Wall clock time and date at job start Mon Mar 30 2020 01:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99989 * 2 1 4 4 C 1.52998 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46979 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99750 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00203 * 179.97438 * 5 4 3 8 8 C 1.47027 * 125.64602 * 0.03011 * 7 5 4 9 9 C 1.54324 * 107.26966 * 178.91728 * 8 7 5 10 10 C 1.55155 * 102.94097 * 337.80411 * 9 8 7 11 11 H 1.08999 * 111.00895 * 277.39093 * 10 9 8 12 12 C 1.53001 * 111.00393 * 153.57765 * 10 9 8 13 13 N 1.46500 * 109.47039 * 66.45062 * 12 10 9 14 14 C 1.46497 * 119.99495 * 90.00412 * 13 12 10 15 15 C 1.36930 * 120.00195 * 270.00252 * 13 12 10 16 16 H 1.08004 * 120.00122 * 22.73610 * 15 13 12 17 17 C 1.38816 * 119.99902 * 202.74469 * 15 13 12 18 18 N 1.31616 * 120.00155 * 13.36517 * 17 15 13 19 19 Si 1.86800 * 119.99974 * 193.36968 * 17 15 13 20 20 H 1.48507 * 109.47163 * 59.99544 * 19 17 15 21 21 H 1.48495 * 109.47062 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46744 * 299.99859 * 19 17 15 23 23 C 1.47423 * 125.64963 * 180.02562 * 7 5 4 24 24 H 1.09005 * 109.47221 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47201 * 300.00025 * 1 2 3 26 26 H 1.09002 * 109.47192 * 60.00176 * 1 2 3 27 27 H 1.09000 * 109.47388 * 60.00345 * 3 2 1 28 28 H 1.08997 * 109.47404 * 299.99878 * 3 2 1 29 29 H 1.08997 * 109.47648 * 59.99788 * 4 3 2 30 30 H 1.09002 * 109.47352 * 299.99279 * 4 3 2 31 31 H 1.08991 * 109.88272 * 59.49466 * 8 7 5 32 32 H 1.09002 * 109.87591 * 298.33385 * 8 7 5 33 33 H 1.09000 * 110.71800 * 96.16567 * 9 8 7 34 34 H 1.08996 * 110.71439 * 219.44240 * 9 8 7 35 35 H 1.09004 * 109.47229 * 186.45555 * 12 10 9 36 36 H 1.09003 * 109.47000 * 306.45362 * 12 10 9 37 37 H 1.08997 * 109.47820 * 95.13290 * 14 13 12 38 38 H 1.09007 * 109.47118 * 215.12833 * 14 13 12 39 39 H 1.09002 * 109.47772 * 335.12662 * 14 13 12 40 40 H 0.97002 * 120.00192 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.36886 * 85.31334 * 23 7 5 42 42 H 1.09004 * 110.45919 * 323.03690 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 8 3.4355 3.5425 -0.0008 7 7 5.4888 2.7022 -0.0014 8 6 6.4658 1.6036 -0.0016 9 6 7.8713 2.2404 -0.0295 10 6 7.6017 3.6518 -0.6146 11 1 7.5503 3.6204 -1.7029 12 6 8.6620 4.6510 -0.1473 13 7 9.9609 4.2879 -0.7195 14 6 10.3689 4.8352 -2.0157 15 6 10.7935 3.4372 -0.0427 16 1 10.3892 2.7570 0.6924 17 6 12.1573 3.4491 -0.3013 18 7 12.6882 4.4380 -0.9887 19 14 13.2391 2.0616 0.3262 20 1 12.7759 0.7735 -0.2498 21 1 14.6458 2.3079 -0.0807 22 1 13.1553 1.9999 1.8076 23 6 6.2181 3.9835 -0.0015 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8567 0.6438 -0.8908 30 1 3.8574 0.6436 0.8892 31 1 6.3233 0.9809 -0.8847 32 1 6.3487 1.0033 0.9007 33 1 8.2821 2.3124 0.9776 34 1 8.5382 1.6743 -0.6797 35 1 8.3872 5.6531 -0.4765 36 1 8.7258 4.6307 0.9407 37 1 10.9809 5.7234 -1.8588 38 1 10.9461 4.0879 -2.5602 39 1 9.4833 5.1016 -2.5927 40 1 13.6411 4.4462 -1.1698 41 1 6.3332 4.3545 1.0169 42 1 5.6973 4.7183 -0.6155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317824516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:15 Heat of formation + Delta-G solvation = -80.905463 kcal Electronic energy + Delta-G solvation = -20982.024572 eV Core-core repulsion = 17769.075178 eV Total energy + Delta-G solvation = -3212.949393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18180 -39.21084 -38.52917 -37.05454 -33.99971 -32.93764 -31.85902 -30.30960 -28.02897 -27.72306 -26.92512 -24.92071 -23.47876 -23.06793 -21.04061 -20.09736 -18.73529 -18.42325 -17.54540 -17.08732 -17.01334 -16.63372 -16.18990 -15.73767 -15.50970 -15.17662 -15.09678 -14.59898 -14.42720 -14.16015 -13.69233 -13.57966 -13.23779 -12.99397 -12.82836 -12.76245 -12.59681 -12.42252 -12.30632 -12.15861 -12.13820 -11.99025 -11.70177 -11.56050 -11.36194 -11.02031 -10.68117 -10.55472 -9.67865 -8.70875 -7.75435 -5.23583 1.51189 1.53009 1.53866 1.58938 1.84472 2.56391 2.84845 3.37452 3.47104 3.69637 3.78611 3.94896 4.00355 4.07343 4.22059 4.36940 4.42735 4.49078 4.52244 4.53103 4.65264 4.66890 4.79176 4.80008 4.85622 4.87782 4.88807 4.92717 5.07187 5.13989 5.25114 5.34461 5.44358 5.52422 5.71396 5.76858 6.13325 6.39176 6.50019 7.05243 7.21676 7.93901 8.39163 9.28234 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035378 B = 0.003400 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.271117 B = 8232.126041 C = 8798.013541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.080 3.920 4 C -0.126 4.126 5 C 0.528 3.472 6 O -0.589 6.589 7 N -0.615 5.615 8 C 0.102 3.898 9 C -0.109 4.109 10 C -0.106 4.106 11 H 0.068 0.932 12 C 0.161 3.839 13 N -0.615 5.615 14 C 0.176 3.824 15 C -0.247 4.247 16 H 0.082 0.918 17 C -0.061 4.061 18 N -0.944 5.944 19 Si 0.964 3.036 20 H -0.276 1.276 21 H -0.303 1.303 22 H -0.275 1.275 23 C 0.116 3.884 24 H 0.103 0.897 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.002 0.998 38 H 0.015 0.985 39 H 0.027 0.973 40 H 0.244 0.756 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.564 -9.115 1.983 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.003 3.997 4 C -0.166 4.166 5 C 0.319 3.681 6 O -0.471 6.471 7 N -0.348 5.348 8 C -0.020 4.020 9 C -0.147 4.147 10 C -0.128 4.128 11 H 0.086 0.914 12 C 0.034 3.966 13 N -0.338 5.338 14 C 0.031 3.969 15 C -0.377 4.377 16 H 0.100 0.900 17 C -0.255 4.255 18 N -0.592 5.592 19 Si 0.793 3.207 20 H -0.202 1.202 21 H -0.229 1.229 22 H -0.201 1.201 23 C -0.007 4.007 24 H 0.122 0.878 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.034 0.966 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.736 -8.758 1.942 21.679 hybrid contribution 0.954 0.025 0.051 0.956 sum -18.782 -8.732 1.993 20.808 Atomic orbital electron populations 1.22948 0.79207 1.04083 1.00804 1.87770 1.21671 1.27787 1.95635 1.22080 0.92315 0.84232 1.01119 1.21414 0.94711 0.93219 1.07238 1.20557 0.80499 0.91815 0.75261 1.90684 1.60973 1.42562 1.52844 1.48639 1.05038 1.09203 1.71916 1.22289 0.87261 0.89068 1.03369 1.22484 0.94964 0.95489 1.01740 1.22854 0.93133 0.97097 0.99718 0.91394 1.20749 0.84198 0.94968 0.96678 1.44085 1.16132 1.54416 1.19127 1.20522 0.94433 0.96362 0.85608 1.19549 0.87875 1.11678 1.18579 0.90033 1.25797 0.98323 0.99795 1.01569 1.70241 1.10816 1.32047 1.46097 0.85387 0.77390 0.79692 0.78278 1.20168 1.22933 1.20121 1.22178 0.91405 0.86149 1.01010 0.87826 0.93345 0.93422 0.93021 0.93170 0.86479 0.86250 0.89709 0.89123 0.91195 0.90726 0.93687 0.93253 0.97995 0.96630 0.95421 0.94633 0.91136 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.88 10.70 -148.98 -1.59 -9.47 16 3 C 0.08 1.59 5.23 71.98 0.38 1.96 16 4 C -0.13 -2.34 5.26 29.85 0.16 -2.18 16 5 C 0.53 13.70 7.85 87.66 0.69 14.39 16 6 O -0.59 -19.70 16.24 -3.04 -0.05 -19.75 16 7 N -0.62 -15.51 3.33 -811.73 -2.70 -18.21 16 8 C 0.10 2.14 6.49 86.73 0.56 2.71 16 9 C -0.11 -3.04 5.13 31.78 0.16 -2.88 16 10 C -0.11 -3.26 3.29 -9.39 -0.03 -3.30 16 11 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 12 C 0.16 6.01 5.18 86.38 0.45 6.46 16 13 N -0.61 -29.10 2.87 -726.92 -2.09 -31.19 16 14 C 0.18 8.52 8.98 127.77 1.15 9.67 16 15 C -0.25 -12.61 8.98 84.04 0.75 -11.86 16 16 H 0.08 3.91 6.69 -2.91 -0.02 3.89 16 17 C -0.06 -3.29 5.09 84.86 0.43 -2.86 16 18 N -0.94 -55.34 10.71 21.65 0.23 -55.11 16 19 Si 0.96 43.61 29.57 68.60 2.03 45.64 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 C 0.12 3.23 6.38 86.86 0.55 3.78 16 24 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 28 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 2.05 7.39 -2.39 -0.02 2.04 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.04 1.62 8.07 -2.38 -0.02 1.60 16 36 H 0.05 1.85 8.00 -2.39 -0.02 1.83 16 37 H 0.00 0.09 7.34 -2.39 -0.02 0.08 16 38 H 0.01 0.79 7.33 -2.38 -0.02 0.78 16 39 H 0.03 1.14 8.03 -2.39 -0.02 1.12 16 40 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 42 H 0.07 1.96 8.04 -2.38 -0.02 1.94 16 Total: -1.00 -66.13 340.35 3.30 -62.83 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.97 Total: 7.78 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 6.50 Total: 17.48 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.55 Total: -104.51 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.64 Total: -29.22 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -66.13 3.30 -62.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317824516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.075 kcal (2) G-P(sol) polarization free energy of solvation -66.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds