Wall clock time and date at job start Mon Mar 30 2020 01:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99989 * 2 1 4 4 C 1.52998 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46979 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99750 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00203 * 179.97438 * 5 4 3 8 8 C 1.47027 * 125.64602 * 0.03011 * 7 5 4 9 9 C 1.54324 * 107.26966 * 178.91728 * 8 7 5 10 10 C 1.55155 * 102.94097 * 337.80411 * 9 8 7 11 11 H 1.08999 * 111.00895 * 277.39093 * 10 9 8 12 12 C 1.53001 * 111.00393 * 153.57765 * 10 9 8 13 13 N 1.46500 * 109.47039 * 66.45062 * 12 10 9 14 14 C 1.46497 * 119.99495 * 90.00412 * 13 12 10 15 15 C 1.36930 * 120.00195 * 270.00252 * 13 12 10 16 16 H 1.08004 * 120.00122 * 22.73610 * 15 13 12 17 17 C 1.38816 * 119.99902 * 202.74469 * 15 13 12 18 18 N 1.31616 * 120.00155 * 13.36517 * 17 15 13 19 19 Si 1.86800 * 119.99974 * 193.36968 * 17 15 13 20 20 H 1.48507 * 109.47163 * 59.99544 * 19 17 15 21 21 H 1.48495 * 109.47062 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46744 * 299.99859 * 19 17 15 23 23 C 1.47423 * 125.64963 * 180.02562 * 7 5 4 24 24 H 1.09005 * 109.47221 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47201 * 300.00025 * 1 2 3 26 26 H 1.09002 * 109.47192 * 60.00176 * 1 2 3 27 27 H 1.09000 * 109.47388 * 60.00345 * 3 2 1 28 28 H 1.08997 * 109.47404 * 299.99878 * 3 2 1 29 29 H 1.08997 * 109.47648 * 59.99788 * 4 3 2 30 30 H 1.09002 * 109.47352 * 299.99279 * 4 3 2 31 31 H 1.08991 * 109.88272 * 59.49466 * 8 7 5 32 32 H 1.09002 * 109.87591 * 298.33385 * 8 7 5 33 33 H 1.09000 * 110.71800 * 96.16567 * 9 8 7 34 34 H 1.08996 * 110.71439 * 219.44240 * 9 8 7 35 35 H 1.09004 * 109.47229 * 186.45555 * 12 10 9 36 36 H 1.09003 * 109.47000 * 306.45362 * 12 10 9 37 37 H 1.08997 * 109.47820 * 95.13290 * 14 13 12 38 38 H 1.09007 * 109.47118 * 215.12833 * 14 13 12 39 39 H 1.09002 * 109.47772 * 335.12662 * 14 13 12 40 40 H 0.97002 * 120.00192 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.36886 * 85.31334 * 23 7 5 42 42 H 1.09004 * 110.45919 * 323.03690 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 8 3.4355 3.5425 -0.0008 7 7 5.4888 2.7022 -0.0014 8 6 6.4658 1.6036 -0.0016 9 6 7.8713 2.2404 -0.0295 10 6 7.6017 3.6518 -0.6146 11 1 7.5503 3.6204 -1.7029 12 6 8.6620 4.6510 -0.1473 13 7 9.9609 4.2879 -0.7195 14 6 10.3689 4.8352 -2.0157 15 6 10.7935 3.4372 -0.0427 16 1 10.3892 2.7570 0.6924 17 6 12.1573 3.4491 -0.3013 18 7 12.6882 4.4380 -0.9887 19 14 13.2391 2.0616 0.3262 20 1 12.7759 0.7735 -0.2498 21 1 14.6458 2.3079 -0.0807 22 1 13.1553 1.9999 1.8076 23 6 6.2181 3.9835 -0.0015 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8567 0.6438 -0.8908 30 1 3.8574 0.6436 0.8892 31 1 6.3233 0.9809 -0.8847 32 1 6.3487 1.0033 0.9007 33 1 8.2821 2.3124 0.9776 34 1 8.5382 1.6743 -0.6797 35 1 8.3872 5.6531 -0.4765 36 1 8.7258 4.6307 0.9407 37 1 10.9809 5.7234 -1.8588 38 1 10.9461 4.0879 -2.5602 39 1 9.4833 5.1016 -2.5927 40 1 13.6411 4.4462 -1.1698 41 1 6.3332 4.3545 1.0169 42 1 5.6973 4.7183 -0.6155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317824516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:15 Heat of formation + Delta-G solvation = -61.558840 kcal Electronic energy + Delta-G solvation = -20981.185639 eV Core-core repulsion = 17769.075178 eV Total energy + Delta-G solvation = -3212.110461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06162 -38.21371 -37.45820 -35.35307 -32.57557 -31.70266 -30.38609 -29.08011 -27.01505 -26.01160 -25.52875 -23.78549 -22.45684 -21.35620 -19.66399 -19.01473 -17.44368 -16.89844 -16.57222 -16.09714 -15.85247 -15.29682 -14.95647 -14.71898 -14.29933 -13.76164 -13.45730 -13.18091 -13.06013 -12.95272 -12.50222 -12.17395 -12.13998 -11.82549 -11.64369 -11.41421 -11.31879 -11.07503 -10.80985 -10.68167 -10.42280 -10.32534 -10.16395 -9.93605 -9.87084 -9.84965 -9.77312 -8.58807 -8.52421 -6.74339 -5.72391 -3.19043 2.60539 2.85127 3.37052 3.42875 3.43542 3.66203 4.46749 4.53335 4.78475 4.79558 4.93079 5.02561 5.06700 5.13890 5.23303 5.27843 5.37080 5.40419 5.47544 5.54806 5.60693 5.62177 5.77847 5.86274 5.97333 6.14866 6.24938 6.32383 6.52461 6.55333 6.69630 6.76073 6.85220 6.91415 7.36959 7.56875 7.72933 7.80157 8.13460 8.39439 9.23316 9.87310 10.36787 11.32424 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035378 B = 0.003400 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.271117 B = 8232.126041 C = 8798.013541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.077 3.923 4 C -0.135 4.135 5 C 0.530 3.470 6 O -0.552 6.552 7 N -0.613 5.613 8 C 0.095 3.905 9 C -0.111 4.111 10 C -0.117 4.117 11 H 0.075 0.925 12 C 0.162 3.838 13 N -0.600 5.600 14 C 0.162 3.838 15 C -0.253 4.253 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.908 5.908 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.109 3.891 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.040 0.960 39 H -0.003 1.003 40 H 0.252 0.748 41 H 0.067 0.933 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.002 -7.141 1.273 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.000 4.000 4 C -0.175 4.175 5 C 0.319 3.681 6 O -0.431 6.431 7 N -0.347 5.347 8 C -0.028 4.028 9 C -0.148 4.148 10 C -0.139 4.139 11 H 0.093 0.907 12 C 0.034 3.966 13 N -0.322 5.322 14 C 0.017 3.983 15 C -0.383 4.383 16 H 0.088 0.912 17 C -0.198 4.198 18 N -0.553 5.553 19 Si 0.732 3.268 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.210 1.210 23 C -0.013 4.013 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.132 -6.754 1.213 19.387 hybrid contribution 0.573 -0.630 0.261 0.890 sum -17.559 -7.384 1.474 19.105 Atomic orbital electron populations 1.22726 0.80693 1.02672 1.00191 1.87802 1.19991 1.28133 1.95569 1.22169 0.92024 0.84069 1.01741 1.21442 0.95121 0.95345 1.05621 1.19994 0.80874 0.90926 0.76329 1.90697 1.60214 1.41009 1.51136 1.48588 1.04689 1.09262 1.72141 1.22260 0.89789 0.89635 1.01124 1.22572 0.93239 0.96297 1.02727 1.23176 0.93379 0.97186 1.00199 0.90670 1.20617 0.85444 0.93711 0.96863 1.43848 1.14807 1.54469 1.19075 1.20790 0.93979 0.98391 0.85110 1.19151 0.87669 1.11991 1.19467 0.91224 1.25031 0.96778 0.97574 1.00386 1.70061 1.11201 1.30091 1.43897 0.86381 0.79779 0.82084 0.78552 1.21108 1.21733 1.20974 1.22362 0.92320 0.85493 1.01149 0.89581 0.93973 0.93974 0.92394 0.92393 0.88116 0.88130 0.91626 0.91652 0.90505 0.89371 0.94302 0.93184 0.95129 0.94156 0.98445 0.93745 0.91444 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.40 -4.26 10.70 -35.23 -0.38 -4.63 16 3 C 0.08 0.84 5.23 37.16 0.19 1.03 16 4 C -0.14 -1.45 5.26 -27.88 -0.15 -1.60 16 5 C 0.53 7.45 7.85 -10.98 -0.09 7.37 16 6 O -0.55 -9.53 16.24 5.56 0.09 -9.44 16 7 N -0.61 -8.52 3.33 -170.50 -0.57 -9.08 16 8 C 0.09 1.16 6.49 -3.06 -0.02 1.14 16 9 C -0.11 -1.67 5.13 -24.90 -0.13 -1.79 16 10 C -0.12 -1.89 3.29 -88.46 -0.29 -2.18 16 11 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 12 C 0.16 3.11 5.18 -4.04 -0.02 3.09 16 13 N -0.60 -14.28 2.87 -181.11 -0.52 -14.80 16 14 C 0.16 3.88 8.98 59.85 0.54 4.42 16 15 C -0.25 -6.54 8.98 -15.06 -0.14 -6.67 16 16 H 0.07 1.72 6.69 -52.48 -0.35 1.37 16 17 C 0.00 0.02 5.09 -17.43 -0.09 -0.07 16 18 N -0.91 -26.00 10.71 55.49 0.59 -25.41 16 19 Si 0.90 21.19 29.57 -169.99 -5.03 16.17 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.11 1.62 6.38 -2.52 -0.02 1.60 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.21 7.39 -51.93 -0.38 0.83 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.05 0.96 8.00 -51.93 -0.42 0.55 16 37 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 38 H 0.04 1.03 7.33 -51.92 -0.38 0.65 16 39 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 42 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -30.76 340.35 -7.13 -37.89 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.36 Total: -3.52 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 0.91 Total: 7.69 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.49 Total: -49.28 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.29 Total: -14.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.76 -7.13 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317824516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.671 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds