Wall clock time and date at job start Mon Mar 30 2020 01:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09001 * 110.74998 * 57.01991 * 4 3 2 6 6 C 1.55310 * 110.84735 * 180.71996 * 4 3 2 7 7 C 1.54938 * 100.94108 * 152.32342 * 6 4 3 8 8 O 1.43649 * 105.14083 * 323.55204 * 7 6 4 9 9 C 1.43241 * 109.96635 * 24.42840 * 8 7 6 10 10 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 11 11 O 1.21582 * 120.00123 * 180.02562 * 10 2 1 12 12 N 1.34779 * 119.99559 * 0.02562 * 10 2 1 13 13 C 1.46502 * 119.99726 * 179.97438 * 12 10 2 14 14 C 1.52998 * 109.47192 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47328 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46927 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00005 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99632 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99978 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46783 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46611 * 120.00532 * 20 18 16 23 23 H 1.48497 * 109.46974 * 240.00132 * 20 18 16 24 24 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 27 27 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 28 28 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 29 29 H 1.09004 * 111.12040 * 270.24237 * 6 4 3 30 30 H 1.08994 * 111.12415 * 34.39767 * 6 4 3 31 31 H 1.09001 * 110.31219 * 204.63611 * 7 6 4 32 32 H 1.09009 * 110.39545 * 82.51235 * 7 6 4 33 33 H 1.09000 * 109.82862 * 238.77496 * 9 8 7 34 34 H 1.09002 * 109.82741 * 117.80538 * 9 8 7 35 35 H 0.97001 * 119.99999 * 359.97438 * 12 10 2 36 36 H 1.09000 * 109.47166 * 300.00164 * 13 12 10 37 37 H 1.09004 * 109.47230 * 60.00115 * 13 12 10 38 38 H 1.09009 * 109.47056 * 299.99953 * 14 13 12 39 39 H 1.08998 * 109.47239 * 59.99505 * 14 13 12 40 40 H 1.08997 * 109.46411 * 299.99641 * 15 14 13 41 41 H 1.08990 * 109.47304 * 59.99563 * 15 14 13 42 42 H 0.97002 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 2.9957 0.9413 1.9916 6 6 3.2130 3.0640 1.4799 7 6 2.7300 3.6354 2.8367 8 8 1.3565 3.2292 2.9472 9 6 1.1269 2.0597 2.1526 10 6 2.1389 -1.1672 0.0005 11 8 3.3548 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0005 13 6 2.1975 -3.6031 0.0005 14 6 1.2033 -4.7661 -0.0001 15 6 1.9683 -6.0911 0.0005 16 6 0.9889 -7.2365 0.0005 17 1 -0.0728 -7.0391 0.0005 18 6 1.4486 -8.5364 0.0005 19 7 2.7416 -8.7767 0.0010 20 14 0.2346 -9.9563 0.0012 21 1 -1.1511 -9.4226 0.0011 22 1 0.4447 -10.7876 -1.2112 23 1 0.4456 -10.7872 1.2138 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 3.1499 1.1384 -0.5137 28 1 1.6085 2.0284 -0.5138 29 1 4.2919 2.9085 1.4808 30 1 2.9115 3.7070 0.6531 31 1 2.8040 4.7229 2.8372 32 1 3.3154 3.2166 3.6553 33 1 0.3529 2.2619 1.4122 34 1 0.8209 1.2321 2.7926 35 1 0.4950 -2.3344 0.0005 36 1 2.8242 -3.6609 -0.8894 37 1 2.8242 -3.6609 0.8905 38 1 0.5763 -4.7085 0.8897 39 1 0.5770 -4.7081 -0.8903 40 1 2.5955 -6.1488 -0.8890 41 1 2.5943 -6.1488 0.8908 42 1 3.0650 -9.6913 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319396178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:26 Heat of formation + Delta-G solvation = -88.521985 kcal Electronic energy + Delta-G solvation = -20647.423683 eV Core-core repulsion = 17434.144013 eV Total energy + Delta-G solvation = -3213.279670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41572 -39.36933 -36.11188 -35.25538 -33.51516 -32.73299 -31.07887 -29.71546 -27.62826 -26.91764 -25.13635 -23.05783 -22.56007 -21.13186 -20.64597 -19.57116 -17.91764 -17.06937 -16.55446 -16.49283 -16.05575 -15.47729 -15.00388 -14.57846 -14.37158 -14.29787 -14.02697 -13.64539 -13.25452 -13.22451 -12.75348 -12.46592 -12.24509 -12.04507 -11.78633 -11.72972 -11.60017 -11.17777 -11.00614 -10.92352 -10.71633 -10.57053 -10.07808 -9.86980 -9.81933 -9.45015 -9.11569 -8.99169 -8.55056 -8.37901 -6.02332 -4.05373 2.63624 3.28724 3.29521 3.37023 3.40459 3.59198 4.00108 4.18615 4.43840 4.46612 4.56090 4.79994 4.87834 4.93581 4.95539 5.12345 5.30468 5.33549 5.35965 5.42908 5.45489 5.51068 5.53374 5.65529 5.71335 5.80663 5.89554 6.17709 6.32909 6.52126 6.61519 6.68836 6.77128 6.97824 7.01638 7.63686 7.76225 7.96695 8.03254 8.37563 8.69686 9.01594 9.58862 11.09021 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.002750 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.570653 B =10180.489887 C =10310.774751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.638 5.638 3 C 0.147 3.853 4 C -0.141 4.141 5 H 0.091 0.909 6 C -0.149 4.149 7 C 0.051 3.949 8 O -0.388 6.388 9 C 0.059 3.941 10 C 0.702 3.298 11 O -0.590 6.590 12 N -0.741 5.741 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 24.768 1.356 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.376 5.376 3 C 0.023 3.977 4 C -0.161 4.161 5 H 0.110 0.890 6 C -0.187 4.187 7 C -0.025 4.025 8 O -0.308 6.308 9 C -0.018 4.018 10 C 0.403 3.597 11 O -0.468 6.468 12 N -0.396 5.396 13 C 0.010 3.990 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.035 24.681 1.466 24.910 hybrid contribution -0.969 -1.048 -0.078 1.430 sum -4.004 23.633 1.388 24.010 Atomic orbital electron populations 1.21794 0.79975 1.03117 1.01807 1.47033 1.06228 1.05027 1.79359 1.21227 0.98121 0.83695 0.94656 1.23220 0.96438 0.98089 0.98311 0.89018 1.23254 1.01466 0.95766 0.98210 1.23363 0.82757 0.99915 0.96487 1.88393 1.27378 1.45257 1.69726 1.23230 0.96937 0.87679 0.93926 1.15959 0.85396 0.80419 0.77948 1.90910 1.11572 1.86235 1.58064 1.45551 1.09881 1.05186 1.78983 1.21525 0.95167 0.80384 1.01886 1.21888 0.97851 0.95281 1.00786 1.19030 0.95488 0.89176 0.97698 1.21240 0.93017 0.90929 1.50789 0.92605 1.25037 0.95132 0.99046 0.95299 1.69978 1.12516 1.20123 1.50659 0.86526 0.81372 0.82428 0.77606 1.19769 1.21002 1.20993 0.92636 0.91172 0.90867 0.89217 0.90426 0.89511 0.90122 0.89755 0.92149 0.91313 0.91591 0.77107 0.91950 0.91951 0.92794 0.92801 0.96237 0.96238 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 8.98 59.85 0.54 1.10 16 2 N -0.64 -6.98 2.79 -187.35 -0.52 -7.50 16 3 C 0.15 1.37 4.84 -4.04 -0.02 1.35 16 4 C -0.14 -1.29 3.25 -88.67 -0.29 -1.58 16 5 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 6 C -0.15 -1.08 6.62 -24.48 -0.16 -1.24 16 7 C 0.05 0.41 7.78 38.18 0.30 0.70 16 8 O -0.39 -4.12 11.36 -35.23 -0.40 -4.52 16 9 C 0.06 0.54 6.37 37.88 0.24 0.78 16 10 C 0.70 10.75 8.28 -86.91 -0.72 10.03 16 11 O -0.59 -11.40 15.92 5.29 0.08 -11.32 16 12 N -0.74 -10.91 5.42 -65.22 -0.35 -11.26 16 13 C 0.13 2.39 5.67 -4.04 -0.02 2.37 16 14 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H 0.06 0.38 7.78 -51.93 -0.40 -0.03 16 25 H 0.07 0.49 6.36 -51.93 -0.33 0.16 16 26 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 27 H 0.09 0.99 7.42 -51.93 -0.39 0.60 16 28 H 0.08 0.53 7.82 -51.93 -0.41 0.12 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.49 8.04 -51.93 -0.42 0.07 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.07 0.54 7.06 -51.93 -0.37 0.17 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.39 4.71 6.20 -40.82 -0.25 4.45 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -33.63 340.43 -8.34 -41.97 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.16 Total: -0.96 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.83 Total: -1.86 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.14 Total: -44.88 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.32 Total: -15.84 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.63 -8.34 -41.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319396178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.549 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds