Wall clock time and date at job start Mon Mar 30 2020 01:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47068 * 2 1 4 4 C 1.42902 * 114.00130 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47340 * 180.02562 * 4 3 2 6 6 C 1.50701 * 115.54994 * 294.87347 * 5 4 3 7 7 O 1.21279 * 119.99984 * 114.36325 * 6 5 4 8 8 N 1.34781 * 120.00102 * 294.36506 * 6 5 4 9 9 C 1.46503 * 119.99826 * 174.78348 * 8 6 5 10 10 C 1.53001 * 109.46818 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47212 * 295.00539 * 10 9 8 12 12 C 1.52996 * 109.47212 * 175.00094 * 10 9 8 13 13 N 1.46503 * 109.47099 * 55.00203 * 10 9 8 14 14 C 1.36940 * 119.99956 * 205.00093 * 13 10 9 15 15 H 1.07998 * 119.99926 * 359.97438 * 14 13 10 16 16 C 1.38808 * 119.99892 * 180.02562 * 14 13 10 17 17 N 1.31626 * 120.00271 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46904 * 90.00143 * 18 16 14 20 20 H 1.48500 * 109.47509 * 209.99721 * 18 16 14 21 21 H 1.48496 * 109.47196 * 330.00100 * 18 16 14 22 22 C 1.53002 * 117.49995 * 80.54040 * 5 4 3 23 23 C 1.52999 * 117.50185 * 149.20685 * 5 4 3 24 24 H 1.09002 * 109.47374 * 299.99854 * 1 2 3 25 25 H 1.09004 * 109.47047 * 60.00213 * 1 2 3 26 26 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47022 * 239.99748 * 2 1 3 28 28 H 1.09004 * 109.47047 * 119.99787 * 2 1 3 29 29 H 1.09002 * 109.47015 * 59.99991 * 4 3 2 30 30 H 1.08999 * 109.47027 * 300.00427 * 4 3 2 31 31 H 0.97000 * 119.99707 * 355.06645 * 8 6 5 32 32 H 1.08996 * 109.46990 * 299.99994 * 9 8 6 33 33 H 1.08996 * 109.46655 * 60.00440 * 9 8 6 34 34 H 1.08995 * 109.47357 * 179.97438 * 12 10 9 35 35 H 1.09002 * 109.47395 * 300.00332 * 12 10 9 36 36 H 1.09006 * 109.47025 * 60.00068 * 12 10 9 37 37 H 0.96999 * 119.99948 * 24.99726 * 13 10 9 38 38 H 0.97000 * 120.00141 * 179.97438 * 17 16 14 39 39 H 1.08996 * 117.50041 * 215.00125 * 22 5 4 40 40 H 1.08991 * 117.50005 * 0.02787 * 22 5 4 41 41 H 1.09004 * 117.49379 * 359.96934 * 23 5 4 42 42 H 1.08992 * 117.49903 * 144.97581 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 3.4409 3.7142 -1.2323 7 8 2.6240 4.6074 -1.1567 8 7 4.0048 3.4153 -2.4194 9 6 3.5492 4.0902 -3.6373 10 6 4.3461 3.5717 -4.8361 11 1 5.3934 3.8526 -4.7252 12 6 3.7875 4.1829 -6.1227 13 7 4.2363 2.1123 -4.9011 14 6 5.2141 1.3789 -5.5185 15 1 6.0661 1.8764 -5.9579 16 6 5.1098 -0.0039 -5.5806 17 7 4.0713 -0.6103 -5.0455 18 14 6.4433 -1.0043 -6.4234 19 1 7.4846 -1.3758 -5.4319 20 1 5.8478 -2.2360 -7.0008 21 1 7.0577 -0.1964 -7.5073 22 6 3.7915 3.6781 1.3401 23 6 5.1336 3.3202 0.6965 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9766 0.8908 31 1 4.7094 2.7504 -2.4679 32 1 2.4894 3.8869 -3.7906 33 1 3.7023 5.1646 -3.5361 34 1 4.3555 3.8139 -6.9766 35 1 2.7402 3.9020 -6.2336 36 1 3.8693 5.2689 -6.0743 37 1 3.4710 1.6654 -4.5067 38 1 3.9982 -1.5765 -5.0892 39 1 3.4912 4.7258 1.3288 40 1 3.4887 3.1115 2.2205 41 1 5.7130 2.5182 1.1541 42 1 5.7163 4.1322 0.2617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317251162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:52 Heat of formation + Delta-G solvation = -77.969163 kcal Electronic energy + Delta-G solvation = -21546.733470 eV Core-core repulsion = 18333.911404 eV Total energy + Delta-G solvation = -3212.822066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18763 -39.08252 -38.03841 -37.14066 -35.17078 -33.57429 -32.23710 -30.59309 -28.38070 -27.21559 -25.69352 -23.89193 -23.62765 -23.26474 -21.73576 -20.40805 -19.29320 -18.26766 -17.46978 -17.13914 -17.01934 -16.67484 -16.47944 -15.82852 -15.62810 -15.09517 -14.91542 -14.45448 -14.26271 -13.84353 -13.68376 -13.53154 -13.34711 -13.09699 -13.05278 -12.77399 -12.52902 -12.47230 -12.41293 -12.17928 -12.16437 -11.73181 -11.66905 -11.60036 -11.21334 -10.98029 -10.80217 -10.52420 -10.02158 -9.01932 -7.90104 -5.19573 1.49905 1.51160 1.57838 1.58863 2.21812 2.40457 2.58181 3.02228 3.43403 3.63433 3.74213 3.86292 3.91233 3.97478 4.06583 4.13771 4.29043 4.37513 4.44170 4.48163 4.59252 4.62569 4.70905 4.71334 4.77728 4.82867 4.90024 4.96421 5.01327 5.05041 5.19076 5.21998 5.24037 5.41159 5.56880 5.59411 6.23373 6.29518 6.60373 7.25146 7.37004 8.08388 8.34013 9.32247 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.005913 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.053080 B = 4733.822191 C = 5613.903249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.408 6.408 4 C 0.108 3.892 5 C -0.184 4.184 6 C 0.549 3.451 7 O -0.586 6.586 8 N -0.707 5.707 9 C 0.123 3.877 10 C 0.160 3.840 11 H 0.062 0.938 12 C -0.155 4.155 13 N -0.731 5.731 14 C -0.235 4.235 15 H 0.078 0.922 16 C -0.069 4.069 17 N -0.964 5.964 18 Si 0.967 3.033 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.273 1.273 22 C -0.132 4.132 23 C -0.125 4.125 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.409 0.591 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.371 0.629 38 H 0.248 0.752 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 4.699 12.422 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.328 6.328 4 C 0.031 3.969 5 C -0.188 4.188 6 C 0.336 3.664 7 O -0.466 6.466 8 N -0.357 5.357 9 C -0.001 4.001 10 C 0.052 3.948 11 H 0.080 0.920 12 C -0.215 4.215 13 N -0.372 5.372 14 C -0.366 4.366 15 H 0.096 0.904 16 C -0.262 4.262 17 N -0.615 5.615 18 Si 0.797 3.203 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.198 1.198 22 C -0.169 4.169 23 C -0.162 4.162 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.246 0.754 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.203 0.797 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.621 5.453 12.337 13.503 hybrid contribution 0.426 -1.494 -0.887 1.788 sum 1.047 3.960 11.450 12.160 Atomic orbital electron populations 1.21734 0.92951 1.03312 1.02341 1.22620 0.96452 0.82875 1.00564 1.87910 1.21513 1.27845 1.95550 1.21882 0.81470 0.91974 1.01575 1.21349 1.08101 0.95745 0.93561 1.19865 0.79776 0.82279 0.84436 1.90607 1.35691 1.33626 1.86702 1.45915 1.40125 1.43235 1.06378 1.21569 0.97838 0.96885 0.83829 1.20669 0.97804 0.83965 0.92374 0.92032 1.22234 1.00443 1.00405 0.98411 1.42594 1.25566 1.00963 1.68053 1.19566 1.00417 0.89119 1.27526 0.90414 1.25437 1.00025 0.97768 1.02936 1.69829 1.31554 1.08232 1.51887 0.85244 0.78732 0.78053 0.78304 1.21339 1.22935 1.19790 1.23019 0.99659 1.00967 0.93300 1.23266 0.88992 1.03976 0.99922 0.91381 0.93780 0.88945 0.94563 0.91141 0.93796 0.89463 0.75448 0.93788 0.90206 0.93467 0.94104 0.90822 0.79667 0.94286 0.88986 0.85996 0.84861 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 10.28 71.98 0.74 -2.80 16 2 C 0.05 1.40 6.66 71.98 0.48 1.88 16 3 O -0.41 -13.50 10.27 -148.98 -1.53 -15.03 16 4 C 0.11 3.07 5.76 71.98 0.41 3.49 16 5 C -0.18 -5.22 2.16 -52.93 -0.11 -5.34 16 6 C 0.55 19.89 7.01 87.66 0.61 20.51 16 7 O -0.59 -25.11 16.71 -3.03 -0.05 -25.16 16 8 N -0.71 -25.03 5.39 -463.05 -2.49 -27.52 16 9 C 0.12 4.38 5.24 86.38 0.45 4.83 16 10 C 0.16 5.98 3.05 44.99 0.14 6.12 16 11 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 12 C -0.15 -5.24 9.49 71.98 0.68 -4.56 16 13 N -0.73 -34.43 4.56 -322.94 -1.47 -35.91 16 14 C -0.23 -12.13 9.93 84.03 0.83 -11.30 16 15 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 16 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 17 N -0.96 -56.42 13.06 21.65 0.28 -56.13 16 18 Si 0.97 44.20 29.55 68.60 2.03 46.23 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C -0.13 -3.01 9.78 30.62 0.30 -2.71 16 23 C -0.12 -2.45 9.93 30.62 0.30 -2.15 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 31 H 0.41 14.57 8.14 -92.71 -0.75 13.82 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.37 19.51 7.80 -92.71 -0.72 18.79 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.09 2.32 8.00 -2.39 -0.02 2.30 16 40 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -67.02 355.88 1.59 -65.43 By element: Atomic # 1 Polarization: 43.89 SS G_CDS: -0.48 Total: 43.41 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.31 Total: 4.68 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -3.68 Total: -119.56 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.58 Total: -40.18 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -67.02 1.59 -65.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317251162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.539 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds