Wall clock time and date at job start Mon Mar 30 2020 01:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99529 * 2 1 4 4 C 1.53000 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47399 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99834 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00373 * 180.27438 * 5 4 3 8 8 C 1.47028 * 125.64435 * 359.75550 * 7 5 4 9 9 C 1.54325 * 107.26917 * 181.02071 * 8 7 5 10 10 C 1.55161 * 102.94136 * 22.18897 * 9 8 7 11 11 H 1.08998 * 111.00118 * 82.61360 * 10 9 8 12 12 C 1.52998 * 111.00035 * 206.42479 * 10 9 8 13 13 N 1.46503 * 109.47652 * 293.54725 * 12 10 9 14 14 C 1.46496 * 119.99972 * 89.99572 * 13 12 10 15 15 C 1.36943 * 119.99674 * 270.00673 * 13 12 10 16 16 H 1.07994 * 120.00169 * 23.31178 * 15 13 12 17 17 C 1.38816 * 119.99633 * 203.31156 * 15 13 12 18 18 N 1.31625 * 119.99785 * 14.41444 * 17 15 13 19 19 Si 1.86796 * 119.99950 * 194.41665 * 17 15 13 20 20 H 1.48502 * 109.47020 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47241 * 119.99778 * 19 17 15 22 22 H 1.48501 * 109.46981 * 239.99992 * 19 17 15 23 23 C 1.47421 * 125.65384 * 179.44037 * 7 5 4 24 24 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47107 * 299.99697 * 1 2 3 26 26 H 1.09003 * 109.46852 * 60.00144 * 1 2 3 27 27 H 1.09006 * 109.46924 * 60.00521 * 3 2 1 28 28 H 1.08994 * 109.47629 * 300.00213 * 3 2 1 29 29 H 1.08999 * 109.46820 * 60.00244 * 4 3 2 30 30 H 1.09002 * 109.47069 * 300.00412 * 4 3 2 31 31 H 1.09002 * 109.87857 * 300.42933 * 8 7 5 32 32 H 1.08998 * 109.88725 * 61.44881 * 8 7 5 33 33 H 1.08994 * 110.72091 * 140.55201 * 9 8 7 34 34 H 1.08999 * 110.71611 * 263.82889 * 9 8 7 35 35 H 1.08999 * 109.47573 * 53.55117 * 12 10 9 36 36 H 1.09002 * 109.47157 * 173.55015 * 12 10 9 37 37 H 1.09003 * 109.46720 * 95.19236 * 14 13 12 38 38 H 1.08997 * 109.47263 * 215.19100 * 14 13 12 39 39 H 1.09001 * 109.47229 * 335.19433 * 14 13 12 40 40 H 0.97000 * 119.99658 * 179.97438 * 18 17 15 41 41 H 1.09004 * 110.36593 * 274.75138 * 23 7 5 42 42 H 1.09005 * 110.36514 * 37.06968 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 8 3.4355 3.5426 0.0017 7 7 5.4887 2.7024 -0.0037 8 6 6.4658 1.6037 -0.0048 9 6 7.8714 2.2406 0.0152 10 6 7.6043 3.6538 0.5976 11 1 7.5577 3.6253 1.6862 12 6 8.6625 4.6515 0.1228 13 7 9.9640 4.2903 0.6903 14 6 10.8515 3.3780 -0.0351 15 6 10.3506 4.8052 1.8989 16 1 9.6068 5.1509 2.6014 17 6 11.6987 4.8827 2.2209 18 7 12.6092 4.7351 1.2819 19 14 12.2205 5.1964 3.9869 20 1 11.0146 5.3257 4.8438 21 1 13.0501 4.0622 4.4668 22 1 13.0115 6.4515 4.0537 23 6 6.2180 3.9835 -0.0154 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 6.3273 0.9836 0.8808 32 1 6.3430 0.9993 -0.9035 33 1 8.5412 1.6764 0.6640 34 1 8.2778 2.3099 -0.9938 35 1 8.7216 4.6283 -0.9653 36 1 8.3892 5.6546 0.4505 37 1 11.5639 3.9560 -0.6239 38 1 11.3909 2.7533 0.6768 39 1 10.2603 2.7462 -0.6979 40 1 13.5511 4.7896 1.5069 41 1 6.3291 4.3474 -1.0369 42 1 5.6988 4.7212 0.5966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317824517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:16 Heat of formation + Delta-G solvation = -81.787032 kcal Electronic energy + Delta-G solvation = -20928.541066 eV Core-core repulsion = 17715.553445 eV Total energy + Delta-G solvation = -3212.987621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18815 -39.22226 -38.53508 -37.06274 -34.04748 -32.94587 -31.80027 -30.40129 -28.00332 -27.75894 -26.93257 -24.97388 -23.50634 -22.90859 -21.19957 -20.15700 -18.66590 -18.35019 -17.58926 -17.14076 -17.00699 -16.69112 -16.19626 -15.74492 -15.47933 -15.42348 -15.05461 -14.61101 -14.32807 -14.11714 -13.66867 -13.62363 -13.40223 -12.89160 -12.83219 -12.78852 -12.55205 -12.51556 -12.40564 -12.19162 -12.10893 -11.95679 -11.70725 -11.59919 -11.35840 -11.02730 -10.68425 -10.61024 -9.68180 -8.72115 -7.80149 -5.28724 1.45852 1.48126 1.53717 1.57695 1.83968 2.52293 2.84632 3.31919 3.46752 3.68959 3.74920 3.92270 3.99697 4.08172 4.20398 4.36476 4.42680 4.49266 4.52013 4.52899 4.62463 4.65798 4.78539 4.79463 4.85512 4.86887 4.88524 4.97454 5.05915 5.13145 5.26118 5.31769 5.38790 5.51826 5.67356 5.77504 6.12822 6.36195 6.49725 7.05193 7.19129 7.92127 8.34384 9.22033 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.003194 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.152156 B = 8764.729312 C = 8907.523410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.079 3.921 4 C -0.125 4.125 5 C 0.527 3.473 6 O -0.590 6.590 7 N -0.616 5.616 8 C 0.102 3.898 9 C -0.113 4.113 10 C -0.108 4.108 11 H 0.061 0.939 12 C 0.161 3.839 13 N -0.614 5.614 14 C 0.175 3.825 15 C -0.257 4.257 16 H 0.066 0.934 17 C -0.054 4.054 18 N -0.937 5.937 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.294 1.294 23 C 0.116 3.884 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.039 0.961 37 H -0.001 1.001 38 H 0.011 0.989 39 H 0.044 0.956 40 H 0.247 0.753 41 H 0.075 0.925 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.796 -11.185 -4.564 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.002 3.998 4 C -0.165 4.165 5 C 0.318 3.682 6 O -0.472 6.472 7 N -0.349 5.349 8 C -0.019 4.019 9 C -0.151 4.151 10 C -0.129 4.129 11 H 0.080 0.920 12 C 0.034 3.966 13 N -0.337 5.337 14 C 0.031 3.969 15 C -0.387 4.387 16 H 0.084 0.916 17 C -0.249 4.249 18 N -0.585 5.585 19 Si 0.792 3.208 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.222 1.222 23 C -0.008 4.008 24 H 0.122 0.878 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.030 0.970 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.967 -10.860 -4.559 22.326 hybrid contribution 0.645 0.791 1.018 1.442 sum -18.322 -10.068 -3.541 21.204 Atomic orbital electron populations 1.22950 0.79213 1.04098 1.00788 1.87771 1.21661 1.27751 1.95634 1.22082 0.92395 0.84239 1.01080 1.21410 0.94638 0.93134 1.07306 1.20586 0.80533 0.91844 0.75258 1.90688 1.61025 1.42633 1.52831 1.48640 1.05064 1.09214 1.71941 1.22283 0.87121 0.88989 1.03554 1.22571 0.95452 0.95141 1.01902 1.22881 0.93213 0.97169 0.99674 0.91999 1.20739 0.84324 0.95310 0.96197 1.44066 1.16135 1.52152 1.21332 1.20594 0.91588 0.90945 0.93802 1.19482 0.90771 1.35456 0.92996 0.91609 1.25727 0.96497 1.01658 1.00974 1.70237 0.99854 1.56267 1.32094 0.85265 0.77938 0.76754 0.80857 1.19323 1.21764 1.22171 1.22217 0.91377 0.86143 1.01022 0.87784 0.93493 0.93321 0.93333 0.92977 0.85999 0.86525 0.89912 0.88607 0.90598 0.90205 0.92737 0.94262 0.98301 0.97001 0.93803 0.94371 0.90674 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.77 10.70 -148.98 -1.59 -9.37 16 3 C 0.08 1.57 5.23 71.98 0.38 1.94 16 4 C -0.13 -2.27 5.26 29.85 0.16 -2.11 16 5 C 0.53 13.61 7.85 87.66 0.69 14.30 16 6 O -0.59 -19.92 16.24 -3.04 -0.05 -19.97 16 7 N -0.62 -15.26 3.32 -811.35 -2.70 -17.96 16 8 C 0.10 1.99 6.48 86.73 0.56 2.55 16 9 C -0.11 -2.85 5.02 31.78 0.16 -2.69 16 10 C -0.11 -3.34 3.31 -9.33 -0.03 -3.37 16 11 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 12 C 0.16 6.08 5.16 86.38 0.45 6.52 16 13 N -0.61 -29.30 2.84 -726.94 -2.06 -31.37 16 14 C 0.18 8.17 8.61 127.77 1.10 9.27 16 15 C -0.26 -13.79 9.64 84.03 0.81 -12.98 16 16 H 0.07 3.49 7.87 -2.91 -0.02 3.46 16 17 C -0.05 -2.97 5.07 84.86 0.43 -2.54 16 18 N -0.94 -55.04 10.81 21.65 0.23 -54.81 16 19 Si 0.96 44.90 29.58 68.60 2.03 46.93 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 C 0.12 3.25 6.38 86.93 0.55 3.80 16 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 28 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 1.94 7.15 -2.39 -0.02 1.92 16 35 H 0.05 1.88 8.04 -2.39 -0.02 1.87 16 36 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 37 H 0.00 -0.07 7.32 -2.39 -0.02 -0.09 16 38 H 0.01 0.58 7.40 -2.39 -0.02 0.56 16 39 H 0.04 1.64 6.16 -2.39 -0.01 1.62 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.33 16 41 H 0.08 2.00 8.04 -2.38 -0.02 1.98 16 42 H 0.06 1.88 8.03 -2.38 -0.02 1.86 16 Total: -1.00 -68.16 339.69 3.33 -64.83 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.97 Total: 5.45 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.50 Total: 16.27 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -4.53 Total: -104.14 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.64 Total: -29.34 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.16 3.33 -64.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317824517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.958 kcal (2) G-P(sol) polarization free energy of solvation -68.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds