Wall clock time and date at job start Mon Mar 30 2020 00:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47224 * 2 1 4 4 C 1.36928 * 119.99956 * 93.46145 * 3 2 1 5 5 H 1.08000 * 120.00059 * 214.02366 * 4 3 2 6 6 C 1.38816 * 120.00295 * 34.30588 * 4 3 2 7 7 N 1.31623 * 119.99652 * 22.04660 * 6 4 3 8 8 Si 1.86801 * 120.00381 * 202.04626 * 6 4 3 9 9 H 1.48494 * 109.47030 * 59.99791 * 8 6 4 10 10 H 1.48492 * 109.47096 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46520 * 299.99868 * 8 6 4 12 12 C 1.46502 * 119.99656 * 273.46158 * 3 2 1 13 13 C 1.53001 * 109.47171 * 269.99453 * 12 3 2 14 14 C 1.52999 * 109.47259 * 179.97438 * 13 12 3 15 15 N 1.46495 * 109.47247 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99781 * 180.02562 * 15 14 13 17 17 O 1.21278 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99639 * 179.97438 * 16 15 14 19 19 H 1.08999 * 110.33001 * 57.25099 * 18 16 15 20 20 C 1.54470 * 110.37254 * 294.99743 * 18 16 15 21 21 C 1.54512 * 104.06165 * 217.19117 * 20 18 16 22 22 C 1.54474 * 104.06354 * 0.02562 * 21 20 18 23 23 O 1.44425 * 104.80421 * 23.97934 * 22 21 20 24 24 H 1.08998 * 109.46826 * 299.99653 * 1 2 3 25 25 H 1.08995 * 109.47761 * 59.99922 * 1 2 3 26 26 H 1.09004 * 109.47118 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46702 * 239.99806 * 2 1 3 28 28 H 1.09002 * 109.47518 * 120.00400 * 2 1 3 29 29 H 0.97002 * 119.99688 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47342 * 30.00341 * 12 3 2 31 31 H 1.09001 * 109.46701 * 149.99927 * 12 3 2 32 32 H 1.09000 * 109.47712 * 300.00661 * 13 12 3 33 33 H 1.09009 * 109.46665 * 60.00397 * 13 12 3 34 34 H 1.09000 * 109.47330 * 300.00933 * 14 13 12 35 35 H 1.09001 * 109.46626 * 60.00466 * 14 13 12 36 36 H 0.97004 * 120.00047 * 359.97438 * 15 14 13 37 37 H 1.09000 * 110.51307 * 335.83216 * 20 18 16 38 38 H 1.08999 * 110.51600 * 98.41179 * 20 18 16 39 39 H 1.09005 * 110.51502 * 118.64641 * 21 20 18 40 40 H 1.08997 * 110.51441 * 241.35583 * 21 20 18 41 41 H 1.09002 * 110.37265 * 142.80839 * 22 21 20 42 42 H 1.08995 * 110.37701 * 265.03378 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3140 2.0028 1.1837 5 1 2.1399 3.0628 1.2952 6 6 2.8432 1.2717 2.2384 7 7 3.4584 0.1317 2.0056 8 14 2.6820 1.9057 3.9881 9 1 1.2446 2.0451 4.3337 10 1 3.3258 0.9482 4.9228 11 1 3.3483 3.2284 4.0985 12 6 2.1902 2.0973 -1.2665 13 6 3.6076 1.8667 -1.7944 14 6 3.7870 2.6140 -3.1174 15 7 5.1440 2.3927 -3.6231 16 6 5.5311 2.9584 -4.7835 17 8 4.7561 3.6502 -5.4092 18 6 6.9273 2.7312 -5.3035 19 1 7.1178 1.6647 -5.4236 20 6 7.9659 3.3589 -4.3478 21 6 9.0548 3.9174 -5.2910 22 6 8.5448 3.5617 -6.7051 23 8 7.1149 3.4230 -6.5577 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8278 -0.3794 2.7426 30 1 1.4670 1.7282 -1.9937 31 1 2.0316 3.1636 -1.1053 32 1 4.3308 2.2358 -1.0672 33 1 3.7663 0.8003 -1.9555 34 1 3.0638 2.2445 -3.8444 35 1 3.6282 3.6804 -2.9566 36 1 5.7640 1.8397 -3.1225 37 1 7.5139 4.1634 -3.7676 38 1 8.3836 2.6001 -3.6860 39 1 9.1411 4.9981 -5.1772 40 1 10.0124 3.4343 -5.0973 41 1 8.7780 4.3638 -7.4055 42 1 8.9859 2.6240 -7.0429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316885357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:58 Heat of formation + Delta-G solvation = -94.082043 kcal Electronic energy + Delta-G solvation = -20793.470170 eV Core-core repulsion = 17579.949397 eV Total energy + Delta-G solvation = -3213.520773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31500 -39.48748 -38.11655 -36.28895 -33.88282 -33.17667 -32.59559 -31.00007 -29.94861 -27.02950 -25.35848 -24.36849 -22.96855 -22.48187 -21.82763 -21.14380 -18.58527 -18.56642 -17.65263 -17.20604 -16.73845 -16.52625 -16.06544 -16.04504 -15.61432 -15.33599 -14.94808 -14.64872 -14.34422 -14.17041 -13.99905 -13.25956 -13.18362 -12.88713 -12.75724 -12.73160 -12.67063 -12.44857 -12.34286 -12.26403 -12.05973 -11.82410 -11.70528 -11.48504 -11.36497 -11.07190 -10.69768 -10.47844 -10.15439 -8.58156 -7.80376 -5.37465 1.47888 1.49167 1.51029 1.56883 1.90000 2.53570 3.07107 3.26985 3.47027 3.65287 3.68414 3.90321 4.07098 4.13170 4.22016 4.28489 4.37150 4.49874 4.58543 4.66328 4.69117 4.80357 4.82212 4.89953 4.92395 4.96544 5.00003 5.00502 5.12162 5.17240 5.34148 5.36958 5.52347 5.53470 5.69861 5.73481 5.91046 6.48662 6.49404 7.14986 7.20014 7.90654 8.41232 9.16193 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025014 B = 0.003471 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.085865 B = 8065.185136 C = 8760.331645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 N -0.600 5.600 4 C -0.267 4.267 5 H 0.055 0.945 6 C -0.034 4.034 7 N -0.914 5.914 8 Si 0.953 3.047 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.277 1.277 12 C 0.147 3.853 13 C -0.123 4.123 14 C 0.132 3.868 15 N -0.711 5.711 16 C 0.510 3.490 17 O -0.579 6.579 18 C 0.058 3.942 19 H 0.123 0.877 20 C -0.144 4.144 21 C -0.148 4.148 22 C 0.033 3.967 23 O -0.386 6.386 24 H 0.031 0.969 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.251 0.749 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.415 0.585 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.073 1.934 -12.419 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.321 5.321 4 C -0.397 4.397 5 H 0.073 0.927 6 C -0.232 4.232 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.210 1.210 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.021 3.979 13 C -0.164 4.164 14 C 0.008 3.992 15 N -0.364 5.364 16 C 0.297 3.703 17 O -0.458 6.458 18 C -0.003 4.003 19 H 0.140 0.860 20 C -0.182 4.182 21 C -0.186 4.186 22 C -0.042 4.042 23 O -0.305 6.305 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.251 0.749 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.418 2.395 -12.899 16.753 hybrid contribution 0.197 -0.041 1.382 1.397 sum 10.616 2.354 -11.516 15.839 Atomic orbital electron populations 1.22149 0.98603 1.00173 1.00173 1.20891 0.91638 0.86009 1.00518 1.44088 1.74489 1.12165 1.01364 1.19255 1.35579 0.94019 0.90882 0.92725 1.25675 0.97162 0.98337 1.01987 1.70090 1.37434 1.17096 1.31180 0.85576 0.77678 0.77624 0.80977 1.20950 1.21819 1.20258 1.20899 0.93480 0.96030 0.87517 1.22133 1.00741 0.99451 0.94046 1.21254 0.82875 0.99946 0.95104 1.45933 1.15616 1.51901 1.22984 1.20896 0.89699 0.78960 0.80736 1.90685 1.56012 1.40216 1.58884 1.23029 0.91472 0.99657 0.86138 0.85962 1.22981 0.95167 1.01877 0.98221 1.22956 0.99520 1.02618 0.93457 1.23760 0.79305 1.02907 0.98277 1.89251 1.25165 1.78475 1.37649 0.94979 0.93508 0.92398 0.95464 0.91461 0.93979 0.92795 0.93860 0.93119 0.92635 0.91893 0.92499 0.74878 0.91694 0.86655 0.90560 0.87345 0.87973 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 10.24 71.98 0.74 -5.18 16 2 C 0.14 6.20 5.98 86.38 0.52 6.72 16 3 N -0.60 -28.78 2.45 -702.01 -1.72 -30.50 16 4 C -0.27 -14.21 9.49 84.04 0.80 -13.41 16 5 H 0.06 2.92 7.92 -2.91 -0.02 2.90 16 6 C -0.03 -1.84 4.94 84.86 0.42 -1.42 16 7 N -0.91 -51.08 11.33 21.65 0.25 -50.84 16 8 Si 0.95 43.49 29.61 68.60 2.03 45.52 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.15 5.83 5.68 86.38 0.49 6.32 16 13 C -0.12 -4.33 5.65 30.59 0.17 -4.16 16 14 C 0.13 4.05 5.67 86.38 0.49 4.54 16 15 N -0.71 -18.75 5.54 -463.07 -2.56 -21.32 16 16 C 0.51 15.02 7.08 87.66 0.62 15.64 16 17 O -0.58 -22.88 16.55 15.36 0.25 -22.63 16 18 C 0.06 1.23 3.71 30.35 0.11 1.35 16 19 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 20 C -0.14 -2.25 6.61 31.61 0.21 -2.04 16 21 C -0.15 -1.80 7.09 31.61 0.22 -1.58 16 22 C 0.03 0.50 7.63 72.48 0.55 1.05 16 23 O -0.39 -9.97 10.91 -130.59 -1.42 -11.39 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 28 H 0.07 3.56 5.33 -2.39 -0.01 3.54 16 29 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 30 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 31 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.41 8.73 8.47 -92.71 -0.79 7.94 16 37 H 0.06 1.24 7.86 -2.39 -0.02 1.22 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -69.25 345.44 2.36 -66.88 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.20 Total: 16.42 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.34 Total: 7.84 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -4.04 Total: -102.65 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.17 Total: -34.02 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -69.25 2.36 -66.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316885357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.198 kcal (2) G-P(sol) polarization free energy of solvation -69.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds