Wall clock time and date at job start Mon Mar 30 2020 01:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42892 * 109.47152 * 2 1 4 4 C 1.42899 * 114.00214 * 184.93266 * 3 2 1 5 5 H 1.09005 * 109.46609 * 24.59221 * 4 3 2 6 6 C 1.50700 * 109.47198 * 144.58445 * 4 3 2 7 7 O 1.21286 * 120.00110 * 11.10760 * 6 4 3 8 8 N 1.34776 * 120.00203 * 191.09703 * 6 4 3 9 9 C 1.46500 * 120.00127 * 5.35300 * 8 6 4 10 10 C 1.46504 * 120.00275 * 185.61764 * 8 6 4 11 11 C 1.52993 * 109.47367 * 269.73271 * 10 8 6 12 12 N 1.46504 * 109.47367 * 180.02562 * 11 10 8 13 13 C 1.36930 * 120.00327 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00042 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00165 * 179.97438 * 13 12 11 16 16 N 1.31622 * 120.00233 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99823 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46873 * 90.00506 * 17 15 13 19 19 H 1.48501 * 109.47395 * 209.99903 * 17 15 13 20 20 H 1.48496 * 109.47367 * 330.00368 * 17 15 13 21 21 C 1.52996 * 109.47503 * 264.59066 * 4 3 2 22 22 C 1.53001 * 117.49937 * 12.28106 * 21 4 3 23 23 C 1.53006 * 117.49820 * 303.62135 * 21 4 3 24 24 H 1.08997 * 109.46994 * 59.99756 * 1 2 3 25 25 H 1.08997 * 109.46673 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46614 * 299.99759 * 1 2 3 27 27 H 1.09007 * 109.46945 * 240.00226 * 2 1 3 28 28 H 1.08997 * 109.46994 * 120.00244 * 2 1 3 29 29 H 1.08995 * 109.47689 * 84.97059 * 9 8 6 30 30 H 1.09000 * 109.47044 * 204.97969 * 9 8 6 31 31 H 1.09005 * 109.46628 * 324.97749 * 9 8 6 32 32 H 1.09002 * 109.46467 * 29.72882 * 10 8 6 33 33 H 1.08994 * 109.47317 * 149.72494 * 10 8 6 34 34 H 1.09000 * 109.46886 * 299.99809 * 11 10 8 35 35 H 1.08999 * 109.47557 * 59.99845 * 11 10 8 36 36 H 0.96999 * 119.99330 * 359.97438 * 12 11 10 37 37 H 0.96996 * 119.99701 * 179.97438 * 16 15 13 38 38 H 1.09005 * 115.55235 * 157.95522 * 21 4 3 39 39 H 1.09003 * 117.49496 * 0.02562 * 22 21 4 40 40 H 1.08996 * 117.49641 * 145.02445 * 22 21 4 41 41 H 1.08999 * 117.49664 * 214.98137 * 23 21 4 42 42 H 1.08997 * 117.49651 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4263 1.4617 -0.1122 5 1 3.8251 0.5719 -0.5996 6 6 3.7690 2.6793 -0.9315 7 8 2.9076 3.4882 -1.2051 8 7 5.0325 2.8694 -1.3601 9 6 6.0468 1.8374 -1.1312 10 6 5.3932 4.1106 -2.0498 11 6 5.1869 3.9358 -3.5557 12 7 5.5482 5.1768 -4.2455 13 6 5.4436 5.2580 -5.6084 14 1 5.0952 4.4071 -6.1749 15 6 5.7853 6.4340 -6.2618 16 7 5.6853 6.5120 -7.5719 17 14 6.3872 7.9060 -5.2819 18 1 7.8650 7.8421 -5.1500 19 1 6.0068 9.1577 -5.9846 20 1 5.7686 7.8886 -3.9320 21 6 4.0391 1.5969 1.2831 22 6 3.1366 1.3009 2.4827 23 6 3.5405 2.7430 2.1656 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.9982 1.0967 -1.9293 30 1 7.0357 2.2959 -1.1206 31 1 5.8612 1.3519 -0.1731 32 1 4.7627 4.9232 -1.6887 33 1 6.4386 4.3461 -1.8512 34 1 5.8173 3.1231 -3.9168 35 1 4.1414 3.7003 -3.7544 36 1 5.8607 5.9411 -3.7366 37 1 5.9237 7.3339 -8.0284 38 1 5.0904 1.3203 1.3638 39 1 2.1065 1.0095 2.2776 40 1 3.5943 0.8300 3.3526 41 1 4.2636 3.2201 2.8271 42 1 2.7762 3.4009 1.7519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317587380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:36 Heat of formation + Delta-G solvation = -30.577157 kcal Electronic energy + Delta-G solvation = -21332.962785 eV Core-core repulsion = 18122.195791 eV Total energy + Delta-G solvation = -3210.766994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44705 -38.37034 -36.30382 -35.88138 -34.46286 -31.80737 -31.41703 -29.36535 -27.61641 -26.39182 -23.55561 -23.27926 -22.43880 -21.59597 -21.07206 -19.35864 -17.60627 -17.24702 -16.99295 -16.75827 -15.74606 -15.20313 -15.06330 -14.65948 -14.18992 -13.84535 -13.57882 -13.50036 -13.23098 -12.77124 -12.65187 -12.62555 -12.59047 -12.28779 -11.73524 -11.53837 -11.48999 -11.39991 -11.10945 -11.04569 -10.80306 -10.71072 -10.60329 -10.13689 -9.97709 -9.56939 -9.33782 -8.86108 -8.55454 -7.20724 -5.73012 -3.09007 2.65332 2.70861 3.40849 3.44224 3.44604 3.48531 3.67739 4.31939 4.48209 4.56356 4.62947 4.75721 4.83315 4.89458 4.97671 5.06188 5.11768 5.12172 5.27801 5.40958 5.42171 5.45781 5.51783 5.60591 5.63158 5.64745 5.68378 5.79091 5.85646 5.94016 5.96565 6.01503 6.45895 6.65830 6.84120 6.90777 7.43693 8.02350 8.27509 8.45390 9.24015 9.96171 10.15693 11.45440 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.003892 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.334953 B = 7193.035132 C = 7594.952181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.106 3.894 5 H 0.088 0.912 6 C 0.516 3.484 7 O -0.509 6.509 8 N -0.609 5.609 9 C 0.071 3.929 10 C 0.108 3.892 11 C 0.146 3.854 12 N -0.754 5.754 13 C -0.242 4.242 14 H 0.090 0.910 15 C 0.004 3.996 16 N -0.935 5.935 17 Si 0.885 3.115 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.276 1.276 21 C -0.185 4.185 22 C -0.166 4.166 23 C -0.164 4.164 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.032 0.968 36 H 0.361 0.639 37 H 0.259 0.741 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -16.151 22.585 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.270 6.270 4 C 0.044 3.956 5 H 0.105 0.895 6 C 0.302 3.698 7 O -0.383 6.383 8 N -0.345 5.345 9 C -0.072 4.072 10 C -0.015 4.015 11 C 0.018 3.982 12 N -0.400 5.400 13 C -0.372 4.372 14 H 0.107 0.893 15 C -0.192 4.192 16 N -0.583 5.583 17 Si 0.715 3.285 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.202 1.202 21 C -0.204 4.204 22 C -0.203 4.203 23 C -0.201 4.201 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.121 -15.617 22.209 27.329 hybrid contribution 0.802 0.779 0.450 1.205 sum -2.318 -14.838 22.659 27.184 Atomic orbital electron populations 1.21734 0.93423 1.02168 1.03518 1.22666 0.95956 0.83609 1.00217 1.88042 1.18702 1.26313 1.93989 1.21329 0.83330 0.97166 0.93762 0.89460 1.20271 0.82265 0.87489 0.79815 1.90755 1.46584 1.45159 1.55788 1.47651 1.09208 1.19623 1.58021 1.21984 0.92395 0.91598 1.01249 1.21743 1.00704 0.85510 0.93521 1.20901 0.98464 0.89884 0.88998 1.42565 1.81312 1.11159 1.04946 1.19039 1.37487 0.99664 0.81015 0.89264 1.24669 1.01559 0.97572 0.95377 1.69705 1.54711 1.27338 1.06538 0.86524 0.78734 0.83554 0.79638 1.21058 1.21645 1.20231 1.22760 0.99451 1.07180 0.90975 1.22977 1.00610 0.99312 0.97364 1.22929 1.03581 0.91518 1.02034 0.91506 0.91059 0.91819 0.93181 0.92975 0.92349 0.90400 0.91194 0.89926 0.90456 0.95552 0.95038 0.80689 0.93056 0.86377 0.87873 0.88825 0.88781 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.47 5.84 37.16 0.22 0.69 16 3 O -0.35 -4.50 8.31 -54.89 -0.46 -4.96 16 4 C 0.11 1.21 2.14 -27.89 -0.06 1.15 16 5 H 0.09 0.79 7.08 -51.93 -0.37 0.43 16 6 C 0.52 7.99 6.73 -10.99 -0.07 7.92 16 7 O -0.51 -10.43 16.17 -14.11 -0.23 -10.66 16 8 N -0.61 -8.44 2.87 -181.57 -0.52 -8.96 16 9 C 0.07 0.64 9.97 59.85 0.60 1.24 16 10 C 0.11 1.79 5.52 -4.04 -0.02 1.77 16 11 C 0.15 3.06 6.58 -4.04 -0.03 3.03 16 12 N -0.75 -18.97 5.41 -59.91 -0.32 -19.29 16 13 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 14 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 15 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 16 N -0.93 -30.17 13.97 55.49 0.78 -29.40 16 17 Si 0.89 22.69 27.74 -169.99 -4.71 17.98 16 18 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 21 C -0.19 -1.68 5.12 -90.62 -0.46 -2.14 16 22 C -0.17 -1.36 9.47 -26.69 -0.25 -1.62 16 23 C -0.16 -1.64 9.86 -26.69 -0.26 -1.91 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.42 7.98 -51.92 -0.41 0.00 16 28 H 0.05 0.37 7.09 -51.93 -0.37 0.00 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.63 7.83 -51.93 -0.41 0.22 16 31 H 0.07 0.46 4.60 -51.93 -0.24 0.23 16 32 H 0.08 1.52 7.50 -51.93 -0.39 1.13 16 33 H 0.08 1.11 7.86 -51.93 -0.41 0.71 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.36 8.71 5.53 -40.82 -0.23 8.48 16 37 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 38 H 0.12 0.82 6.34 -51.93 -0.33 0.49 16 39 H 0.10 0.91 5.96 -51.93 -0.31 0.60 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -36.39 340.12 -7.42 -43.81 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.85 Total: 4.41 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.22 Total: 1.95 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.07 Total: -57.65 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.68 Total: -15.62 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.98 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.39 -7.42 -43.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317587380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.229 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds