Wall clock time and date at job start Mon Mar 30 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47165 * 2 1 4 4 C 1.42896 * 113.99956 * 185.14476 * 3 2 1 5 5 H 1.09007 * 109.46964 * 337.63442 * 4 3 2 6 6 C 1.50700 * 109.47195 * 217.64141 * 4 3 2 7 7 O 1.21284 * 119.99537 * 354.99299 * 6 4 3 8 8 N 1.34770 * 120.00404 * 174.99860 * 6 4 3 9 9 C 1.46508 * 119.99903 * 359.97438 * 8 6 4 10 10 C 1.46505 * 120.00425 * 179.97438 * 8 6 4 11 11 C 1.52995 * 109.46959 * 89.99814 * 10 8 6 12 12 N 1.46503 * 109.47037 * 180.02562 * 11 10 8 13 13 C 1.36936 * 120.00369 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99445 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00072 * 179.97438 * 13 12 11 16 16 N 1.31626 * 119.99717 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00031 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47270 * 90.00239 * 17 15 13 19 19 H 1.48500 * 109.46707 * 209.99681 * 17 15 13 20 20 H 1.48492 * 109.47121 * 329.99842 * 17 15 13 21 21 C 1.52994 * 109.47452 * 97.63622 * 4 3 2 22 22 C 1.53004 * 117.51917 * 348.32650 * 21 4 3 23 23 C 1.53005 * 60.00039 * 107.47897 * 22 21 4 24 24 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47387 * 300.00686 * 1 2 3 26 26 H 1.08997 * 109.46946 * 60.00654 * 1 2 3 27 27 H 1.08995 * 109.47387 * 239.99314 * 2 1 3 28 28 H 1.09005 * 109.46863 * 119.99708 * 2 1 3 29 29 H 1.08997 * 109.46949 * 89.99775 * 9 8 6 30 30 H 1.09001 * 109.46804 * 210.00022 * 9 8 6 31 31 H 1.08995 * 109.46926 * 329.99986 * 9 8 6 32 32 H 1.08999 * 109.46990 * 210.00318 * 10 8 6 33 33 H 1.09003 * 109.46635 * 329.99794 * 10 8 6 34 34 H 1.08999 * 109.47682 * 300.00081 * 11 10 8 35 35 H 1.08996 * 109.47663 * 60.00122 * 11 10 8 36 36 H 0.97002 * 119.99989 * 359.97438 * 12 11 10 37 37 H 0.97001 * 119.99614 * 180.02562 * 16 15 13 38 38 H 1.09005 * 115.54943 * 202.62230 * 21 4 3 39 39 H 1.09003 * 117.49661 * 214.96906 * 22 21 4 40 40 H 1.08996 * 117.49600 * 359.97438 * 22 21 4 41 41 H 1.08996 * 117.50034 * 252.51226 * 23 22 21 42 42 H 1.09004 * 117.49694 * 107.48839 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 -0.1171 5 1 3.8935 0.5323 0.2080 6 6 3.9112 2.5971 0.7470 7 8 3.1126 3.3016 1.3275 8 7 5.2325 2.8297 0.8747 9 6 6.1972 1.9784 0.1739 10 6 5.7043 3.9337 1.7143 11 6 5.9143 3.4329 3.1446 12 7 6.3855 4.5370 3.9844 13 6 6.6441 4.3253 5.3123 14 1 6.5002 3.3444 5.7407 15 6 7.0910 5.3714 6.1078 16 7 7.3390 5.1679 7.3844 17 14 7.3392 7.0681 5.3669 18 1 6.0803 7.8473 5.4816 19 1 8.4251 7.7721 6.0952 20 1 7.7095 6.9337 3.9352 21 6 3.7969 1.7364 -1.5757 22 6 2.7001 1.5646 -2.6285 23 6 3.1774 2.9662 -2.2427 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 6.4038 2.3978 -0.8107 30 1 7.1220 1.9279 0.7487 31 1 5.7836 0.9762 0.0623 32 1 6.6471 4.3128 1.3199 33 1 4.9629 4.7327 1.7142 34 1 4.9716 3.0537 3.5390 35 1 6.6557 2.6339 3.1448 36 1 6.5151 5.4180 3.5995 37 1 7.6510 5.8990 7.9403 38 1 4.8144 1.4683 -1.8605 39 1 2.9959 1.1835 -3.6060 40 1 1.7140 1.2555 -2.2821 41 1 2.5052 3.5793 -1.6425 42 1 3.7872 3.5071 -2.9664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317587381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:38 Heat of formation + Delta-G solvation = -57.601610 kcal Electronic energy + Delta-G solvation = -21348.468510 eV Core-core repulsion = 18136.529648 eV Total energy + Delta-G solvation = -3211.938862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47450 -39.32641 -37.47262 -37.03095 -36.11164 -33.70986 -32.38341 -30.82417 -28.65238 -27.53028 -25.29558 -23.92778 -23.37566 -23.12802 -21.98849 -20.52793 -19.63468 -18.12618 -18.02292 -17.66616 -17.01735 -16.40183 -16.28509 -15.81568 -15.64055 -15.37203 -15.05034 -14.83005 -14.50178 -14.00821 -13.62791 -13.54135 -13.45734 -13.24176 -13.08020 -12.98341 -12.79966 -12.41456 -12.33521 -12.30161 -12.12117 -12.10063 -11.85153 -11.62005 -11.27417 -11.04619 -10.77197 -10.37869 -9.72415 -9.39595 -8.07603 -5.43678 1.35469 1.41400 1.47646 1.53242 1.70358 2.45464 2.71698 2.85341 3.23431 3.51107 3.64029 3.72281 3.85888 4.06697 4.14007 4.14813 4.18390 4.23779 4.30265 4.35737 4.42630 4.48534 4.50485 4.72585 4.79674 4.82339 4.92818 4.96132 5.00720 5.01830 5.02798 5.19123 5.25472 5.34219 5.45321 5.68380 6.08564 6.15373 6.39757 7.00534 7.14055 7.73851 7.95400 9.13744 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.003884 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.141358 B = 7206.798311 C = 7622.332345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.385 6.385 4 C 0.107 3.893 5 H 0.117 0.883 6 C 0.505 3.495 7 O -0.577 6.577 8 N -0.604 5.604 9 C 0.065 3.935 10 C 0.118 3.882 11 C 0.150 3.850 12 N -0.755 5.755 13 C -0.244 4.244 14 H 0.052 0.948 15 C -0.061 4.061 16 N -0.982 5.982 17 Si 0.960 3.040 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.244 1.244 21 C -0.177 4.177 22 C -0.149 4.149 23 C -0.183 4.183 24 H 0.096 0.904 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.062 0.938 34 H -0.001 1.001 35 H 0.037 0.963 36 H 0.369 0.631 37 H 0.261 0.739 38 H 0.152 0.848 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 -12.625 -27.274 30.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.304 6.304 4 C 0.046 3.954 5 H 0.134 0.866 6 C 0.293 3.707 7 O -0.456 6.456 8 N -0.338 5.338 9 C -0.076 4.076 10 C -0.006 4.006 11 C 0.022 3.978 12 N -0.401 5.401 13 C -0.375 4.375 14 H 0.070 0.930 15 C -0.253 4.253 16 N -0.632 5.632 17 Si 0.785 3.215 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.168 1.168 21 C -0.195 4.195 22 C -0.185 4.185 23 C -0.220 4.220 24 H 0.115 0.885 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.017 0.983 35 H 0.055 0.945 36 H 0.202 0.798 37 H 0.069 0.931 38 H 0.169 0.831 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.754 -12.255 -26.787 30.221 hybrid contribution 0.157 1.014 0.757 1.276 sum -6.596 -11.241 -26.029 29.110 Atomic orbital electron populations 1.21761 0.93088 1.03479 1.02350 1.22860 0.96347 0.82327 1.01423 1.88019 1.19487 1.28570 1.94315 1.21406 0.83469 0.96746 0.93747 0.86574 1.21224 0.82212 0.86059 0.81195 1.90713 1.55556 1.50355 1.48926 1.47752 1.05868 1.32547 1.47610 1.22313 0.92676 0.94737 0.97896 1.21422 1.00809 0.89240 0.89102 1.20957 0.95794 0.90767 0.90256 1.42510 1.81650 1.09211 1.06772 1.18985 1.36728 0.96367 0.85380 0.93008 1.25577 1.01428 1.02465 0.95843 1.69894 1.53395 1.33323 1.06576 0.85350 0.77539 0.79349 0.79218 1.20858 1.21483 1.16811 1.22871 1.00857 1.05124 0.90649 1.23007 0.98407 0.98313 0.98805 1.22838 1.04031 0.91566 1.03593 0.88542 0.93690 0.91843 0.90335 0.93182 0.89586 0.89930 0.88825 0.87404 0.91975 0.98331 0.94468 0.79794 0.93071 0.83085 0.86098 0.88902 0.91973 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.05 0.78 5.66 71.98 0.41 1.19 16 3 O -0.39 -9.70 8.20 -129.99 -1.07 -10.77 16 4 C 0.11 2.27 2.17 29.85 0.06 2.33 16 5 H 0.12 1.77 6.72 -2.38 -0.02 1.75 16 6 C 0.50 15.48 6.82 87.66 0.60 16.08 16 7 O -0.58 -24.70 16.09 15.95 0.26 -24.45 16 8 N -0.60 -15.65 2.87 -846.74 -2.43 -18.08 16 9 C 0.06 0.91 8.97 127.77 1.15 2.06 16 10 C 0.12 3.79 5.52 86.38 0.48 4.27 16 11 C 0.15 6.24 6.58 86.38 0.57 6.81 16 12 N -0.75 -37.69 5.41 -343.46 -1.86 -39.55 16 13 C -0.24 -14.73 10.47 84.03 0.88 -13.85 16 14 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 15 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 16 N -0.98 -64.69 13.97 21.65 0.30 -64.38 16 17 Si 0.96 46.56 27.74 68.60 1.90 48.47 16 18 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 20 H -0.24 -10.42 6.52 99.48 0.65 -9.77 16 21 C -0.18 -2.58 4.91 -10.79 -0.05 -2.63 16 22 C -0.15 -1.98 9.60 30.60 0.29 -1.69 16 23 C -0.18 -3.33 9.85 30.60 0.30 -3.02 16 24 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.88 7.69 -2.39 -0.02 0.87 16 28 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.09 0.79 7.55 -2.39 -0.02 0.78 16 30 H 0.08 1.14 8.07 -2.39 -0.02 1.13 16 31 H 0.09 0.86 6.01 -2.39 -0.01 0.84 16 32 H 0.11 2.83 8.07 -2.39 -0.02 2.81 16 33 H 0.06 2.30 7.42 -2.39 -0.02 2.28 16 34 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.37 17.17 5.53 -92.71 -0.51 16.66 16 37 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 38 H 0.15 1.22 6.54 -2.38 -0.02 1.20 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.45 6.32 -2.39 -0.02 1.44 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 42 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -83.73 340.90 3.42 -80.31 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.43 Total: 21.76 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.89 Total: 6.69 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -3.99 Total: -122.01 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.81 Total: -35.21 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.90 Total: 48.47 kcal Total: -83.73 3.42 -80.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317587381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.704 kcal (2) G-P(sol) polarization free energy of solvation -83.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds