.73 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.47 7.13 -51.93 -0.37 0.10 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.31 6.41 -51.93 -0.33 0.97 16 33 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.06 0.72 6.60 -51.93 -0.34 0.38 16 35 H 0.06 0.85 7.83 -51.93 -0.41 0.44 16 36 H 0.02 0.22 8.06 -51.93 -0.42 -0.20 16 37 H 0.03 0.65 8.00 -51.93 -0.42 0.24 16 38 H 0.07 1.29 7.74 -51.93 -0.40 0.89 16 39 H 0.35 7.40 9.04 45.56 0.41 7.81 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 42 H 0.07 1.20 7.90 -51.93 -0.41 0.79 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -34.44 332.89 -7.23 -41.67 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.35 Total: 4.59 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.15 Total: -0.54 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.90 Total: -44.74 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.26 Total: -23.65 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.59 Total: 17.66 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.44 -7.23 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307587653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.807 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds