Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00307 * 2 1 4 4 C 1.53003 * 112.84975 * 294.61425 * 3 2 1 5 5 C 1.50699 * 109.47206 * 291.43630 * 4 3 2 6 6 O 1.21287 * 119.99586 * 356.57614 * 5 4 3 7 7 N 1.34773 * 120.00347 * 176.57634 * 5 4 3 8 8 C 1.46501 * 120.00124 * 359.97438 * 7 5 4 9 9 C 1.46500 * 120.00281 * 180.02562 * 7 5 4 10 10 C 1.53000 * 109.47238 * 89.99429 * 9 7 5 11 11 N 1.46508 * 109.47063 * 180.02562 * 10 9 7 12 12 C 1.36937 * 119.99861 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99833 * 359.97438 * 12 11 10 14 14 C 1.38813 * 119.99742 * 180.02562 * 12 11 10 15 15 N 1.31614 * 119.99978 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99754 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47450 * 119.99601 * 16 14 12 19 19 H 1.48511 * 109.46807 * 239.99527 * 16 14 12 20 20 C 1.53781 * 113.69258 * 65.87750 * 3 2 1 21 21 C 1.53780 * 87.07910 * 89.12789 * 20 3 2 22 22 C 1.53773 * 113.62067 * 163.41650 * 3 2 1 23 23 H 1.09000 * 109.47178 * 176.15414 * 1 2 3 24 24 H 1.09000 * 109.47146 * 296.14830 * 1 2 3 25 25 H 1.08997 * 109.47630 * 56.15253 * 1 2 3 26 26 H 1.08993 * 109.47335 * 171.43129 * 4 3 2 27 27 H 1.09007 * 109.47253 * 51.43084 * 4 3 2 28 28 H 1.08996 * 109.47013 * 89.99598 * 8 7 5 29 29 H 1.08996 * 109.47273 * 210.00664 * 8 7 5 30 30 H 1.09001 * 109.46675 * 329.99928 * 8 7 5 31 31 H 1.08999 * 109.47469 * 209.99802 * 9 7 5 32 32 H 1.09006 * 109.47178 * 329.99757 * 9 7 5 33 33 H 1.08998 * 109.47132 * 299.99992 * 10 9 7 34 34 H 1.08998 * 109.46831 * 60.00392 * 10 9 7 35 35 H 0.96996 * 119.99582 * 0.02562 * 11 10 9 36 36 H 0.97007 * 120.00170 * 180.02562 * 15 14 12 37 37 H 1.08997 * 113.61706 * 203.68125 * 20 3 2 38 38 H 1.09005 * 113.60857 * 334.58322 * 20 3 2 39 39 H 1.09000 * 113.61647 * 270.88355 * 21 20 3 40 40 H 1.09007 * 113.61204 * 139.98138 * 21 20 3 41 41 H 1.09002 * 113.61062 * 25.34469 * 22 3 2 42 42 H 1.08992 * 113.62047 * 156.25074 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7154 2.0870 -1.2818 5 6 2.4457 1.4516 -2.4369 6 8 3.1829 0.5083 -2.2429 7 7 2.2795 1.9315 -3.6852 8 6 1.3885 3.0706 -3.9196 9 6 2.9889 1.3134 -4.8081 10 6 2.1304 0.1935 -5.3995 11 7 2.8402 -0.4250 -6.5221 12 6 2.2627 -1.4573 -7.2120 13 1 1.2843 -1.8158 -6.9283 14 6 2.9354 -2.0437 -8.2752 15 7 4.1280 -1.6070 -8.6206 16 14 2.1474 -3.4514 -9.2168 17 1 0.8145 -3.7512 -8.6350 18 1 1.9906 -3.0670 -10.6425 19 1 3.0111 -4.6558 -9.1209 20 6 1.7359 2.1040 1.2852 21 6 3.0180 1.4752 1.8559 22 6 3.4944 1.3190 0.4021 23 1 -0.3633 -1.0253 -0.0689 24 1 -0.3633 0.4529 0.9225 25 1 -0.3634 0.5724 -0.8534 26 1 2.0493 3.1178 -1.1638 27 1 0.6432 2.0726 -1.4778 28 1 1.9545 3.9981 -3.8344 29 1 0.9597 2.9969 -4.9190 30 1 0.5882 3.0640 -3.1796 31 1 3.1831 2.0650 -5.5733 32 1 3.9343 0.8996 -4.4571 33 1 1.9363 -0.5581 -4.6344 34 1 1.1851 0.6073 -5.7506 35 1 3.7191 -0.1031 -6.7766 36 1 4.5980 -2.0165 -9.3639 37 1 1.8014 3.1837 1.1508 38 1 0.8292 1.7955 1.8057 39 1 2.8497 0.5260 2.3647 40 1 3.6216 2.1691 2.4410 41 1 4.0075 0.3767 0.2098 42 1 4.0408 2.1839 0.0263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317581015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -63.461458 kcal Electronic energy + Delta-G solvation = -21440.927671 eV Core-core repulsion = 18228.734706 eV Total energy + Delta-G solvation = -3212.192964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.55400 -40.01065 -37.31060 -36.50035 -36.04493 -33.52963 -31.65486 -29.54118 -27.97566 -27.41910 -26.39286 -25.76450 -24.11997 -22.97483 -20.53025 -20.10987 -19.20193 -18.03431 -17.55825 -17.23034 -16.73390 -16.34922 -16.18087 -15.98905 -15.34137 -15.30252 -15.04937 -14.95437 -14.62751 -14.19015 -13.95757 -13.24572 -13.23224 -13.13735 -13.06073 -12.90794 -12.74509 -12.50903 -12.35383 -12.26051 -12.11508 -11.91120 -11.88571 -11.66827 -11.09916 -11.02022 -10.70171 -10.28683 -9.64278 -9.10020 -8.00642 -5.31857 1.43967 1.46510 1.56472 1.71423 2.01309 2.53647 2.81199 3.32471 3.39977 3.68377 3.71030 3.88375 3.96716 4.05057 4.20795 4.23089 4.27558 4.39258 4.42150 4.48707 4.53956 4.57044 4.63006 4.75658 4.80617 4.84883 4.90629 4.95906 5.00184 5.07288 5.07536 5.21167 5.28844 5.40212 5.42988 5.56309 6.20970 6.41108 6.48184 7.26698 7.29068 7.98070 8.24091 9.23002 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003754 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.169647 B = 7457.497124 C = 7740.563006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.387 6.387 3 C 0.094 3.906 4 C -0.146 4.146 5 C 0.500 3.500 6 O -0.572 6.572 7 N -0.617 5.617 8 C 0.070 3.930 9 C 0.123 3.877 10 C 0.151 3.849 11 N -0.743 5.743 12 C -0.253 4.253 13 H 0.072 0.928 14 C -0.073 4.073 15 N -0.968 5.968 16 Si 0.979 3.021 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.292 1.292 20 C -0.143 4.143 21 C -0.133 4.133 22 C -0.124 4.124 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.139 0.861 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.055 0.945 33 H -0.006 1.006 34 H 0.029 0.971 35 H 0.375 0.625 36 H 0.254 0.746 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.300 15.780 20.812 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.306 6.306 3 C 0.054 3.946 4 C -0.186 4.186 5 C 0.290 3.710 6 O -0.451 6.451 7 N -0.351 5.351 8 C -0.071 4.071 9 C -0.001 4.001 10 C 0.023 3.977 11 N -0.387 5.387 12 C -0.384 4.384 13 H 0.090 0.910 14 C -0.265 4.265 15 N -0.618 5.618 16 Si 0.807 3.193 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.219 1.219 20 C -0.180 4.180 21 C -0.171 4.171 22 C -0.162 4.162 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.157 0.843 27 H 0.133 0.867 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.012 0.988 34 H 0.047 0.953 35 H 0.207 0.793 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.964 15.021 20.890 27.247 hybrid contribution 0.126 -1.010 -1.110 1.505 sum -8.839 14.011 19.781 25.801 Atomic orbital electron populations 1.22908 0.80325 1.03134 1.01164 1.88014 1.20811 1.27011 1.94807 1.22480 0.95658 0.83588 0.92916 1.22305 1.02494 1.02146 0.91647 1.21378 0.81970 0.83145 0.84530 1.90740 1.40003 1.29482 1.84831 1.47984 1.46921 1.33976 1.06173 1.22129 0.93804 0.87305 1.03865 1.21267 0.94867 0.95357 0.88597 1.20930 0.95011 0.93322 0.88419 1.42414 1.20564 1.40227 1.35481 1.19627 1.00633 1.09010 1.09152 0.91017 1.25643 0.97440 1.02938 1.00490 1.69827 1.14869 1.45721 1.31368 0.85002 0.77782 0.78388 0.78122 1.19157 1.21176 1.21898 1.23521 0.98803 1.01129 0.94555 1.22777 0.97692 1.01214 0.95400 1.22930 0.94495 1.01809 0.96936 0.90004 0.91620 0.93456 0.84325 0.86683 0.90099 0.90835 0.88562 0.88824 0.92623 0.98780 0.95298 0.79261 0.93713 0.86334 0.89975 0.91130 0.89387 0.93966 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.63 113.37 1.20 1.60 16 2 O -0.39 -10.83 10.25 -146.12 -1.50 -12.33 16 3 C 0.09 2.01 0.39 -10.27 0.00 2.01 16 4 C -0.15 -2.69 3.78 29.85 0.11 -2.58 16 5 C 0.50 15.08 7.46 87.66 0.65 15.74 16 6 O -0.57 -23.82 14.30 -0.19 0.00 -23.82 16 7 N -0.62 -17.18 2.87 -846.76 -2.43 -19.62 16 8 C 0.07 1.14 10.27 127.77 1.31 2.45 16 9 C 0.12 4.48 5.52 86.38 0.48 4.95 16 10 C 0.15 6.80 6.58 86.38 0.57 7.37 16 11 N -0.74 -41.11 5.60 -343.44 -1.92 -43.03 16 12 C -0.25 -15.09 9.99 84.03 0.84 -14.25 16 13 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 14 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 15 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 16 Si 0.98 47.78 29.55 68.60 2.03 49.81 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 20 C -0.14 -1.88 7.21 31.12 0.22 -1.66 16 21 C -0.13 -2.25 8.02 31.12 0.25 -2.00 16 22 C -0.12 -2.93 6.11 31.12 0.19 -2.74 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.07 0.90 6.84 -2.39 -0.02 0.88 16 25 H 0.05 0.82 6.52 -2.39 -0.02 0.80 16 26 H 0.14 1.50 8.00 -2.39 -0.02 1.49 16 27 H 0.12 1.61 5.64 -2.38 -0.01 1.59 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.25 8.07 -2.39 -0.02 1.23 16 30 H 0.10 1.00 6.35 -2.39 -0.02 0.99 16 31 H 0.09 3.03 8.07 -2.39 -0.02 3.01 16 32 H 0.06 2.34 7.42 -2.38 -0.02 2.32 16 33 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.38 21.64 7.67 -92.71 -0.71 20.93 16 36 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 37 H 0.12 0.90 8.00 -2.39 -0.02 0.88 16 38 H 0.08 0.96 6.81 -2.38 -0.02 0.94 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 40 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.04 1.33 7.99 -2.39 -0.02 1.31 16 42 H 0.10 2.00 8.10 -2.39 -0.02 1.98 16 Total: -1.00 -81.05 338.88 3.04 -78.01 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.29 Total: 24.95 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.30 Total: 7.00 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -4.07 Total: -123.62 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.50 Total: -36.14 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -81.05 3.04 -78.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317581015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.548 kcal (2) G-P(sol) polarization free energy of solvation -81.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds