Wall clock time and date at job start Mon Mar 30 2020 00:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46912 * 2 1 4 4 C 1.36936 * 120.00406 * 275.31128 * 3 2 1 5 5 H 1.08000 * 119.99837 * 37.57618 * 4 3 2 6 6 C 1.38814 * 120.00114 * 217.58409 * 4 3 2 7 7 N 1.31615 * 119.99977 * 21.42162 * 6 4 3 8 8 Si 1.86800 * 120.00042 * 201.42006 * 6 4 3 9 9 H 1.48507 * 109.47100 * 59.99661 * 8 6 4 10 10 H 1.48499 * 109.47192 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47175 * 300.00039 * 8 6 4 12 12 C 1.46502 * 119.99879 * 95.31633 * 3 2 1 13 13 C 1.53005 * 109.46612 * 269.99585 * 12 3 2 14 14 C 1.53004 * 109.46826 * 179.97438 * 13 12 3 15 15 N 1.46498 * 109.46936 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99863 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99852 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99880 * 180.02562 * 16 15 14 19 19 H 1.08996 * 110.33422 * 302.75331 * 18 16 15 20 20 C 1.54481 * 110.37019 * 65.00532 * 18 16 15 21 21 C 1.54509 * 104.06435 * 142.91841 * 20 18 16 22 22 C 1.54482 * 104.18251 * 359.92770 * 21 20 18 23 23 O 1.44420 * 110.46361 * 180.43800 * 18 16 15 24 24 H 1.08997 * 109.47384 * 59.99490 * 1 2 3 25 25 H 1.08997 * 109.46980 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46926 * 299.99869 * 1 2 3 27 27 H 1.09004 * 109.46442 * 240.00728 * 2 1 3 28 28 H 1.08997 * 109.47384 * 120.00510 * 2 1 3 29 29 H 0.97004 * 120.00085 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47455 * 149.99879 * 12 3 2 31 31 H 1.09004 * 109.47000 * 29.99381 * 12 3 2 32 32 H 1.09000 * 109.46816 * 60.00362 * 13 12 3 33 33 H 1.08995 * 109.47414 * 299.99810 * 13 12 3 34 34 H 1.09007 * 109.46885 * 60.00334 * 14 13 12 35 35 H 1.08995 * 109.47273 * 300.00269 * 14 13 12 36 36 H 0.97002 * 120.00571 * 0.02562 * 15 14 13 37 37 H 1.09000 * 110.51166 * 24.27335 * 20 18 16 38 38 H 1.08999 * 110.50773 * 261.56731 * 20 18 16 39 39 H 1.08992 * 110.50925 * 118.64167 * 21 20 18 40 40 H 1.08998 * 110.50863 * 241.21984 * 21 20 18 41 41 H 1.09004 * 110.36482 * 94.92068 * 22 21 20 42 42 H 1.09000 * 110.37199 * 217.25558 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0994 4.2796 -2.6584 9 1 1.9627 5.1787 -2.3344 10 1 4.3618 5.0615 -2.6660 11 1 2.8844 3.6726 -3.9966 12 6 2.3733 2.0326 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5131 3.4180 3.1563 15 7 0.3349 4.0941 3.7049 16 6 0.4245 4.7643 4.8709 17 8 1.4806 4.8080 5.4656 18 6 -0.7876 5.4593 5.4355 19 1 -1.1804 6.1790 4.7174 20 6 -1.8735 4.4265 5.8108 21 6 -2.5018 4.9950 7.1029 22 6 -1.7217 6.3035 7.3591 23 8 -0.4591 6.1174 6.6784 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.0489 3.4032 -0.7830 30 1 3.1617 2.7641 1.0860 31 1 2.7256 1.2832 1.9721 32 1 0.3542 2.0067 2.0139 33 1 0.7903 3.4876 1.1278 34 1 2.3017 4.1494 2.9793 35 1 1.8652 2.6684 3.8649 36 1 -0.5099 4.0588 3.2295 37 1 -1.4241 3.4520 6.0014 38 1 -2.6218 4.3553 5.0214 39 1 -3.5607 5.2048 6.9523 40 1 -2.3650 4.3003 7.9316 41 1 -2.2579 7.1536 6.9372 42 1 -1.5620 6.4470 8.4278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316885356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:57 Heat of formation + Delta-G solvation = -73.608772 kcal Electronic energy + Delta-G solvation = -21002.138317 eV Core-core repulsion = 17789.505332 eV Total energy + Delta-G solvation = -3212.632985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27844 -38.42717 -36.41033 -34.76705 -32.47661 -31.86435 -31.40176 -29.75392 -28.39251 -25.44163 -24.09195 -23.13739 -21.79842 -21.04691 -20.48164 -19.90402 -17.53225 -16.84714 -16.62426 -16.02137 -15.41822 -15.06354 -14.80758 -14.72653 -14.12487 -13.90592 -13.72470 -13.34658 -13.16245 -12.62112 -12.36661 -12.11054 -11.97523 -11.68606 -11.57441 -11.41598 -11.15222 -11.08244 -11.01197 -10.73837 -10.57954 -10.48383 -10.21179 -10.03848 -9.72043 -9.55075 -9.49530 -8.84865 -8.46825 -6.56416 -5.78391 -3.37842 2.67630 2.96699 3.36046 3.43118 3.43745 3.87596 4.23557 4.45970 4.48268 4.58033 4.78271 4.85656 5.07032 5.25296 5.26209 5.35940 5.40231 5.46652 5.60437 5.66146 5.68838 5.83201 5.98032 6.08407 6.27924 6.35076 6.42595 6.42706 6.48332 6.58636 6.74885 6.78568 6.90764 7.09113 7.17322 7.63297 7.68266 7.82192 8.33198 8.52647 9.19927 9.82254 10.41197 11.21123 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021922 B = 0.003879 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.926948 B = 7215.926630 C = 7826.297819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.263 4.263 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.121 3.879 15 N -0.722 5.722 16 C 0.513 3.487 17 O -0.523 6.523 18 C 0.057 3.943 19 H 0.094 0.906 20 C -0.145 4.145 21 C -0.153 4.153 22 C 0.041 3.959 23 O -0.346 6.346 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.256 0.744 30 H 0.095 0.905 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.398 0.602 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.825 3.094 11.958 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.393 4.393 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.002 4.002 15 N -0.375 5.375 16 C 0.297 3.703 17 O -0.399 6.399 18 C -0.005 4.005 19 H 0.112 0.888 20 C -0.183 4.183 21 C -0.191 4.191 22 C -0.036 4.036 23 O -0.263 6.263 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.615 3.251 12.449 18.733 hybrid contribution -0.788 0.732 -0.970 1.448 sum -14.403 3.983 11.479 18.843 Atomic orbital electron populations 1.22369 1.00205 0.98864 1.01073 1.20846 0.91653 0.87415 0.98721 1.43736 1.76077 1.08166 1.02488 1.18939 1.04710 1.21407 0.94213 0.92376 1.25187 0.94183 1.01260 0.98039 1.69987 1.03171 1.37271 1.42344 0.86491 0.76942 0.82387 0.81667 1.20942 1.21577 1.20719 1.20796 0.94429 0.96659 0.85753 1.22543 1.02405 0.99872 0.93832 1.21508 0.86941 0.96126 0.95617 1.46083 1.14709 1.53855 1.22845 1.20154 0.89462 0.79407 0.81305 1.90730 1.29819 1.60000 1.59308 1.22889 0.93508 0.94787 0.89303 0.88830 1.22927 0.97423 0.99572 0.98412 1.22938 1.00361 0.97783 0.98046 1.23534 0.84808 0.96717 0.98556 1.89318 1.27534 1.78840 1.30650 0.93284 0.94648 0.93828 0.93898 0.94843 0.93416 0.88734 0.95658 0.93044 0.91671 0.91411 0.91923 0.76785 0.89980 0.89459 0.90150 0.90345 0.91958 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 10.21 37.16 0.38 -2.53 16 2 C 0.14 2.91 6.44 -4.04 -0.03 2.88 16 3 N -0.58 -14.13 2.43 -173.23 -0.42 -14.55 16 4 C -0.26 -7.02 9.45 -15.06 -0.14 -7.16 16 5 H 0.06 1.55 7.92 -52.49 -0.42 1.14 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -25.24 11.47 55.49 0.64 -24.61 16 8 Si 0.90 21.27 29.60 -169.99 -5.03 16.24 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 C 0.15 3.39 5.33 -4.04 -0.02 3.37 16 13 C -0.15 -2.66 5.65 -26.73 -0.15 -2.81 16 14 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 15 N -0.72 -10.08 5.54 -60.29 -0.33 -10.42 16 16 C 0.51 7.91 7.08 -10.98 -0.08 7.84 16 17 O -0.52 -10.63 16.56 -13.60 -0.23 -10.86 16 18 C 0.06 0.66 3.71 -27.10 -0.10 0.56 16 19 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 20 C -0.15 -1.23 6.61 -25.16 -0.17 -1.39 16 21 C -0.15 -1.09 7.08 -25.16 -0.18 -1.27 16 22 C 0.04 0.35 7.65 37.94 0.29 0.64 16 23 O -0.35 -4.70 10.92 -54.39 -0.59 -5.30 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.73 6.64 -51.93 -0.34 0.39 16 27 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.09 2.45 5.52 -51.93 -0.29 2.16 16 31 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 32 H 0.05 0.87 6.64 -51.93 -0.34 0.52 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.40 4.36 8.47 -40.82 -0.35 4.02 16 37 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -32.52 342.40 -8.28 -40.80 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.17 Total: 1.10 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.30 Total: 2.44 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.12 Total: -49.57 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.82 Total: -16.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.52 -8.28 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316885356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.814 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds