Wall clock time and date at job start Mon Mar 30 2020 01:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00307 * 2 1 4 4 C 1.53003 * 112.84975 * 294.61425 * 3 2 1 5 5 C 1.50699 * 109.47206 * 291.43630 * 4 3 2 6 6 O 1.21287 * 119.99586 * 356.57614 * 5 4 3 7 7 N 1.34773 * 120.00347 * 176.57634 * 5 4 3 8 8 C 1.46501 * 120.00124 * 359.97438 * 7 5 4 9 9 C 1.46500 * 120.00281 * 180.02562 * 7 5 4 10 10 C 1.53000 * 109.47238 * 89.99429 * 9 7 5 11 11 N 1.46508 * 109.47063 * 180.02562 * 10 9 7 12 12 C 1.36937 * 119.99861 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99833 * 359.97438 * 12 11 10 14 14 C 1.38813 * 119.99742 * 180.02562 * 12 11 10 15 15 N 1.31614 * 119.99978 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99754 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47450 * 119.99601 * 16 14 12 19 19 H 1.48511 * 109.46807 * 239.99527 * 16 14 12 20 20 C 1.53781 * 113.69258 * 65.87750 * 3 2 1 21 21 C 1.53780 * 87.07910 * 89.12789 * 20 3 2 22 22 C 1.53773 * 113.62067 * 163.41650 * 3 2 1 23 23 H 1.09000 * 109.47178 * 176.15414 * 1 2 3 24 24 H 1.09000 * 109.47146 * 296.14830 * 1 2 3 25 25 H 1.08997 * 109.47630 * 56.15253 * 1 2 3 26 26 H 1.08993 * 109.47335 * 171.43129 * 4 3 2 27 27 H 1.09007 * 109.47253 * 51.43084 * 4 3 2 28 28 H 1.08996 * 109.47013 * 89.99598 * 8 7 5 29 29 H 1.08996 * 109.47273 * 210.00664 * 8 7 5 30 30 H 1.09001 * 109.46675 * 329.99928 * 8 7 5 31 31 H 1.08999 * 109.47469 * 209.99802 * 9 7 5 32 32 H 1.09006 * 109.47178 * 329.99757 * 9 7 5 33 33 H 1.08998 * 109.47132 * 299.99992 * 10 9 7 34 34 H 1.08998 * 109.46831 * 60.00392 * 10 9 7 35 35 H 0.96996 * 119.99582 * 0.02562 * 11 10 9 36 36 H 0.97007 * 120.00170 * 180.02562 * 15 14 12 37 37 H 1.08997 * 113.61706 * 203.68125 * 20 3 2 38 38 H 1.09005 * 113.60857 * 334.58322 * 20 3 2 39 39 H 1.09000 * 113.61647 * 270.88355 * 21 20 3 40 40 H 1.09007 * 113.61204 * 139.98138 * 21 20 3 41 41 H 1.09002 * 113.61062 * 25.34469 * 22 3 2 42 42 H 1.08992 * 113.62047 * 156.25074 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7154 2.0870 -1.2818 5 6 2.4457 1.4516 -2.4369 6 8 3.1829 0.5083 -2.2429 7 7 2.2795 1.9315 -3.6852 8 6 1.3885 3.0706 -3.9196 9 6 2.9889 1.3134 -4.8081 10 6 2.1304 0.1935 -5.3995 11 7 2.8402 -0.4250 -6.5221 12 6 2.2627 -1.4573 -7.2120 13 1 1.2843 -1.8158 -6.9283 14 6 2.9354 -2.0437 -8.2752 15 7 4.1280 -1.6070 -8.6206 16 14 2.1474 -3.4514 -9.2168 17 1 0.8145 -3.7512 -8.6350 18 1 1.9906 -3.0670 -10.6425 19 1 3.0111 -4.6558 -9.1209 20 6 1.7359 2.1040 1.2852 21 6 3.0180 1.4752 1.8559 22 6 3.4944 1.3190 0.4021 23 1 -0.3633 -1.0253 -0.0689 24 1 -0.3633 0.4529 0.9225 25 1 -0.3634 0.5724 -0.8534 26 1 2.0493 3.1178 -1.1638 27 1 0.6432 2.0726 -1.4778 28 1 1.9545 3.9981 -3.8344 29 1 0.9597 2.9969 -4.9190 30 1 0.5882 3.0640 -3.1796 31 1 3.1831 2.0650 -5.5733 32 1 3.9343 0.8996 -4.4571 33 1 1.9363 -0.5581 -4.6344 34 1 1.1851 0.6073 -5.7506 35 1 3.7191 -0.1031 -6.7766 36 1 4.5980 -2.0165 -9.3639 37 1 1.8014 3.1837 1.1508 38 1 0.8292 1.7955 1.8057 39 1 2.8497 0.5260 2.3647 40 1 3.6216 2.1691 2.4410 41 1 4.0075 0.3767 0.2098 42 1 4.0408 2.1839 0.0263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317581015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:10 Heat of formation + Delta-G solvation = -37.971668 kcal Electronic energy + Delta-G solvation = -21439.822350 eV Core-core repulsion = 18228.734706 eV Total energy + Delta-G solvation = -3211.087644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59551 -38.93554 -35.77944 -35.63018 -34.29331 -31.64453 -30.39473 -28.03701 -27.19689 -26.30355 -25.59146 -24.04406 -22.83166 -21.36032 -19.64897 -18.97997 -17.16952 -16.89750 -16.54324 -16.17887 -15.44683 -15.23347 -15.08099 -14.44546 -14.26777 -13.97413 -13.60549 -13.34827 -13.19317 -12.97549 -12.80137 -12.51110 -12.30131 -12.19621 -11.77212 -11.44791 -11.19335 -11.13555 -10.95768 -10.94115 -10.84489 -10.63963 -10.24967 -10.03929 -9.73542 -9.62340 -9.34431 -8.83472 -8.41134 -6.88504 -5.72170 -3.01045 2.86031 3.13597 3.46938 3.52393 3.54903 3.60715 4.22374 4.43325 4.55061 4.65100 4.71011 4.81020 5.00011 5.12695 5.16508 5.18267 5.27894 5.36364 5.40992 5.50884 5.53750 5.57497 5.63254 5.65170 5.71376 5.72364 5.90369 6.05549 6.09496 6.14277 6.16582 6.19114 6.63067 6.80427 6.98780 7.20449 7.59421 7.74844 8.43119 8.47094 9.57364 10.14061 10.49330 11.50940 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003754 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.169647 B = 7457.497124 C = 7740.563006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.109 3.891 4 C -0.157 4.157 5 C 0.510 3.490 6 O -0.514 6.514 7 N -0.617 5.617 8 C 0.079 3.921 9 C 0.109 3.891 10 C 0.143 3.857 11 N -0.731 5.731 12 C -0.236 4.236 13 H 0.070 0.930 14 C -0.015 4.015 15 N -0.934 5.934 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.165 4.165 21 C -0.138 4.138 22 C -0.112 4.112 23 H 0.087 0.913 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.023 0.977 34 H 0.016 0.984 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 13.598 19.915 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.264 6.264 3 C 0.068 3.932 4 C -0.197 4.197 5 C 0.297 3.703 6 O -0.389 6.389 7 N -0.352 5.352 8 C -0.065 4.065 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.375 5.375 12 C -0.367 4.367 13 H 0.088 0.912 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.739 3.261 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.218 1.218 20 C -0.202 4.202 21 C -0.176 4.176 22 C -0.149 4.149 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.752 12.788 19.968 24.655 hybrid contribution -0.558 -0.332 -0.855 1.074 sum -7.310 12.456 19.113 23.956 Atomic orbital electron populations 1.22764 0.81820 1.02890 0.99611 1.88064 1.18904 1.24961 1.94453 1.22227 0.96190 0.83765 0.90992 1.22228 1.01950 1.01018 0.94524 1.20391 0.82611 0.83849 0.83408 1.90754 1.37407 1.26775 1.83929 1.47855 1.46753 1.33188 1.07383 1.21780 0.93474 0.88334 1.02913 1.21669 0.96520 0.96077 0.87109 1.20902 0.94124 0.93006 0.90493 1.42225 1.20605 1.40221 1.34482 1.19260 1.00405 1.08292 1.08786 0.91185 1.24744 0.96795 1.00144 0.99372 1.69673 1.13471 1.44305 1.30804 0.86093 0.78301 0.82081 0.79595 1.20568 1.21867 1.21800 1.23580 0.99234 1.00074 0.97342 1.22813 0.96728 1.01082 0.96938 1.22858 0.93934 1.03660 0.94442 0.89492 0.94145 0.94112 0.88102 0.88970 0.92777 0.90636 0.91553 0.90690 0.89750 0.95913 0.96632 0.78287 0.93563 0.89311 0.90999 0.89855 0.91402 0.89580 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.63 101.05 1.07 1.34 16 2 O -0.35 -4.83 10.25 -38.23 -0.39 -5.22 16 3 C 0.11 1.25 0.39 -89.81 -0.03 1.21 16 4 C -0.16 -1.67 3.78 -27.88 -0.11 -1.78 16 5 C 0.51 7.84 7.46 -10.99 -0.08 7.75 16 6 O -0.51 -10.20 14.30 2.56 0.04 -10.16 16 7 N -0.62 -8.98 2.87 -181.57 -0.52 -9.50 16 8 C 0.08 0.77 10.27 59.85 0.61 1.39 16 9 C 0.11 1.95 5.52 -4.04 -0.02 1.93 16 10 C 0.14 3.17 6.58 -4.04 -0.03 3.14 16 11 N -0.73 -19.71 5.60 -59.91 -0.34 -20.04 16 12 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 13 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 14 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 15 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 16 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 C -0.16 -1.38 7.21 -25.92 -0.19 -1.56 16 21 C -0.14 -1.27 8.02 -25.92 -0.21 -1.48 16 22 C -0.11 -1.31 6.11 -25.92 -0.16 -1.46 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.33 6.84 -51.93 -0.36 -0.03 16 25 H 0.04 0.39 6.52 -51.93 -0.34 0.06 16 26 H 0.10 0.80 8.00 -51.93 -0.42 0.38 16 27 H 0.09 0.84 5.64 -51.93 -0.29 0.55 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.07 0.50 6.35 -51.93 -0.33 0.18 16 31 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.08 1.69 7.42 -51.93 -0.39 1.30 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 10.70 7.67 -40.82 -0.31 10.39 16 36 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.09 0.58 8.00 -51.93 -0.42 0.17 16 38 H 0.07 0.56 6.81 -51.93 -0.35 0.21 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.09 1.24 7.99 -51.93 -0.42 0.82 16 42 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -35.51 338.88 -6.74 -42.25 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.95 Total: 5.01 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 0.62 Total: 2.83 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.13 Total: -57.93 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.36 Total: -15.38 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.51 -6.74 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317581015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.281 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds