Wall clock time and date at job start Mon Mar 30 2020 01:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99529 * 2 1 4 4 C 1.53000 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47399 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99834 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00373 * 180.27438 * 5 4 3 8 8 C 1.47028 * 125.64435 * 359.75550 * 7 5 4 9 9 C 1.54325 * 107.26917 * 181.02071 * 8 7 5 10 10 C 1.55161 * 102.94136 * 22.18897 * 9 8 7 11 11 H 1.08998 * 111.00118 * 82.61360 * 10 9 8 12 12 C 1.52998 * 111.00035 * 206.42479 * 10 9 8 13 13 N 1.46503 * 109.47652 * 293.54725 * 12 10 9 14 14 C 1.46496 * 119.99972 * 89.99572 * 13 12 10 15 15 C 1.36943 * 119.99674 * 270.00673 * 13 12 10 16 16 H 1.07994 * 120.00169 * 23.31178 * 15 13 12 17 17 C 1.38816 * 119.99633 * 203.31156 * 15 13 12 18 18 N 1.31625 * 119.99785 * 14.41444 * 17 15 13 19 19 Si 1.86796 * 119.99950 * 194.41665 * 17 15 13 20 20 H 1.48502 * 109.47020 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47241 * 119.99778 * 19 17 15 22 22 H 1.48501 * 109.46981 * 239.99992 * 19 17 15 23 23 C 1.47421 * 125.65384 * 179.44037 * 7 5 4 24 24 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47107 * 299.99697 * 1 2 3 26 26 H 1.09003 * 109.46852 * 60.00144 * 1 2 3 27 27 H 1.09006 * 109.46924 * 60.00521 * 3 2 1 28 28 H 1.08994 * 109.47629 * 300.00213 * 3 2 1 29 29 H 1.08999 * 109.46820 * 60.00244 * 4 3 2 30 30 H 1.09002 * 109.47069 * 300.00412 * 4 3 2 31 31 H 1.09002 * 109.87857 * 300.42933 * 8 7 5 32 32 H 1.08998 * 109.88725 * 61.44881 * 8 7 5 33 33 H 1.08994 * 110.72091 * 140.55201 * 9 8 7 34 34 H 1.08999 * 110.71611 * 263.82889 * 9 8 7 35 35 H 1.08999 * 109.47573 * 53.55117 * 12 10 9 36 36 H 1.09002 * 109.47157 * 173.55015 * 12 10 9 37 37 H 1.09003 * 109.46720 * 95.19236 * 14 13 12 38 38 H 1.08997 * 109.47263 * 215.19100 * 14 13 12 39 39 H 1.09001 * 109.47229 * 335.19433 * 14 13 12 40 40 H 0.97000 * 119.99658 * 179.97438 * 18 17 15 41 41 H 1.09004 * 110.36593 * 274.75138 * 23 7 5 42 42 H 1.09005 * 110.36514 * 37.06968 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 8 3.4355 3.5426 0.0017 7 7 5.4887 2.7024 -0.0037 8 6 6.4658 1.6037 -0.0048 9 6 7.8714 2.2406 0.0152 10 6 7.6043 3.6538 0.5976 11 1 7.5577 3.6253 1.6862 12 6 8.6625 4.6515 0.1228 13 7 9.9640 4.2903 0.6903 14 6 10.8515 3.3780 -0.0351 15 6 10.3506 4.8052 1.8989 16 1 9.6068 5.1509 2.6014 17 6 11.6987 4.8827 2.2209 18 7 12.6092 4.7351 1.2819 19 14 12.2205 5.1964 3.9869 20 1 11.0146 5.3257 4.8438 21 1 13.0501 4.0622 4.4668 22 1 13.0115 6.4515 4.0537 23 6 6.2180 3.9835 -0.0154 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 6.3273 0.9836 0.8808 32 1 6.3430 0.9993 -0.9035 33 1 8.5412 1.6764 0.6640 34 1 8.2778 2.3099 -0.9938 35 1 8.7216 4.6283 -0.9653 36 1 8.3892 5.6546 0.4505 37 1 11.5639 3.9560 -0.6239 38 1 11.3909 2.7533 0.6768 39 1 10.2603 2.7462 -0.6979 40 1 13.5511 4.7896 1.5069 41 1 6.3291 4.3474 -1.0369 42 1 5.6988 4.7212 0.5966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317824517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:17 Heat of formation + Delta-G solvation = -61.703777 kcal Electronic energy + Delta-G solvation = -20927.670191 eV Core-core repulsion = 17715.553445 eV Total energy + Delta-G solvation = -3212.116746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08743 -38.23337 -37.48470 -35.35975 -32.60227 -31.73072 -30.32063 -29.20078 -27.02167 -26.04835 -25.53306 -23.82622 -22.52114 -21.20508 -19.82378 -19.10327 -17.48994 -16.69084 -16.53990 -16.12096 -16.01806 -15.30751 -14.97951 -14.73524 -14.35282 -13.72111 -13.59779 -13.33418 -13.10767 -12.73397 -12.55584 -12.16977 -12.10975 -11.96066 -11.66391 -11.43523 -11.32638 -11.03539 -10.91304 -10.75399 -10.45439 -10.36346 -10.03323 -9.94664 -9.91657 -9.83408 -9.82092 -8.60614 -8.54060 -6.73830 -5.73043 -3.19945 2.58864 2.82898 3.36922 3.44814 3.46627 3.64352 4.45988 4.52220 4.76854 4.77815 4.84941 5.01278 5.05755 5.12426 5.15939 5.26045 5.36188 5.36945 5.46459 5.51751 5.57176 5.59743 5.73679 5.86350 5.95099 6.08089 6.21777 6.22126 6.41023 6.51052 6.72809 6.74004 6.83994 6.87608 7.33691 7.54321 7.71823 7.80890 8.11678 8.39596 9.23323 9.86965 10.35784 11.31391 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.003194 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.152156 B = 8764.729312 C = 8907.523410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.077 3.923 4 C -0.135 4.135 5 C 0.530 3.470 6 O -0.550 6.550 7 N -0.614 5.614 8 C 0.097 3.903 9 C -0.116 4.116 10 C -0.117 4.117 11 H 0.082 0.918 12 C 0.162 3.838 13 N -0.599 5.599 14 C 0.160 3.840 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.906 5.906 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.109 3.891 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.029 0.971 38 H 0.037 0.963 39 H 0.002 0.998 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 -9.533 -4.330 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.000 4.000 4 C -0.175 4.175 5 C 0.319 3.681 6 O -0.429 6.429 7 N -0.348 5.348 8 C -0.026 4.026 9 C -0.154 4.154 10 C -0.140 4.140 11 H 0.101 0.899 12 C 0.034 3.966 13 N -0.321 5.321 14 C 0.016 3.984 15 C -0.384 4.384 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.551 5.551 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.014 4.014 24 H 0.104 0.896 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.531 -9.187 -4.323 20.258 hybrid contribution 0.298 0.259 0.986 1.062 sum -17.233 -8.927 -3.337 19.693 Atomic orbital electron populations 1.22730 0.80669 1.02677 1.00209 1.87802 1.20012 1.28126 1.95575 1.22171 0.92007 0.84079 1.01771 1.21442 0.95158 0.95324 1.05592 1.19993 0.80857 0.90941 0.76327 1.90703 1.60176 1.41004 1.50998 1.48582 1.04691 1.09229 1.72255 1.22193 0.89540 0.89637 1.01192 1.22624 0.93792 0.96858 1.02139 1.23242 0.93394 0.96428 1.00896 0.89934 1.20611 0.85601 0.94934 0.95465 1.43849 1.14646 1.51919 1.21717 1.20838 0.91731 0.91420 0.94450 1.19207 0.90736 1.36599 0.91859 0.91456 1.25018 0.96277 1.00796 0.97587 1.70086 0.99975 1.54519 1.30528 0.86224 0.78349 0.77416 0.84799 1.20327 1.21660 1.21776 1.22417 0.92365 0.85512 1.01057 0.89576 0.93944 0.93976 0.92361 0.92391 0.88152 0.88104 0.91537 0.91658 0.89716 0.90805 0.94327 0.93141 0.95239 0.94399 0.97921 0.93841 0.91490 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.40 -4.20 10.70 -35.23 -0.38 -4.57 16 3 C 0.08 0.82 5.23 37.16 0.19 1.02 16 4 C -0.14 -1.42 5.26 -27.88 -0.15 -1.57 16 5 C 0.53 7.37 7.85 -10.99 -0.09 7.28 16 6 O -0.55 -9.48 16.24 5.56 0.09 -9.39 16 7 N -0.61 -8.36 3.32 -170.38 -0.57 -8.92 16 8 C 0.10 1.12 6.48 -3.06 -0.02 1.10 16 9 C -0.12 -1.62 5.02 -24.89 -0.13 -1.75 16 10 C -0.12 -1.89 3.31 -88.36 -0.29 -2.19 16 11 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 12 C 0.16 3.12 5.16 -4.04 -0.02 3.10 16 13 N -0.60 -14.33 2.84 -181.12 -0.51 -14.84 16 14 C 0.16 3.74 8.61 59.84 0.52 4.25 16 15 C -0.25 -6.80 9.64 -15.06 -0.15 -6.95 16 16 H 0.07 1.78 7.87 -52.49 -0.41 1.36 16 17 C 0.00 0.04 5.07 -17.43 -0.09 -0.05 16 18 N -0.91 -26.12 10.81 55.49 0.60 -25.52 16 19 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.11 1.60 6.38 -2.42 -0.02 1.59 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.02 7.15 -51.93 -0.37 0.65 16 35 H 0.04 0.70 8.04 -51.93 -0.42 0.28 16 36 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 37 H 0.03 0.76 7.32 -51.93 -0.38 0.38 16 38 H 0.04 0.95 7.40 -51.93 -0.38 0.57 16 39 H 0.00 0.05 6.16 -51.93 -0.32 -0.27 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 42 H 0.07 1.16 8.03 -51.93 -0.42 0.75 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -31.39 339.69 -7.11 -38.50 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -7.32 Total: -4.19 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.88 Total: 7.22 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.48 Total: -49.28 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.29 Total: -13.96 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.39 -7.11 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317824517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.202 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds