Wall clock time and date at job start Mon Mar 30 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.42896 * 113.99956 * 185.14476 * 3 2 1 5 5 H 1.09007 * 109.46964 * 337.63442 * 4 3 2 6 6 C 1.50700 * 109.47195 * 217.64141 * 4 3 2 7 7 O 1.21284 * 119.99537 * 354.99299 * 6 4 3 8 8 N 1.34770 * 120.00404 * 174.99860 * 6 4 3 9 9 C 1.46508 * 119.99903 * 359.97438 * 8 6 4 10 10 C 1.46505 * 120.00425 * 179.97438 * 8 6 4 11 11 C 1.52995 * 109.46959 * 89.99814 * 10 8 6 12 12 N 1.46503 * 109.47037 * 180.02562 * 11 10 8 13 13 C 1.36936 * 120.00369 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99445 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00072 * 179.97438 * 13 12 11 16 16 N 1.31626 * 119.99717 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00031 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47270 * 90.00239 * 17 15 13 19 19 H 1.48500 * 109.46707 * 209.99681 * 17 15 13 20 20 H 1.48492 * 109.47121 * 329.99842 * 17 15 13 21 21 C 1.52994 * 109.47452 * 97.63622 * 4 3 2 22 22 C 1.53004 * 117.51917 * 348.32650 * 21 4 3 23 23 C 1.53005 * 60.00039 * 107.47897 * 22 21 4 24 24 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47387 * 300.00686 * 1 2 3 26 26 H 1.08997 * 109.46946 * 60.00654 * 1 2 3 27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3 28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3 29 29 H 1.08997 * 109.46949 * 89.99775 * 9 8 6 30 30 H 1.09001 * 109.46804 * 210.00022 * 9 8 6 31 31 H 1.08995 * 109.46926 * 329.99986 * 9 8 6 32 32 H 1.08999 * 109.46990 * 210.00318 * 10 8 6 33 33 H 1.09003 * 109.46635 * 329.99794 * 10 8 6 34 34 H 1.08999 * 109.47682 * 300.00081 * 11 10 8 35 35 H 1.08996 * 109.47663 * 60.00122 * 11 10 8 36 36 H 0.97002 * 119.99989 * 359.97438 * 12 11 10 37 37 H 0.97001 * 119.99614 * 180.02562 * 16 15 13 38 38 H 1.09005 * 115.54943 * 202.62230 * 21 4 3 39 39 H 1.09003 * 117.49661 * 214.96906 * 22 21 4 40 40 H 1.08996 * 117.49600 * 359.97438 * 22 21 4 41 41 H 1.08996 * 117.50034 * 252.51226 * 23 22 21 42 42 H 1.09004 * 117.49694 * 107.48839 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 -0.1171 5 1 3.8935 0.5323 0.2080 6 6 3.9112 2.5971 0.7470 7 8 3.1126 3.3016 1.3275 8 7 5.2325 2.8297 0.8747 9 6 6.1972 1.9784 0.1739 10 6 5.7043 3.9337 1.7143 11 6 5.9143 3.4329 3.1446 12 7 6.3855 4.5370 3.9844 13 6 6.6441 4.3253 5.3123 14 1 6.5002 3.3444 5.7407 15 6 7.0910 5.3714 6.1078 16 7 7.3390 5.1679 7.3844 17 14 7.3392 7.0681 5.3669 18 1 6.0803 7.8473 5.4816 19 1 8.4251 7.7721 6.0952 20 1 7.7095 6.9337 3.9352 21 6 3.7969 1.7364 -1.5757 22 6 2.7001 1.5646 -2.6285 23 6 3.1774 2.9662 -2.2427 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 6.4038 2.3978 -0.8107 30 1 7.1220 1.9279 0.7487 31 1 5.7836 0.9762 0.0623 32 1 6.6471 4.3128 1.3199 33 1 4.9629 4.7327 1.7142 34 1 4.9716 3.0537 3.5390 35 1 6.6557 2.6339 3.1448 36 1 6.5151 5.4180 3.5995 37 1 7.6510 5.8990 7.9403 38 1 4.8144 1.4683 -1.8605 39 1 2.9959 1.1835 -3.6060 40 1 1.7140 1.2555 -2.2821 41 1 2.5052 3.5793 -1.6425 42 1 3.7872 3.5071 -2.9664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317587381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:38 Heat of formation + Delta-G solvation = -32.425433 kcal Electronic energy + Delta-G solvation = -21347.376789 eV Core-core repulsion = 18136.529648 eV Total energy + Delta-G solvation = -3210.847141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44549 -38.34721 -36.33988 -35.87119 -34.45868 -31.80861 -31.42423 -29.37094 -27.59999 -26.40948 -23.54389 -23.22396 -22.48287 -21.59238 -21.04426 -19.34342 -17.60393 -17.20609 -17.05157 -16.70455 -15.80691 -15.17906 -15.02247 -14.69996 -14.21860 -13.84463 -13.62534 -13.47462 -13.14800 -12.81288 -12.71015 -12.61872 -12.54403 -12.27454 -11.70670 -11.57442 -11.54000 -11.38142 -11.12574 -11.05293 -10.78262 -10.71864 -10.60302 -10.14710 -9.97783 -9.57836 -9.33098 -8.86970 -8.55520 -7.21828 -5.73939 -3.10055 2.66010 2.72971 3.40051 3.44039 3.44403 3.48216 3.68449 4.31032 4.48153 4.58979 4.62271 4.79851 4.85779 4.88927 4.98066 5.02641 5.12265 5.14448 5.26649 5.41702 5.42951 5.45928 5.52886 5.59640 5.62425 5.63916 5.68159 5.77896 5.84826 5.93726 5.97787 6.01044 6.44023 6.63886 6.82151 6.90718 7.43852 8.01262 8.27900 8.44455 9.22997 9.95204 10.14609 11.44448 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.003884 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.141358 B = 7206.798311 C = 7622.332345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.105 3.895 5 H 0.090 0.910 6 C 0.515 3.485 7 O -0.512 6.512 8 N -0.608 5.608 9 C 0.076 3.924 10 C 0.106 3.894 11 C 0.146 3.854 12 N -0.754 5.754 13 C -0.243 4.243 14 H 0.090 0.910 15 C 0.004 3.996 16 N -0.935 5.935 17 Si 0.886 3.114 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.184 4.184 22 C -0.165 4.165 23 C -0.164 4.164 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.026 0.974 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -11.870 -23.740 27.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.271 6.271 4 C 0.044 3.956 5 H 0.107 0.893 6 C 0.301 3.699 7 O -0.386 6.386 8 N -0.344 5.344 9 C -0.067 4.067 10 C -0.016 4.016 11 C 0.018 3.982 12 N -0.400 5.400 13 C -0.373 4.373 14 H 0.107 0.893 15 C -0.192 4.192 16 N -0.583 5.583 17 Si 0.716 3.284 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.203 4.203 22 C -0.202 4.202 23 C -0.201 4.201 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.025 -11.447 -23.183 27.072 hybrid contribution 0.603 0.900 -0.394 1.152 sum -7.423 -10.547 -23.577 26.874 Atomic orbital electron populations 1.21729 0.93427 1.02192 1.03421 1.22641 0.95945 0.83622 1.00206 1.88035 1.18625 1.26327 1.94066 1.21312 0.83707 0.97693 0.92915 0.89274 1.20296 0.82243 0.85736 0.81643 1.90750 1.53783 1.47853 1.46172 1.47649 1.05342 1.32905 1.48462 1.21914 0.93627 0.94093 0.97094 1.21721 1.00031 0.88836 0.91050 1.20894 0.97471 0.91510 0.88336 1.42559 1.81744 1.07712 1.07953 1.19034 1.37249 0.97743 0.83257 0.89262 1.24671 1.01374 0.97661 0.95452 1.69709 1.52031 1.31763 1.04748 0.86516 0.77776 0.85730 0.78331 1.20944 1.21690 1.20342 1.22775 0.99077 1.06060 0.92378 1.22944 0.99043 1.00256 0.97986 1.22901 1.03437 0.90876 1.02912 0.91048 0.91494 0.91901 0.93042 0.93132 0.92426 0.90384 0.91405 0.90440 0.89752 0.95110 0.95598 0.80652 0.93046 0.86356 0.88867 0.87929 0.88168 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.48 5.66 37.16 0.21 0.69 16 3 O -0.35 -4.50 8.20 -55.09 -0.45 -4.95 16 4 C 0.11 1.21 2.17 -27.89 -0.06 1.15 16 5 H 0.09 0.82 6.72 -51.93 -0.35 0.47 16 6 C 0.51 7.96 6.82 -10.99 -0.07 7.89 16 7 O -0.51 -10.45 16.09 -14.31 -0.23 -10.68 16 8 N -0.61 -8.39 2.87 -181.57 -0.52 -8.91 16 9 C 0.08 0.69 8.97 59.85 0.54 1.23 16 10 C 0.11 1.76 5.52 -4.04 -0.02 1.74 16 11 C 0.15 3.04 6.58 -4.04 -0.03 3.01 16 12 N -0.75 -18.87 5.41 -59.91 -0.32 -19.20 16 13 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 14 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 15 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 16 N -0.93 -30.07 13.97 55.49 0.78 -29.29 16 17 Si 0.89 22.67 27.74 -169.99 -4.71 17.96 16 18 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 21 C -0.18 -1.65 4.91 -90.62 -0.44 -2.09 16 22 C -0.17 -1.35 9.60 -26.73 -0.26 -1.61 16 23 C -0.16 -1.62 9.85 -26.73 -0.26 -1.88 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.37 7.69 -51.93 -0.40 -0.03 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 7.55 -51.93 -0.39 0.03 16 30 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.07 0.47 6.01 -51.93 -0.31 0.16 16 32 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.08 1.55 7.42 -51.93 -0.39 1.17 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.36 8.70 5.53 -40.82 -0.23 8.47 16 37 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 38 H 0.12 0.81 6.54 -51.93 -0.34 0.47 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.91 6.32 -51.93 -0.33 0.58 16 41 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -36.18 340.90 -7.57 -43.75 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.97 Total: 4.23 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -0.27 Total: 1.97 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.07 Total: -57.41 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.68 Total: -15.64 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.18 -7.57 -43.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317587381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.321 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds