Wall clock time and date at job start Mon Mar 30 2020 01:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42892 * 109.47152 * 2 1 4 4 C 1.42899 * 114.00214 * 184.93266 * 3 2 1 5 5 H 1.09005 * 109.46609 * 24.59221 * 4 3 2 6 6 C 1.50700 * 109.47198 * 144.58445 * 4 3 2 7 7 O 1.21286 * 120.00110 * 11.10760 * 6 4 3 8 8 N 1.34776 * 120.00203 * 191.09703 * 6 4 3 9 9 C 1.46500 * 120.00127 * 5.35300 * 8 6 4 10 10 C 1.46504 * 120.00275 * 185.61764 * 8 6 4 11 11 C 1.52993 * 109.47367 * 269.73271 * 10 8 6 12 12 N 1.46504 * 109.47367 * 180.02562 * 11 10 8 13 13 C 1.36930 * 120.00327 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00042 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00165 * 179.97438 * 13 12 11 16 16 N 1.31622 * 120.00233 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99823 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46873 * 90.00506 * 17 15 13 19 19 H 1.48501 * 109.47395 * 209.99903 * 17 15 13 20 20 H 1.48496 * 109.47367 * 330.00368 * 17 15 13 21 21 C 1.52996 * 109.47503 * 264.59066 * 4 3 2 22 22 C 1.53001 * 117.49937 * 12.28106 * 21 4 3 23 23 C 1.53006 * 117.49820 * 303.62135 * 21 4 3 24 24 H 1.08997 * 109.46994 * 59.99756 * 1 2 3 25 25 H 1.08997 * 109.46673 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46614 * 299.99759 * 1 2 3 27 27 H 1.09007 * 109.46945 * 240.00226 * 2 1 3 28 28 H 1.08997 * 109.46994 * 120.00244 * 2 1 3 29 29 H 1.08995 * 109.47689 * 84.97059 * 9 8 6 30 30 H 1.09000 * 109.47044 * 204.97969 * 9 8 6 31 31 H 1.09005 * 109.46628 * 324.97749 * 9 8 6 32 32 H 1.09002 * 109.46467 * 29.72882 * 10 8 6 33 33 H 1.08994 * 109.47317 * 149.72494 * 10 8 6 34 34 H 1.09000 * 109.46886 * 299.99809 * 11 10 8 35 35 H 1.08999 * 109.47557 * 59.99845 * 11 10 8 36 36 H 0.96999 * 119.99330 * 359.97438 * 12 11 10 37 37 H 0.96996 * 119.99701 * 179.97438 * 16 15 13 38 38 H 1.09005 * 115.55235 * 157.95522 * 21 4 3 39 39 H 1.09003 * 117.49496 * 0.02562 * 22 21 4 40 40 H 1.08996 * 117.49641 * 145.02445 * 22 21 4 41 41 H 1.08999 * 117.49664 * 214.98137 * 23 21 4 42 42 H 1.08997 * 117.49651 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4263 1.4617 -0.1122 5 1 3.8251 0.5719 -0.5996 6 6 3.7690 2.6793 -0.9315 7 8 2.9076 3.4882 -1.2051 8 7 5.0325 2.8694 -1.3601 9 6 6.0468 1.8374 -1.1312 10 6 5.3932 4.1106 -2.0498 11 6 5.1869 3.9358 -3.5557 12 7 5.5482 5.1768 -4.2455 13 6 5.4436 5.2580 -5.6084 14 1 5.0952 4.4071 -6.1749 15 6 5.7853 6.4340 -6.2618 16 7 5.6853 6.5120 -7.5719 17 14 6.3872 7.9060 -5.2819 18 1 7.8650 7.8421 -5.1500 19 1 6.0068 9.1577 -5.9846 20 1 5.7686 7.8886 -3.9320 21 6 4.0391 1.5969 1.2831 22 6 3.1366 1.3009 2.4827 23 6 3.5405 2.7430 2.1656 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.9982 1.0967 -1.9293 30 1 7.0357 2.2959 -1.1206 31 1 5.8612 1.3519 -0.1731 32 1 4.7627 4.9232 -1.6887 33 1 6.4386 4.3461 -1.8512 34 1 5.8173 3.1231 -3.9168 35 1 4.1414 3.7003 -3.7544 36 1 5.8607 5.9411 -3.7366 37 1 5.9237 7.3339 -8.0284 38 1 5.0904 1.3203 1.3638 39 1 2.1065 1.0095 2.2776 40 1 3.5943 0.8300 3.3526 41 1 4.2636 3.2201 2.8271 42 1 2.7762 3.4009 1.7519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317587380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:36 Heat of formation + Delta-G solvation = -56.041641 kcal Electronic energy + Delta-G solvation = -21334.067008 eV Core-core repulsion = 18122.195791 eV Total energy + Delta-G solvation = -3211.871217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47843 -39.35327 -37.45892 -37.01915 -36.13725 -33.71541 -32.38519 -30.82529 -28.67384 -27.51729 -25.31291 -23.98687 -23.37155 -23.10547 -22.03261 -20.54324 -19.64879 -18.13811 -18.00333 -17.70908 -16.97647 -16.39503 -16.32482 -15.83783 -15.66490 -15.36282 -14.97146 -14.83756 -14.53560 -14.07777 -13.65157 -13.51217 -13.45958 -13.26620 -13.08313 -12.95473 -12.80946 -12.42272 -12.34108 -12.22894 -12.15099 -12.11393 -11.86407 -11.64983 -11.28219 -11.03494 -10.76970 -10.38500 -9.73796 -9.39672 -8.07632 -5.43784 1.35950 1.41063 1.48100 1.51307 1.69463 2.45474 2.71278 2.84371 3.23016 3.52017 3.62772 3.72199 3.84715 4.03268 4.10469 4.15826 4.18804 4.21355 4.28963 4.38416 4.40756 4.48897 4.50248 4.68109 4.78689 4.81995 4.91629 4.96403 4.99871 5.01877 5.02971 5.19649 5.25288 5.31867 5.45842 5.68265 6.08704 6.15323 6.39132 7.00468 7.13313 7.73644 7.95673 9.13834 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.003892 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.334953 B = 7193.035132 C = 7594.952181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.386 6.386 4 C 0.109 3.891 5 H 0.117 0.883 6 C 0.506 3.494 7 O -0.575 6.575 8 N -0.606 5.606 9 C 0.061 3.939 10 C 0.119 3.881 11 C 0.149 3.851 12 N -0.754 5.754 13 C -0.245 4.245 14 H 0.051 0.949 15 C -0.062 4.062 16 N -0.982 5.982 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.293 1.293 20 H -0.255 1.255 21 C -0.179 4.179 22 C -0.147 4.147 23 C -0.185 4.185 24 H 0.043 0.957 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.036 0.964 35 H -0.003 1.003 36 H 0.369 0.631 37 H 0.261 0.739 38 H 0.151 0.849 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 -17.518 25.637 31.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.305 6.305 4 C 0.047 3.953 5 H 0.134 0.866 6 C 0.294 3.706 7 O -0.453 6.453 8 N -0.339 5.339 9 C -0.080 4.080 10 C -0.004 4.004 11 C 0.022 3.978 12 N -0.401 5.401 13 C -0.375 4.375 14 H 0.069 0.931 15 C -0.253 4.253 16 N -0.632 5.632 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.220 1.220 20 H -0.180 1.180 21 C -0.197 4.197 22 C -0.184 4.184 23 C -0.222 4.222 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.202 0.798 37 H 0.069 0.931 38 H 0.169 0.831 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.021 -17.051 25.309 30.534 hybrid contribution 0.082 1.095 -0.568 1.236 sum -0.939 -15.956 24.740 29.455 Atomic orbital electron populations 1.21774 0.93361 1.03466 1.02242 1.22896 0.96138 0.82272 1.01685 1.88025 1.19633 1.28679 1.94173 1.21416 0.83296 0.95797 0.94765 0.86575 1.21218 0.81950 0.88077 0.79360 1.90718 1.48610 1.47655 1.58324 1.47762 1.09926 1.19626 1.56628 1.22363 0.91760 0.90641 1.03241 1.21466 1.02100 0.86604 0.90269 1.20961 0.96329 0.88500 0.92026 1.42510 1.81242 1.12918 1.03437 1.18984 1.36883 0.98682 0.82998 0.93141 1.25592 1.02103 1.01100 0.96543 1.69895 1.56171 1.28414 1.08742 0.85319 0.78962 0.78352 0.78615 1.19153 1.21977 1.18002 1.22861 1.01023 1.06319 0.89470 1.23042 1.00272 0.97371 0.97686 1.22859 1.03663 0.92201 1.03444 0.93745 0.88434 0.92133 0.92567 0.90406 0.91562 0.88629 0.88070 0.92107 0.87118 0.94579 0.98505 0.79770 0.93057 0.83136 0.88755 0.85982 0.87308 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.28 71.98 0.74 -1.65 16 2 C 0.05 0.75 5.84 71.98 0.42 1.17 16 3 O -0.39 -9.73 8.31 -130.18 -1.08 -10.81 16 4 C 0.11 2.29 2.14 29.85 0.06 2.36 16 5 H 0.12 1.73 7.08 -2.38 -0.02 1.71 16 6 C 0.51 15.58 6.73 87.66 0.59 16.17 16 7 O -0.57 -24.76 16.17 15.75 0.25 -24.50 16 8 N -0.61 -15.79 2.87 -846.76 -2.43 -18.23 16 9 C 0.06 0.87 9.97 127.77 1.27 2.14 16 10 C 0.12 3.84 5.52 86.38 0.48 4.32 16 11 C 0.15 6.32 6.58 86.38 0.57 6.89 16 12 N -0.75 -37.96 5.41 -343.46 -1.86 -39.82 16 13 C -0.24 -14.89 10.47 84.03 0.88 -14.01 16 14 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 15 C -0.06 -3.78 5.50 84.86 0.47 -3.32 16 16 N -0.98 -64.91 13.97 21.65 0.30 -64.61 16 17 Si 0.96 46.66 27.74 68.60 1.90 48.56 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 20 H -0.26 -11.39 6.52 99.48 0.65 -10.74 16 21 C -0.18 -2.67 5.12 -10.79 -0.06 -2.72 16 22 C -0.15 -1.98 9.47 30.62 0.29 -1.69 16 23 C -0.18 -3.47 9.86 30.62 0.30 -3.17 16 24 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.84 7.98 -2.38 -0.02 0.82 16 28 H 0.08 0.87 7.09 -2.39 -0.02 0.85 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 1.09 7.83 -2.39 -0.02 1.07 16 31 H 0.10 0.82 4.60 -2.38 -0.01 0.81 16 32 H 0.06 2.25 7.50 -2.39 -0.02 2.23 16 33 H 0.11 2.84 7.86 -2.39 -0.02 2.82 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.37 17.26 5.53 -92.71 -0.51 16.75 16 37 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 38 H 0.15 1.26 6.34 -2.38 -0.02 1.24 16 39 H 0.09 1.47 5.96 -2.39 -0.01 1.45 16 40 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -84.45 340.12 3.54 -80.91 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.43 Total: 21.99 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.02 Total: 6.50 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -3.99 Total: -122.65 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.83 Total: -35.31 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.90 Total: 48.56 kcal Total: -84.45 3.54 -80.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317587380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.872 kcal (2) G-P(sol) polarization free energy of solvation -84.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds