Wall clock time and date at job start Mon Mar 30 2020 01:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47068 * 2 1 4 4 C 1.42902 * 114.00130 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47340 * 180.02562 * 4 3 2 6 6 C 1.50701 * 115.54994 * 294.87347 * 5 4 3 7 7 O 1.21279 * 119.99984 * 114.36325 * 6 5 4 8 8 N 1.34781 * 120.00102 * 294.36506 * 6 5 4 9 9 C 1.46503 * 119.99826 * 174.78348 * 8 6 5 10 10 C 1.53001 * 109.46818 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47212 * 295.00539 * 10 9 8 12 12 C 1.52996 * 109.47212 * 175.00094 * 10 9 8 13 13 N 1.46503 * 109.47099 * 55.00203 * 10 9 8 14 14 C 1.36940 * 119.99956 * 205.00093 * 13 10 9 15 15 H 1.07998 * 119.99926 * 359.97438 * 14 13 10 16 16 C 1.38808 * 119.99892 * 180.02562 * 14 13 10 17 17 N 1.31626 * 120.00271 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46904 * 90.00143 * 18 16 14 20 20 H 1.48500 * 109.47509 * 209.99721 * 18 16 14 21 21 H 1.48496 * 109.47196 * 330.00100 * 18 16 14 22 22 C 1.53002 * 117.49995 * 80.54040 * 5 4 3 23 23 C 1.52999 * 117.50185 * 149.20685 * 5 4 3 24 24 H 1.09002 * 109.47374 * 299.99854 * 1 2 3 25 25 H 1.09004 * 109.47047 * 60.00213 * 1 2 3 26 26 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47022 * 239.99748 * 2 1 3 28 28 H 1.09004 * 109.47047 * 119.99787 * 2 1 3 29 29 H 1.09002 * 109.47015 * 59.99991 * 4 3 2 30 30 H 1.08999 * 109.47027 * 300.00427 * 4 3 2 31 31 H 0.97000 * 119.99707 * 355.06645 * 8 6 5 32 32 H 1.08996 * 109.46990 * 299.99994 * 9 8 6 33 33 H 1.08996 * 109.46655 * 60.00440 * 9 8 6 34 34 H 1.08995 * 109.47357 * 179.97438 * 12 10 9 35 35 H 1.09002 * 109.47395 * 300.00332 * 12 10 9 36 36 H 1.09006 * 109.47025 * 60.00068 * 12 10 9 37 37 H 0.96999 * 119.99948 * 24.99726 * 13 10 9 38 38 H 0.97000 * 120.00141 * 179.97438 * 17 16 14 39 39 H 1.08996 * 117.50041 * 215.00125 * 22 5 4 40 40 H 1.08991 * 117.50005 * 0.02787 * 22 5 4 41 41 H 1.09004 * 117.49379 * 359.96934 * 23 5 4 42 42 H 1.08992 * 117.49903 * 144.97581 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 3.4409 3.7142 -1.2323 7 8 2.6240 4.6074 -1.1567 8 7 4.0048 3.4153 -2.4194 9 6 3.5492 4.0902 -3.6373 10 6 4.3461 3.5717 -4.8361 11 1 5.3934 3.8526 -4.7252 12 6 3.7875 4.1829 -6.1227 13 7 4.2363 2.1123 -4.9011 14 6 5.2141 1.3789 -5.5185 15 1 6.0661 1.8764 -5.9579 16 6 5.1098 -0.0039 -5.5806 17 7 4.0713 -0.6103 -5.0455 18 14 6.4433 -1.0043 -6.4234 19 1 7.4846 -1.3758 -5.4319 20 1 5.8478 -2.2360 -7.0008 21 1 7.0577 -0.1964 -7.5073 22 6 3.7915 3.6781 1.3401 23 6 5.1336 3.3202 0.6965 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9766 0.8908 31 1 4.7094 2.7504 -2.4679 32 1 2.4894 3.8869 -3.7906 33 1 3.7023 5.1646 -3.5361 34 1 4.3555 3.8139 -6.9766 35 1 2.7402 3.9020 -6.2336 36 1 3.8693 5.2689 -6.0743 37 1 3.4710 1.6654 -4.5067 38 1 3.9982 -1.5765 -5.0892 39 1 3.4912 4.7258 1.3288 40 1 3.4887 3.1115 2.2205 41 1 5.7130 2.5182 1.1541 42 1 5.7163 4.1322 0.2617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317251162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:52 Heat of formation + Delta-G solvation = -56.955723 kcal Electronic energy + Delta-G solvation = -21545.822259 eV Core-core repulsion = 18333.911404 eV Total energy + Delta-G solvation = -3211.910855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.87939 -37.83322 -36.59473 -35.82661 -33.45734 -31.80411 -31.18885 -28.76522 -27.19704 -25.84581 -23.75030 -22.78321 -22.40294 -22.28392 -20.14873 -19.04239 -17.43547 -16.97970 -16.27350 -15.86356 -15.54131 -15.30375 -15.02022 -14.25626 -14.17319 -13.62076 -13.37499 -13.20210 -12.99762 -12.47275 -12.20960 -12.10569 -12.01720 -11.84757 -11.57264 -11.42827 -11.33032 -11.07839 -10.90099 -10.77818 -10.56007 -10.36828 -10.18771 -10.00224 -9.73397 -9.50309 -9.30185 -8.99989 -8.53938 -7.05497 -5.83412 -3.13372 2.94111 3.37251 3.38207 3.43989 3.45059 3.62567 4.05625 4.52445 4.69122 4.89378 4.92960 5.13115 5.17483 5.31863 5.45294 5.48138 5.49968 5.54445 5.56480 5.58996 5.75499 5.78255 5.85946 5.89020 5.96474 6.05500 6.10022 6.12013 6.19805 6.22104 6.35881 6.57303 6.76180 6.89636 7.07086 7.34359 7.63927 8.03837 8.33957 8.67455 9.45955 10.01403 10.37478 11.38327 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.005913 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.053080 B = 4733.822191 C = 5613.903249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.105 3.895 5 C -0.155 4.155 6 C 0.554 3.446 7 O -0.548 6.548 8 N -0.708 5.708 9 C 0.116 3.884 10 C 0.159 3.841 11 H 0.053 0.947 12 C -0.162 4.162 13 N -0.723 5.723 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.929 5.929 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.138 4.138 23 C -0.153 4.153 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.410 0.590 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 4.372 11.397 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.300 6.300 4 C 0.028 3.972 5 C -0.159 4.159 6 C 0.339 3.661 7 O -0.425 6.425 8 N -0.359 5.359 9 C -0.009 4.009 10 C 0.049 3.951 11 H 0.071 0.929 12 C -0.223 4.223 13 N -0.366 5.366 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.175 4.175 23 C -0.190 4.190 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.875 5.085 11.325 12.445 hybrid contribution 0.899 -1.480 -0.567 1.822 sum 0.023 3.605 10.758 11.346 Atomic orbital electron populations 1.21710 0.93899 1.01969 1.03009 1.22467 0.95559 0.83739 1.00276 1.87934 1.20283 1.26360 1.95422 1.21827 0.82242 0.91909 1.01183 1.21331 1.04443 0.95944 0.94149 1.19230 0.80662 0.82678 0.83521 1.90639 1.34115 1.31757 1.86038 1.45893 1.40263 1.43470 1.06294 1.21679 0.99153 0.96018 0.84018 1.20510 0.97047 0.86317 0.91196 0.92904 1.22356 1.01452 0.98360 1.00099 1.42475 1.26567 0.99184 1.68344 1.19227 1.00233 0.88813 1.28922 0.91148 1.24728 0.97972 0.96570 1.01425 1.69673 1.29597 1.08587 1.49894 0.86227 0.81094 0.79918 0.79135 1.21780 1.21843 1.20803 1.22931 0.98866 1.01665 0.94062 1.23094 0.89983 1.03585 1.02336 0.92236 0.91676 0.91261 0.92551 0.93857 0.91489 0.92751 0.75425 0.91966 0.91898 0.92353 0.93212 0.94204 0.78059 0.93549 0.87824 0.88029 0.87742 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 37.16 0.38 -1.44 16 2 C 0.06 0.78 6.66 37.16 0.25 1.03 16 3 O -0.38 -6.30 10.27 -35.23 -0.36 -6.66 16 4 C 0.11 1.54 5.76 37.16 0.21 1.76 16 5 C -0.16 -2.28 2.16 -155.66 -0.34 -2.62 16 6 C 0.55 10.00 7.01 -10.98 -0.08 9.92 16 7 O -0.55 -11.58 16.71 5.56 0.09 -11.49 16 8 N -0.71 -12.50 5.39 -60.29 -0.32 -12.83 16 9 C 0.12 2.07 5.24 -4.04 -0.02 2.05 16 10 C 0.16 3.03 3.05 -67.93 -0.21 2.83 16 11 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 12 C -0.16 -2.85 9.49 37.16 0.35 -2.50 16 13 N -0.72 -16.96 4.56 -53.42 -0.24 -17.21 16 14 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 15 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 18 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C -0.14 -1.71 9.78 -26.69 -0.26 -1.97 16 23 C -0.15 -1.71 9.93 -26.69 -0.26 -1.98 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.41 7.27 8.14 -40.82 -0.33 6.93 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.39 9.87 7.80 -40.82 -0.32 9.55 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.10 1.36 8.00 -51.93 -0.42 0.95 16 40 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -30.82 355.88 -7.36 -38.18 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -7.37 Total: 13.85 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.22 Total: 0.26 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.16 Total: -55.99 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.27 Total: -18.15 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.82 -7.36 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317251162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.771 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds