Wall clock time and date at job start Mon Mar 30 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47224 * 2 1 4 4 C 1.36928 * 119.99956 * 93.46145 * 3 2 1 5 5 H 1.08000 * 120.00059 * 214.02366 * 4 3 2 6 6 C 1.38816 * 120.00295 * 34.30588 * 4 3 2 7 7 N 1.31623 * 119.99652 * 22.04660 * 6 4 3 8 8 Si 1.86801 * 120.00381 * 202.04626 * 6 4 3 9 9 H 1.48494 * 109.47030 * 59.99791 * 8 6 4 10 10 H 1.48492 * 109.47096 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46520 * 299.99868 * 8 6 4 12 12 C 1.46502 * 119.99656 * 273.46158 * 3 2 1 13 13 C 1.53001 * 109.47171 * 269.99453 * 12 3 2 14 14 C 1.52999 * 109.47259 * 179.97438 * 13 12 3 15 15 N 1.46495 * 109.47247 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99781 * 180.02562 * 15 14 13 17 17 O 1.21278 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99639 * 179.97438 * 16 15 14 19 19 H 1.08999 * 110.33001 * 57.25099 * 18 16 15 20 20 C 1.54470 * 110.37254 * 294.99743 * 18 16 15 21 21 C 1.54512 * 104.06165 * 217.19117 * 20 18 16 22 22 C 1.54474 * 104.06354 * 0.02562 * 21 20 18 23 23 O 1.44425 * 104.80421 * 23.97934 * 22 21 20 24 24 H 1.08998 * 109.46826 * 299.99653 * 1 2 3 25 25 H 1.08995 * 109.47761 * 59.99922 * 1 2 3 26 26 H 1.09004 * 109.47118 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46702 * 239.99806 * 2 1 3 28 28 H 1.09002 * 109.47518 * 120.00400 * 2 1 3 29 29 H 0.97002 * 119.99688 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47342 * 30.00341 * 12 3 2 31 31 H 1.09001 * 109.46701 * 149.99927 * 12 3 2 32 32 H 1.09000 * 109.47712 * 300.00661 * 13 12 3 33 33 H 1.09009 * 109.46665 * 60.00397 * 13 12 3 34 34 H 1.09000 * 109.47330 * 300.00933 * 14 13 12 35 35 H 1.09001 * 109.46626 * 60.00466 * 14 13 12 36 36 H 0.97004 * 120.00047 * 359.97438 * 15 14 13 37 37 H 1.09000 * 110.51307 * 335.83216 * 20 18 16 38 38 H 1.08999 * 110.51600 * 98.41179 * 20 18 16 39 39 H 1.09005 * 110.51502 * 118.64641 * 21 20 18 40 40 H 1.08997 * 110.51441 * 241.35583 * 21 20 18 41 41 H 1.09002 * 110.37265 * 142.80839 * 22 21 20 42 42 H 1.08995 * 110.37701 * 265.03378 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3140 2.0028 1.1837 5 1 2.1399 3.0628 1.2952 6 6 2.8432 1.2717 2.2384 7 7 3.4584 0.1317 2.0056 8 14 2.6820 1.9057 3.9881 9 1 1.2446 2.0451 4.3337 10 1 3.3258 0.9482 4.9228 11 1 3.3483 3.2284 4.0985 12 6 2.1902 2.0973 -1.2665 13 6 3.6076 1.8667 -1.7944 14 6 3.7870 2.6140 -3.1174 15 7 5.1440 2.3927 -3.6231 16 6 5.5311 2.9584 -4.7835 17 8 4.7561 3.6502 -5.4092 18 6 6.9273 2.7312 -5.3035 19 1 7.1178 1.6647 -5.4236 20 6 7.9659 3.3589 -4.3478 21 6 9.0548 3.9174 -5.2910 22 6 8.5448 3.5617 -6.7051 23 8 7.1149 3.4230 -6.5577 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8278 -0.3794 2.7426 30 1 1.4670 1.7282 -1.9937 31 1 2.0316 3.1636 -1.1053 32 1 4.3308 2.2358 -1.0672 33 1 3.7663 0.8003 -1.9555 34 1 3.0638 2.2445 -3.8444 35 1 3.6282 3.6804 -2.9566 36 1 5.7640 1.8397 -3.1225 37 1 7.5139 4.1634 -3.7676 38 1 8.3836 2.6001 -3.6860 39 1 9.1411 4.9981 -5.1772 40 1 10.0124 3.4343 -5.0973 41 1 8.7780 4.3638 -7.4055 42 1 8.9859 2.6240 -7.0429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316885357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:59 Heat of formation + Delta-G solvation = -73.834104 kcal Electronic energy + Delta-G solvation = -20792.592153 eV Core-core repulsion = 17579.949397 eV Total energy + Delta-G solvation = -3212.642756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30433 -38.46065 -36.39417 -34.85488 -32.54739 -31.91721 -31.04917 -29.87157 -28.45562 -25.44532 -23.96429 -23.05079 -21.79038 -21.45076 -20.46662 -19.64186 -17.54249 -16.78563 -16.65499 -16.10843 -15.35691 -15.04726 -15.00098 -14.62747 -14.12665 -13.89438 -13.82678 -13.39643 -13.19690 -12.47255 -12.27735 -12.09077 -11.97333 -11.71836 -11.57657 -11.46211 -11.07662 -11.05523 -10.95560 -10.71807 -10.66477 -10.27921 -10.21855 -9.93999 -9.77917 -9.57783 -9.56092 -8.90273 -8.49016 -6.63212 -5.80344 -3.33955 2.64366 2.94567 3.35676 3.41594 3.44542 3.88165 4.25265 4.46716 4.48836 4.59038 4.78796 4.86203 5.06941 5.27688 5.28679 5.31779 5.38365 5.49367 5.58143 5.64118 5.71390 5.82209 5.95649 6.18360 6.26570 6.31690 6.43184 6.49880 6.55583 6.62325 6.73222 6.87490 6.90859 7.09439 7.27660 7.60171 7.74593 7.80969 8.29129 8.49419 9.18193 9.81824 10.38272 11.19988 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025014 B = 0.003471 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.085865 B = 8065.185136 C = 8760.331645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 N -0.585 5.585 4 C -0.257 4.257 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.152 3.848 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.722 5.722 16 C 0.514 3.486 17 O -0.526 6.526 18 C 0.056 3.944 19 H 0.095 0.905 20 C -0.146 4.146 21 C -0.153 4.153 22 C 0.041 3.959 23 O -0.346 6.346 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.019 0.981 28 H 0.098 0.902 29 H 0.254 0.746 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.401 0.599 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.012 2.258 -12.036 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.305 5.305 4 C -0.387 4.387 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.025 3.975 13 C -0.186 4.186 14 C -0.003 4.003 15 N -0.375 5.375 16 C 0.298 3.702 17 O -0.402 6.402 18 C -0.005 4.005 19 H 0.112 0.888 20 C -0.184 4.184 21 C -0.191 4.191 22 C -0.036 4.036 23 O -0.263 6.263 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.335 2.726 -12.518 15.852 hybrid contribution 0.538 -0.150 1.326 1.439 sum 9.873 2.576 -11.192 15.145 Atomic orbital electron populations 1.22312 1.00942 0.98660 1.00407 1.20943 0.89792 0.86489 1.01644 1.43907 1.74011 1.11822 1.00744 1.19069 1.36045 0.94066 0.89474 0.92095 1.25083 0.97018 0.97933 0.99089 1.69975 1.36486 1.16131 1.30679 0.86459 0.77996 0.78106 0.84771 1.20955 1.21667 1.20798 1.20788 0.91801 0.96432 0.88521 1.22490 1.02803 0.99698 0.93652 1.21550 0.81600 1.00827 0.96342 1.46080 1.16161 1.52120 1.23093 1.20169 0.88506 0.80212 0.81299 1.90715 1.54219 1.37860 1.57401 1.22900 0.93604 0.98042 0.85960 0.88770 1.22932 0.95509 1.01737 0.98261 1.22941 0.98949 1.02474 0.94750 1.23491 0.81451 1.01418 0.97263 1.89289 1.22201 1.77944 1.36905 0.93282 0.94878 0.94755 0.96263 0.88430 0.93592 0.94517 0.93705 0.91087 0.92220 0.91980 0.91793 0.76470 0.89935 0.89323 0.90323 0.90087 0.88697 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 10.24 37.15 0.38 -2.93 16 2 C 0.14 3.18 5.98 -4.04 -0.02 3.16 16 3 N -0.58 -14.09 2.45 -173.24 -0.42 -14.52 16 4 C -0.26 -6.82 9.49 -15.06 -0.14 -6.96 16 5 H 0.06 1.62 7.92 -52.49 -0.42 1.20 16 6 C 0.01 0.23 4.94 -17.43 -0.09 0.14 16 7 N -0.89 -24.70 11.33 55.49 0.63 -24.07 16 8 Si 0.90 21.13 29.61 -169.99 -5.03 16.09 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.15 3.06 5.68 -4.04 -0.02 3.04 16 13 C -0.15 -2.60 5.65 -26.73 -0.15 -2.75 16 14 C 0.12 1.87 5.67 -4.04 -0.02 1.85 16 15 N -0.72 -9.85 5.54 -60.30 -0.33 -10.18 16 16 C 0.51 7.69 7.08 -10.98 -0.08 7.62 16 17 O -0.53 -10.27 16.55 -13.67 -0.23 -10.49 16 18 C 0.06 0.65 3.71 -27.11 -0.10 0.54 16 19 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 20 C -0.15 -1.30 6.61 -25.17 -0.17 -1.47 16 21 C -0.15 -1.13 7.09 -25.16 -0.18 -1.31 16 22 C 0.04 0.35 7.63 37.93 0.29 0.64 16 23 O -0.35 -4.62 10.91 -54.46 -0.59 -5.21 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 28 H 0.10 2.56 5.33 -51.93 -0.28 2.28 16 29 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.04 0.89 8.04 -51.93 -0.42 0.48 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.40 4.53 8.47 -40.82 -0.35 4.19 16 37 H 0.08 0.83 7.86 -51.93 -0.41 0.43 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -31.85 345.44 -8.42 -40.27 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.34 Total: 1.34 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.30 Total: 1.56 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.13 Total: -48.76 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.82 Total: -15.70 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.85 -8.42 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316885357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.565 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds