Wall clock time and date at job start Mon Mar 30 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46912 * 2 1 4 4 C 1.36936 * 120.00406 * 275.31128 * 3 2 1 5 5 H 1.08000 * 119.99837 * 37.57618 * 4 3 2 6 6 C 1.38814 * 120.00114 * 217.58409 * 4 3 2 7 7 N 1.31615 * 119.99977 * 21.42162 * 6 4 3 8 8 Si 1.86800 * 120.00042 * 201.42006 * 6 4 3 9 9 H 1.48507 * 109.47100 * 59.99661 * 8 6 4 10 10 H 1.48499 * 109.47192 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47175 * 300.00039 * 8 6 4 12 12 C 1.46502 * 119.99879 * 95.31633 * 3 2 1 13 13 C 1.53005 * 109.46612 * 269.99585 * 12 3 2 14 14 C 1.53004 * 109.46826 * 179.97438 * 13 12 3 15 15 N 1.46498 * 109.46936 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99863 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99852 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99880 * 180.02562 * 16 15 14 19 19 H 1.08996 * 110.33422 * 302.75331 * 18 16 15 20 20 C 1.54481 * 110.37019 * 65.00532 * 18 16 15 21 21 C 1.54509 * 104.06435 * 142.91841 * 20 18 16 22 22 C 1.54482 * 104.18251 * 359.92770 * 21 20 18 23 23 O 1.44420 * 110.46361 * 180.43800 * 18 16 15 24 24 H 1.08997 * 109.47384 * 59.99490 * 1 2 3 25 25 H 1.08997 * 109.46980 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46926 * 299.99869 * 1 2 3 27 27 H 1.09004 * 109.46442 * 240.00728 * 2 1 3 28 28 H 1.08997 * 109.47384 * 120.00510 * 2 1 3 29 29 H 0.97004 * 120.00085 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47455 * 149.99879 * 12 3 2 31 31 H 1.09004 * 109.47000 * 29.99381 * 12 3 2 32 32 H 1.09000 * 109.46816 * 60.00362 * 13 12 3 33 33 H 1.08995 * 109.47414 * 299.99810 * 13 12 3 34 34 H 1.09007 * 109.46885 * 60.00334 * 14 13 12 35 35 H 1.08995 * 109.47273 * 300.00269 * 14 13 12 36 36 H 0.97002 * 120.00571 * 0.02562 * 15 14 13 37 37 H 1.09000 * 110.51166 * 24.27335 * 20 18 16 38 38 H 1.08999 * 110.50773 * 261.56731 * 20 18 16 39 39 H 1.08992 * 110.50925 * 118.64167 * 21 20 18 40 40 H 1.08998 * 110.50863 * 241.21984 * 21 20 18 41 41 H 1.09004 * 110.36482 * 94.92068 * 22 21 20 42 42 H 1.09000 * 110.37199 * 217.25558 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0994 4.2796 -2.6584 9 1 1.9627 5.1787 -2.3344 10 1 4.3618 5.0615 -2.6660 11 1 2.8844 3.6726 -3.9966 12 6 2.3733 2.0326 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5131 3.4180 3.1563 15 7 0.3349 4.0941 3.7049 16 6 0.4245 4.7643 4.8709 17 8 1.4806 4.8080 5.4656 18 6 -0.7876 5.4593 5.4355 19 1 -1.1804 6.1790 4.7174 20 6 -1.8735 4.4265 5.8108 21 6 -2.5018 4.9950 7.1029 22 6 -1.7217 6.3035 7.3591 23 8 -0.4591 6.1174 6.6784 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.0489 3.4032 -0.7830 30 1 3.1617 2.7641 1.0860 31 1 2.7256 1.2832 1.9721 32 1 0.3542 2.0067 2.0139 33 1 0.7903 3.4876 1.1278 34 1 2.3017 4.1494 2.9793 35 1 1.8652 2.6684 3.8649 36 1 -0.5099 4.0588 3.2295 37 1 -1.4241 3.4520 6.0014 38 1 -2.6218 4.3553 5.0214 39 1 -3.5607 5.2048 6.9523 40 1 -2.3650 4.3003 7.9316 41 1 -2.2579 7.1536 6.9372 42 1 -1.5620 6.4470 8.4278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316885356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:56 Heat of formation + Delta-G solvation = -95.063841 kcal Electronic energy + Delta-G solvation = -21003.068679 eV Core-core repulsion = 17789.505332 eV Total energy + Delta-G solvation = -3213.563347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30804 -39.47641 -38.14666 -36.21856 -33.81879 -33.37197 -32.64686 -30.82697 -29.93134 -27.08386 -25.53014 -24.32164 -22.55960 -22.46434 -22.04239 -21.29182 -18.62248 -18.57302 -17.58859 -17.18188 -16.94376 -16.43038 -16.07035 -15.96330 -15.61271 -15.27984 -14.89662 -14.62433 -14.32436 -14.24074 -14.04180 -13.24944 -13.17574 -12.86976 -12.74487 -12.70878 -12.66186 -12.53663 -12.35942 -12.25051 -12.13719 -11.92669 -11.68888 -11.46255 -11.23888 -11.06317 -10.68740 -10.48059 -10.16765 -8.53855 -7.80042 -5.44455 1.46640 1.49230 1.49336 1.55601 1.88790 2.51882 3.06616 3.25356 3.47784 3.66138 3.69388 3.91675 4.08008 4.14945 4.22702 4.30531 4.39064 4.46041 4.54491 4.67841 4.73665 4.78055 4.81199 4.90036 4.92691 5.00304 5.01926 5.05184 5.13807 5.17404 5.35122 5.38123 5.46875 5.61962 5.70602 5.73927 5.85220 6.48836 6.50929 7.17014 7.20039 7.89876 8.42338 9.14499 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021922 B = 0.003879 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.926948 B = 7215.926630 C = 7826.297819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.266 4.266 5 H 0.057 0.943 6 C -0.035 4.035 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.297 1.297 11 H -0.274 1.274 12 C 0.150 3.850 13 C -0.121 4.121 14 C 0.133 3.867 15 N -0.707 5.707 16 C 0.508 3.492 17 O -0.582 6.582 18 C 0.058 3.942 19 H 0.122 0.878 20 C -0.141 4.141 21 C -0.147 4.147 22 C 0.032 3.968 23 O -0.390 6.390 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.044 0.956 29 H 0.250 0.750 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.122 3.150 12.097 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.396 4.396 5 H 0.074 0.926 6 C -0.233 4.233 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.223 1.223 11 H -0.200 1.200 12 C 0.023 3.977 13 C -0.161 4.161 14 C 0.008 3.992 15 N -0.360 5.360 16 C 0.294 3.706 17 O -0.461 6.461 18 C -0.003 4.003 19 H 0.139 0.861 20 C -0.179 4.179 21 C -0.185 4.185 22 C -0.044 4.044 23 O -0.309 6.309 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.254 0.746 37 H 0.086 0.914 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.988 3.288 12.573 21.389 hybrid contribution 0.245 0.645 -0.976 1.195 sum -16.743 3.934 11.598 20.744 Atomic orbital electron populations 1.22164 0.97084 1.00800 1.00927 1.21005 0.93987 0.85649 0.98549 1.43984 1.76499 1.09572 1.02238 1.19171 1.04161 1.21377 0.94934 0.92573 1.25859 0.93961 1.03334 1.00128 1.70128 1.03797 1.38079 1.44258 0.85555 0.76546 0.79887 0.79770 1.20231 1.22306 1.19989 1.20695 0.95347 0.96081 0.85571 1.22161 1.00715 0.99599 0.93634 1.21156 0.87486 0.95460 0.95069 1.45844 1.14548 1.52997 1.22625 1.21005 0.90101 0.78668 0.80799 1.90700 1.32350 1.62133 1.60914 1.23026 0.91940 0.95896 0.89395 0.86111 1.22984 0.96947 0.97787 1.00179 1.22952 1.01633 0.96706 0.97204 1.23817 0.83457 0.98330 0.98765 1.89279 1.30649 1.79274 1.31725 0.94444 0.91670 0.92858 0.95370 0.93792 0.94053 0.92379 0.95506 0.90784 0.92723 0.94009 0.92280 0.74575 0.91380 0.86198 0.87207 0.90507 0.89984 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 10.21 71.98 0.73 -4.12 16 2 C 0.13 5.39 6.44 86.38 0.56 5.95 16 3 N -0.60 -28.98 2.43 -701.99 -1.71 -30.69 16 4 C -0.27 -14.22 9.45 84.03 0.79 -13.42 16 5 H 0.06 2.98 7.92 -2.91 -0.02 2.96 16 6 C -0.04 -1.94 4.95 84.86 0.42 -1.52 16 7 N -0.92 -53.80 11.47 21.65 0.25 -53.56 16 8 Si 0.95 44.07 29.60 68.60 2.03 46.10 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 12 C 0.15 6.81 5.33 86.38 0.46 7.27 16 13 C -0.12 -4.29 5.65 30.60 0.17 -4.12 16 14 C 0.13 4.48 5.67 86.38 0.49 4.97 16 15 N -0.71 -18.90 5.54 -463.04 -2.56 -21.46 16 16 C 0.51 15.46 7.08 87.66 0.62 16.08 16 17 O -0.58 -24.35 16.56 15.28 0.25 -24.10 16 18 C 0.06 1.24 3.71 30.35 0.11 1.35 16 19 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 20 C -0.14 -1.95 6.61 31.61 0.21 -1.74 16 21 C -0.15 -1.61 7.08 31.61 0.22 -1.39 16 22 C 0.03 0.48 7.65 72.49 0.55 1.03 16 23 O -0.39 -10.29 10.92 -130.66 -1.43 -11.72 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.61 6.64 -2.38 -0.02 1.59 16 27 H 0.03 1.19 8.08 -2.38 -0.02 1.18 16 28 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 29 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.06 3.12 5.52 -2.39 -0.01 3.10 16 31 H 0.03 1.17 7.86 -2.38 -0.02 1.15 16 32 H 0.07 2.31 6.64 -2.39 -0.02 2.29 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.42 8.02 8.47 -92.71 -0.79 7.24 16 37 H 0.07 1.14 7.87 -2.39 -0.02 1.12 16 38 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.08 342.40 2.39 -70.69 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.21 Total: 14.39 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.35 Total: 10.34 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.03 Total: -105.71 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.17 Total: -35.81 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -73.08 2.39 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316885356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.377 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds