Wall clock time and date at job start Mon Mar 30 2020 01:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99748 * 2 1 4 4 N 1.34771 * 120.00067 * 180.27122 * 2 1 3 5 5 C 1.47025 * 125.65133 * 359.75005 * 4 2 1 6 6 C 1.54323 * 107.27274 * 178.90311 * 5 4 2 7 7 C 1.55158 * 102.94226 * 337.80916 * 6 5 4 8 8 H 1.08997 * 111.00144 * 277.42805 * 7 6 5 9 9 C 1.52997 * 111.00185 * 153.61137 * 7 6 5 10 10 N 1.46900 * 109.47083 * 174.99748 * 9 7 6 11 11 C 1.46894 * 111.00320 * 293.95654 * 10 9 7 12 12 C 1.46898 * 111.00139 * 170.00178 * 10 9 7 13 13 C 1.53004 * 109.47029 * 284.25673 * 12 10 9 14 14 H 1.08997 * 109.47169 * 57.09039 * 13 12 10 15 15 O 1.42903 * 109.46965 * 297.08915 * 13 12 10 16 16 C 1.50702 * 109.46795 * 177.09375 * 13 12 10 17 17 H 1.07999 * 120.00694 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99726 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99926 * 179.97438 * 18 16 13 20 20 Si 1.86804 * 119.99912 * 359.97438 * 18 16 13 21 21 H 1.48499 * 109.47088 * 89.99957 * 20 18 16 22 22 H 1.48497 * 109.46834 * 209.99958 * 20 18 16 23 23 H 1.48500 * 109.46989 * 329.99857 * 20 18 16 24 24 C 1.47432 * 125.64585 * 179.44461 * 4 2 1 25 25 H 1.09004 * 109.46667 * 90.00301 * 1 2 3 26 26 H 1.08994 * 109.47457 * 209.99888 * 1 2 3 27 27 H 1.08993 * 109.47425 * 330.00510 * 1 2 3 28 28 H 1.08999 * 109.87974 * 298.32583 * 5 4 2 29 29 H 1.09005 * 109.87720 * 59.48603 * 5 4 2 30 30 H 1.09006 * 110.71626 * 96.17373 * 6 5 4 31 31 H 1.08998 * 110.71829 * 219.26798 * 6 5 4 32 32 H 1.08996 * 109.47680 * 294.99798 * 9 7 6 33 33 H 1.09004 * 109.46830 * 55.00213 * 9 7 6 34 34 H 1.09006 * 109.47082 * 65.88952 * 11 10 9 35 35 H 1.09002 * 109.47611 * 185.89209 * 11 10 9 36 36 H 1.09001 * 109.47230 * 305.89451 * 11 10 9 37 37 H 1.08997 * 109.47143 * 44.25485 * 12 10 9 38 38 H 1.09000 * 109.47551 * 164.25865 * 12 10 9 39 39 H 0.96702 * 114.00204 * 299.99960 * 15 13 12 40 40 H 0.97000 * 119.99888 * 180.02562 * 19 18 16 41 41 H 1.08994 * 110.36560 * 322.99956 * 24 4 2 42 42 H 1.08995 * 110.36810 * 85.32861 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0055 5 6 1.5747 -2.5066 -0.0067 6 6 2.7280 -3.5314 -0.0418 7 6 3.9055 -2.7095 -0.6295 8 1 3.8511 -2.6720 -1.7175 9 6 5.2513 -3.2734 -0.1696 10 7 6.3402 -2.5484 -0.8379 11 6 6.3311 -2.8017 -2.2848 12 6 7.6414 -2.8949 -0.2510 13 6 7.7973 -2.1882 1.0971 14 1 6.9708 -2.4664 1.7509 15 8 7.7908 -0.7733 0.8966 16 6 9.1007 -2.5995 1.7321 17 1 9.7524 -3.2957 1.2252 18 6 9.4611 -2.0870 2.9603 19 7 10.5982 -2.4463 3.5148 20 14 8.3341 -0.8823 3.8368 21 1 7.3887 -1.6301 4.7041 22 1 9.1472 0.0393 4.6703 23 1 7.5707 -0.0985 2.8328 24 6 3.6480 -1.3121 -0.0178 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 0.9822 -2.6461 0.8975 29 1 0.9444 -2.6274 -0.8877 30 1 2.9649 -3.8800 0.9634 31 1 2.4783 -4.3708 -0.6908 32 1 5.3451 -3.1553 0.9098 33 1 5.3085 -4.3314 -0.4258 34 1 5.4272 -2.3777 -2.7223 35 1 7.2067 -2.3391 -2.7403 36 1 6.3526 -3.8764 -2.4657 37 1 7.6982 -3.9735 -0.1044 38 1 8.4392 -2.5770 -0.9223 39 1 8.5009 -0.4539 0.3232 40 1 10.8516 -2.0861 4.3790 41 1 4.1005 -0.5374 -0.6367 42 1 4.0422 -1.2665 0.9973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307587653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:15 Heat of formation + Delta-G solvation = -105.279582 kcal Electronic energy + Delta-G solvation = -21686.430745 eV Core-core repulsion = 18472.424410 eV Total energy + Delta-G solvation = -3214.006334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07988 -39.47127 -38.27541 -36.72281 -34.41320 -33.40835 -30.88273 -30.70492 -29.98085 -27.70357 -26.87611 -24.53810 -23.38251 -21.92838 -21.00299 -20.25505 -19.33932 -18.00546 -17.56394 -16.85387 -16.65426 -16.51364 -16.22791 -15.92683 -15.36589 -15.12265 -14.87669 -14.54759 -14.38927 -14.06039 -13.79328 -13.54449 -13.37723 -13.22837 -13.03423 -12.97813 -12.83670 -12.75428 -12.48338 -12.39821 -11.91281 -11.85712 -11.70377 -11.44075 -11.03094 -10.97631 -10.81801 -10.13059 -9.67312 -9.07447 -8.37528 -6.50686 1.34714 1.41915 1.60428 1.73954 2.06674 2.41707 2.98142 3.02336 3.55640 3.64928 3.82473 3.95620 4.13559 4.20021 4.31630 4.39508 4.42806 4.48646 4.53489 4.56053 4.63059 4.66578 4.72162 4.80467 4.85399 4.93418 4.98451 5.00247 5.04442 5.09396 5.16108 5.26579 5.40206 5.48277 5.48785 6.07677 6.17111 6.29811 6.57183 6.62417 7.14341 7.22887 7.38954 8.76756 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.005210 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.869841 B = 5373.231401 C = 6121.176810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.508 3.492 3 O -0.611 6.611 4 N -0.624 5.624 5 C 0.098 3.902 6 C -0.123 4.123 7 C -0.082 4.082 8 H 0.095 0.905 9 C 0.065 3.935 10 N -0.549 5.549 11 C 0.027 3.973 12 C 0.055 3.945 13 C 0.211 3.789 14 H 0.043 0.957 15 O -0.576 6.576 16 C -0.565 4.565 17 H 0.040 0.960 18 C 0.035 3.965 19 N -0.938 5.938 20 Si 0.931 3.069 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.213 1.213 24 C 0.120 3.880 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.032 0.968 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.363 0.637 40 H 0.267 0.733 41 H 0.050 0.950 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.044 -4.172 -11.134 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.299 3.701 3 O -0.493 6.493 4 N -0.357 5.357 5 C -0.023 4.023 6 C -0.161 4.161 7 C -0.101 4.101 8 H 0.114 0.886 9 C -0.063 4.063 10 N -0.273 5.273 11 C -0.120 4.120 12 C -0.073 4.073 13 C 0.152 3.848 14 H 0.061 0.939 15 O -0.382 6.382 16 C -0.603 4.603 17 H 0.058 0.942 18 C -0.165 4.165 19 N -0.578 5.578 20 Si 0.756 3.244 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.135 1.135 24 C -0.003 4.003 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.210 0.790 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.291 -3.090 -10.553 25.756 hybrid contribution 1.320 -0.325 0.467 1.437 sum -21.971 -3.416 -10.086 24.416 Atomic orbital electron populations 1.21889 0.87160 1.06133 1.06335 1.21547 0.92412 0.81457 0.74640 1.90719 1.72432 1.33012 1.53152 1.48861 1.07446 1.07230 1.72196 1.22350 0.96551 0.79460 1.03981 1.22750 0.92583 0.97815 1.02928 1.22231 0.93969 0.92962 1.00967 0.88643 1.22108 0.89958 0.95581 0.98646 1.61894 1.02988 1.58276 1.04110 1.22437 1.02860 0.99350 0.87397 1.22492 0.90458 0.97462 0.96917 1.19489 0.93709 0.79328 0.92241 0.93901 1.86629 1.55840 1.24143 1.71573 1.21891 1.05958 1.27924 1.04499 0.94193 1.25727 0.95900 0.97142 0.97753 1.70068 1.24103 1.45587 1.18008 0.86095 0.79651 0.80207 0.78435 1.21142 1.22394 1.13480 1.21963 0.80408 0.98306 0.99603 0.86783 0.87368 0.89049 0.89261 0.88361 0.90427 0.86821 0.92460 0.92969 0.90453 0.91868 0.94966 0.95140 0.91380 0.78970 0.92457 0.93172 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.90 71.24 0.71 -1.38 16 2 C 0.51 13.33 7.96 87.66 0.70 14.03 16 3 O -0.61 -23.49 17.36 -3.04 -0.05 -23.55 16 4 N -0.62 -14.55 3.33 -812.21 -2.70 -17.26 16 5 C 0.10 1.23 6.11 86.73 0.53 1.76 16 6 C -0.12 -1.66 6.42 31.78 0.20 -1.45 16 7 C -0.08 -1.74 2.97 -9.48 -0.03 -1.77 16 8 H 0.10 1.84 6.42 -2.39 -0.02 1.82 16 9 C 0.07 1.75 4.25 86.30 0.37 2.12 16 10 N -0.55 -17.17 4.55 -922.46 -4.20 -21.37 16 11 C 0.03 0.66 9.26 127.69 1.18 1.84 16 12 C 0.05 2.08 4.59 86.31 0.40 2.47 16 13 C 0.21 9.81 2.39 29.85 0.07 9.88 16 14 H 0.04 2.08 6.14 -2.39 -0.01 2.06 16 15 O -0.58 -26.78 10.05 -148.98 -1.50 -28.28 16 16 C -0.56 -31.84 9.34 25.60 0.24 -31.60 16 17 H 0.04 2.45 7.99 -2.91 -0.02 2.42 16 18 C 0.03 2.04 5.47 84.66 0.46 2.50 16 19 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 20 Si 0.93 46.97 26.99 68.60 1.85 48.82 16 21 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 23 H -0.21 -10.61 5.30 99.48 0.53 -10.08 16 24 C 0.12 3.50 6.32 86.78 0.55 4.05 16 25 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 0.79 7.13 -2.39 -0.02 0.78 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 0.82 7.87 -2.39 -0.02 0.80 16 29 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.08 1.13 8.04 -2.38 -0.02 1.11 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.82 6.41 -2.39 -0.02 1.80 16 33 H 0.05 1.23 8.06 -2.38 -0.02 1.21 16 34 H 0.08 1.63 6.60 -2.38 -0.02 1.61 16 35 H 0.06 1.55 7.83 -2.39 -0.02 1.53 16 36 H 0.03 0.70 8.06 -2.39 -0.02 0.68 16 37 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 38 H 0.07 2.55 7.74 -2.39 -0.02 2.53 16 39 H 0.36 15.21 9.04 -74.06 -0.67 14.54 16 40 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 42 H 0.04 1.43 7.90 -2.39 -0.02 1.41 16 Total: -1.00 -78.58 332.89 -0.78 -79.36 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.15 Total: 18.36 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.38 Total: 2.44 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -6.60 Total: -97.15 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -1.55 Total: -51.83 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.85 Total: 48.82 kcal Total: -78.58 -0.78 -79.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307587653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.924 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds