Wall clock time and date at job start Mon Mar 30 2020 01:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47402 * 2 1 4 4 C 1.42891 * 114.00094 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47185 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47444 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47058 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00456 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99803 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99890 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.88670 * 31.12428 * 10 9 7 12 12 C 1.55157 * 111.00193 * 155.00541 * 10 9 7 13 13 C 1.54326 * 102.94369 * 82.61180 * 12 10 9 14 14 N 1.47018 * 107.27077 * 22.19167 * 13 12 10 15 15 C 1.36933 * 125.64791 * 181.02164 * 14 13 12 16 16 H 1.08003 * 120.00191 * 169.69505 * 15 14 13 17 17 C 1.38815 * 120.00279 * 349.70283 * 15 14 13 18 18 N 1.31618 * 119.99973 * 152.99416 * 17 15 14 19 19 Si 1.86804 * 119.99596 * 332.99374 * 17 15 14 20 20 H 1.48502 * 109.47022 * 85.20223 * 19 17 15 21 21 H 1.48492 * 109.46735 * 205.20234 * 19 17 15 22 22 H 1.48498 * 109.47060 * 325.20175 * 19 17 15 23 23 C 1.47432 * 108.70453 * 1.28826 * 14 13 12 24 24 H 1.08998 * 109.46810 * 60.00384 * 1 2 3 25 25 H 1.08999 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47398 * 300.00292 * 1 2 3 27 27 H 1.09000 * 109.47398 * 239.99708 * 2 1 3 28 28 H 1.09005 * 109.47166 * 119.99621 * 2 1 3 29 29 H 1.09001 * 109.47421 * 59.99975 * 4 3 2 30 30 H 1.09004 * 109.47457 * 299.99575 * 4 3 2 31 31 H 1.09004 * 109.47345 * 59.99767 * 5 4 3 32 32 H 1.09007 * 109.47187 * 300.00170 * 5 4 3 33 33 H 1.09001 * 109.47159 * 60.00121 * 6 5 4 34 34 H 1.08996 * 109.47122 * 299.99842 * 6 5 4 35 35 H 0.96999 * 119.99901 * 0.02562 * 9 7 6 36 36 H 1.08996 * 110.71868 * 324.24729 * 12 10 9 37 37 H 1.09006 * 110.71967 * 200.97528 * 12 10 9 38 38 H 1.08994 * 109.88143 * 262.77454 * 13 12 10 39 39 H 1.09004 * 109.88181 * 141.60811 * 13 12 10 40 40 H 0.96998 * 120.00029 * 5.04598 * 18 17 15 41 41 H 1.08998 * 110.36548 * 94.48169 * 23 14 13 42 42 H 1.08998 * 110.36594 * 216.80377 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3507 3.0592 0.0012 7 6 5.7392 4.5152 -0.0002 8 8 4.8808 5.3720 -0.0015 9 7 7.0407 4.8653 0.0012 10 6 7.4185 6.2808 0.0004 11 1 6.6757 6.8815 0.5254 12 6 8.8295 6.4801 0.6141 13 6 9.7686 6.1702 -0.5708 14 7 8.9925 6.3621 -1.8046 15 6 9.4573 6.1681 -3.0780 16 1 8.7693 6.1732 -3.9105 17 6 10.8126 5.9648 -3.2988 18 7 11.2126 5.2779 -4.3478 19 14 12.0685 6.6663 -2.1072 20 1 12.2605 5.7217 -0.9775 21 1 13.3608 6.8657 -2.8108 22 1 11.5825 7.9691 -1.5859 23 6 7.6330 6.8041 -1.4441 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8340 0.9764 -0.8891 30 1 3.8333 0.9767 0.8909 31 1 3.4222 3.4225 0.8894 32 1 3.4230 3.4214 -0.8906 33 1 5.7542 2.5750 -0.8881 34 1 5.7526 2.5763 0.8918 35 1 7.7273 4.1801 0.0026 36 1 8.9967 5.7795 1.4321 37 1 8.9614 7.5080 0.9521 38 1 10.1165 5.1392 -0.5082 39 1 10.6190 6.8520 -0.5579 40 1 10.5664 4.9763 -5.0053 41 1 7.5686 7.8919 -1.4695 42 1 6.8995 6.3639 -2.1195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318235633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:25 Heat of formation + Delta-G solvation = -69.545448 kcal Electronic energy + Delta-G solvation = -20705.597821 eV Core-core repulsion = 17493.141034 eV Total energy + Delta-G solvation = -3212.456786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.77031 -38.33453 -37.56607 -33.97362 -33.82516 -32.10996 -31.24918 -29.53500 -28.22594 -26.64803 -23.88241 -23.06378 -22.19273 -20.78918 -20.42620 -19.75785 -17.58982 -17.19582 -16.67302 -16.57099 -15.88014 -15.51333 -15.20314 -14.53782 -14.29278 -14.16781 -13.63480 -13.21653 -13.09838 -12.93205 -12.86333 -12.43979 -12.01378 -11.79566 -11.76800 -11.68505 -11.25971 -11.13644 -11.09008 -10.95498 -10.92846 -10.84454 -10.31383 -9.82701 -9.68296 -9.56185 -9.18603 -8.83705 -8.39428 -7.10330 -6.33951 -3.18843 2.82767 3.18186 3.38587 3.50051 3.63979 3.67551 4.57728 4.70873 4.72597 4.82046 4.83710 4.96224 5.00012 5.02952 5.08483 5.19565 5.23332 5.30311 5.34535 5.40369 5.43950 5.54500 5.56527 5.59732 5.80431 5.86094 5.99701 6.07027 6.13921 6.16201 6.25195 6.47405 6.57094 6.71204 6.90251 6.98746 7.68191 7.78122 8.33238 8.44503 9.03441 9.58232 10.25549 11.14184 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.003282 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.054259 B = 8529.512183 C = 9009.575076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.063 3.937 5 C -0.102 4.102 6 C -0.138 4.138 7 C 0.514 3.486 8 O -0.547 6.547 9 N -0.708 5.708 10 C 0.128 3.872 11 H 0.096 0.904 12 C -0.137 4.137 13 C 0.113 3.887 14 N -0.608 5.608 15 C -0.328 4.328 16 H 0.075 0.925 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.071 2.929 20 H -0.294 1.294 21 H -0.300 1.300 22 H -0.294 1.294 23 C 0.123 3.877 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.031 0.969 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 -9.181 12.881 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.140 4.140 6 C -0.179 4.179 7 C 0.301 3.699 8 O -0.425 6.425 9 N -0.358 5.358 10 C 0.023 3.977 11 H 0.114 0.886 12 C -0.176 4.176 13 C -0.012 4.012 14 N -0.335 5.335 15 C -0.455 4.455 16 H 0.093 0.907 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.905 3.095 20 H -0.222 1.222 21 H -0.228 1.228 22 H -0.222 1.222 23 C -0.004 4.004 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.237 0.763 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.864 -8.350 13.100 20.169 hybrid contribution -0.956 -0.561 -0.448 1.195 sum -13.820 -8.911 12.652 20.748 Atomic orbital electron populations 1.21746 0.93800 1.02143 1.03229 1.22453 0.95613 0.83941 1.00002 1.87896 1.21288 1.26265 1.95423 1.22518 0.81150 0.97592 1.00137 1.21197 0.93471 0.94385 1.04912 1.21538 0.97350 0.94330 1.04633 1.20488 0.82495 0.91115 0.75835 1.90687 1.49498 1.52276 1.50059 1.45837 1.07130 1.08581 1.74254 1.22148 0.95891 0.81835 0.97875 0.88626 1.22903 0.94433 1.02301 0.97940 1.21682 0.94347 0.98900 0.86246 1.44844 1.07999 1.79131 1.01576 1.20020 0.93590 1.49157 0.82737 0.90701 1.25801 0.95972 0.98224 1.02217 1.70921 1.37870 1.32846 1.14376 0.83685 0.75372 0.76289 0.74137 1.22234 1.22831 1.22203 1.22029 0.88753 0.96541 0.93031 0.91782 0.91180 0.91854 0.93418 0.93510 0.93192 0.93347 0.90406 0.90255 0.88574 0.88906 0.76349 0.90754 0.90063 0.94294 0.95335 0.92741 0.95143 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.44 10.34 -35.23 -0.36 -4.81 16 4 C 0.06 0.61 5.94 37.16 0.22 0.83 16 5 C -0.10 -1.17 4.87 -26.73 -0.13 -1.30 16 6 C -0.14 -1.50 5.70 -27.88 -0.16 -1.66 16 7 C 0.51 7.72 7.83 -10.98 -0.09 7.63 16 8 O -0.55 -10.15 15.62 5.56 0.09 -10.06 16 9 N -0.71 -10.64 5.20 -51.61 -0.27 -10.91 16 10 C 0.13 2.14 3.43 -65.66 -0.23 1.91 16 11 H 0.10 1.55 7.54 -51.93 -0.39 1.16 16 12 C -0.14 -2.15 6.54 -24.89 -0.16 -2.31 16 13 C 0.11 2.36 4.93 -3.06 -0.02 2.34 16 14 N -0.61 -14.71 3.29 -169.93 -0.56 -15.27 16 15 C -0.33 -9.37 10.43 -15.06 -0.16 -9.53 16 16 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 17 C -0.02 -0.63 5.43 -17.43 -0.09 -0.73 16 18 N -0.92 -28.63 13.70 55.49 0.76 -27.87 16 19 Si 1.07 26.66 24.66 -169.99 -4.19 22.47 16 20 H -0.29 -6.80 6.76 56.52 0.38 -6.42 16 21 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 22 H -0.29 -7.04 6.71 56.52 0.38 -6.66 16 23 C 0.12 2.57 6.95 -2.40 -0.02 2.55 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 5.49 8.67 -40.82 -0.35 5.13 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.83 7.82 -51.93 -0.41 0.42 16 39 H 0.03 0.64 3.76 -51.93 -0.20 0.45 16 40 H 0.26 8.10 8.73 -40.82 -0.36 7.75 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -34.07 339.01 -6.93 -41.00 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.30 Total: 0.58 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.20 Total: -0.23 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.07 Total: -54.05 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.28 Total: -14.87 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -4.19 Total: 22.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.07 -6.93 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318235633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.549 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds