Wall clock time and date at job start Mon Mar 30 2020 01:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09001 * 110.74998 * 57.01991 * 4 3 2 6 6 C 1.55310 * 110.84735 * 180.71996 * 4 3 2 7 7 C 1.54938 * 100.94108 * 152.32342 * 6 4 3 8 8 O 1.43649 * 105.14083 * 323.55204 * 7 6 4 9 9 C 1.43241 * 109.96635 * 24.42840 * 8 7 6 10 10 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 11 11 O 1.21582 * 120.00123 * 180.02562 * 10 2 1 12 12 N 1.34779 * 119.99559 * 0.02562 * 10 2 1 13 13 C 1.46502 * 119.99726 * 179.97438 * 12 10 2 14 14 C 1.52998 * 109.47192 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47328 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46927 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00005 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99632 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99978 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46783 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46611 * 120.00532 * 20 18 16 23 23 H 1.48497 * 109.46974 * 240.00132 * 20 18 16 24 24 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 27 27 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 28 28 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 29 29 H 1.09004 * 111.12040 * 270.24237 * 6 4 3 30 30 H 1.08994 * 111.12415 * 34.39767 * 6 4 3 31 31 H 1.09001 * 110.31219 * 204.63611 * 7 6 4 32 32 H 1.09009 * 110.39545 * 82.51235 * 7 6 4 33 33 H 1.09000 * 109.82862 * 238.77496 * 9 8 7 34 34 H 1.09002 * 109.82741 * 117.80538 * 9 8 7 35 35 H 0.97001 * 119.99999 * 359.97438 * 12 10 2 36 36 H 1.09000 * 109.47166 * 300.00164 * 13 12 10 37 37 H 1.09004 * 109.47230 * 60.00115 * 13 12 10 38 38 H 1.09009 * 109.47056 * 299.99953 * 14 13 12 39 39 H 1.08998 * 109.47239 * 59.99505 * 14 13 12 40 40 H 1.08997 * 109.46411 * 299.99641 * 15 14 13 41 41 H 1.08990 * 109.47304 * 59.99563 * 15 14 13 42 42 H 0.97002 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 2.9957 0.9413 1.9916 6 6 3.2130 3.0640 1.4799 7 6 2.7300 3.6354 2.8367 8 8 1.3565 3.2292 2.9472 9 6 1.1269 2.0597 2.1526 10 6 2.1389 -1.1672 0.0005 11 8 3.3548 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0005 13 6 2.1975 -3.6031 0.0005 14 6 1.2033 -4.7661 -0.0001 15 6 1.9683 -6.0911 0.0005 16 6 0.9889 -7.2365 0.0005 17 1 -0.0728 -7.0391 0.0005 18 6 1.4486 -8.5364 0.0005 19 7 2.7416 -8.7767 0.0010 20 14 0.2346 -9.9563 0.0012 21 1 -1.1511 -9.4226 0.0011 22 1 0.4447 -10.7876 -1.2112 23 1 0.4456 -10.7872 1.2138 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 3.1499 1.1384 -0.5137 28 1 1.6085 2.0284 -0.5138 29 1 4.2919 2.9085 1.4808 30 1 2.9115 3.7070 0.6531 31 1 2.8040 4.7229 2.8372 32 1 3.3154 3.2166 3.6553 33 1 0.3529 2.2619 1.4122 34 1 0.8209 1.2321 2.7926 35 1 0.4950 -2.3344 0.0005 36 1 2.8242 -3.6609 -0.8894 37 1 2.8242 -3.6609 0.8905 38 1 0.5763 -4.7085 0.8897 39 1 0.5770 -4.7081 -0.8903 40 1 2.5955 -6.1488 -0.8890 41 1 2.5943 -6.1488 0.8908 42 1 3.0650 -9.6913 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319396178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:25 Heat of formation + Delta-G solvation = -111.519421 kcal Electronic energy + Delta-G solvation = -20648.420927 eV Core-core repulsion = 17434.144013 eV Total energy + Delta-G solvation = -3214.276914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42770 -40.21778 -37.28946 -36.60089 -35.25854 -33.80937 -32.69298 -30.44992 -28.64023 -28.30820 -26.28907 -24.63562 -23.32559 -22.31316 -21.92550 -20.76228 -18.98815 -18.49558 -17.78281 -17.36759 -17.27379 -16.62965 -16.48553 -15.80884 -15.61960 -15.43340 -15.20563 -14.36261 -14.29798 -14.24859 -13.96510 -13.74315 -13.46545 -13.35348 -13.10074 -12.78642 -12.69400 -12.52283 -12.33011 -12.26664 -11.86308 -11.72788 -11.67971 -11.59193 -11.26947 -11.10709 -10.56193 -10.52194 -10.23585 -9.55240 -8.19568 -6.31041 1.41953 1.42123 1.55287 1.62761 2.09851 2.41913 2.92282 2.99485 3.14351 3.51518 3.75255 3.88835 4.13411 4.18875 4.22091 4.23473 4.29012 4.35566 4.53631 4.55679 4.66351 4.72954 4.76189 4.86481 4.89138 4.92077 4.95153 4.96944 5.02356 5.16042 5.20218 5.46385 5.52390 5.55828 5.70756 5.84142 5.88267 6.01280 6.22452 6.86252 6.95218 7.38620 7.53086 8.92894 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.002750 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.570653 B =10180.489887 C =10310.774751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.629 5.629 3 C 0.145 3.855 4 C -0.138 4.138 5 H 0.058 0.942 6 C -0.141 4.141 7 C 0.046 3.954 8 O -0.409 6.409 9 C 0.061 3.939 10 C 0.695 3.305 11 O -0.638 6.638 12 N -0.731 5.731 13 C 0.149 3.851 14 C -0.100 4.100 15 C 0.024 3.976 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.258 1.258 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.068 0.932 40 H -0.008 1.008 41 H -0.009 1.009 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 26.190 0.896 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.366 5.366 3 C 0.022 3.978 4 C -0.158 4.158 5 H 0.076 0.924 6 C -0.179 4.179 7 C -0.030 4.030 8 O -0.329 6.329 9 C -0.015 4.015 10 C 0.396 3.604 11 O -0.519 6.519 12 N -0.388 5.388 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.248 0.752 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.011 0.989 41 H 0.010 0.990 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.707 26.153 1.009 26.788 hybrid contribution -0.132 -1.418 0.085 1.427 sum -5.840 24.735 1.094 25.438 Atomic orbital electron populations 1.22108 0.77325 1.04988 1.03060 1.47092 1.07845 1.03955 1.77674 1.21392 0.97937 0.83641 0.94796 1.23098 0.96706 0.98210 0.97792 0.92387 1.23253 1.01412 0.94704 0.98578 1.23521 0.81693 1.01116 0.96689 1.88367 1.28664 1.45587 1.70289 1.23247 0.97133 0.87135 0.93989 1.16177 0.84948 0.81485 0.77767 1.90877 1.13871 1.87061 1.60133 1.45208 1.10506 1.04049 1.79057 1.21071 0.94596 0.81562 1.00344 1.21582 0.97455 0.92626 1.02085 1.18942 0.95181 0.92229 0.95071 1.21707 0.93885 0.91826 1.50279 0.91461 1.26041 0.97030 1.02331 0.94811 1.70124 1.14796 1.20921 1.51801 0.85353 0.79321 0.78479 0.77604 1.18118 1.20576 1.20624 0.91641 0.90620 0.87790 0.91191 0.86697 0.89289 0.88089 0.87798 0.92658 0.89177 0.92751 0.75175 0.93537 0.93739 0.91446 0.91284 0.98924 0.99023 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 8.98 127.77 1.15 1.92 16 2 N -0.63 -12.70 2.79 -864.91 -2.41 -15.11 16 3 C 0.15 2.46 4.84 86.38 0.42 2.88 16 4 C -0.14 -2.41 3.25 -9.53 -0.03 -2.44 16 5 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.14 -1.82 6.62 32.05 0.21 -1.61 16 7 C 0.05 0.66 7.78 72.64 0.56 1.23 16 8 O -0.41 -8.06 11.36 -148.98 -1.69 -9.75 16 9 C 0.06 1.01 6.37 72.45 0.46 1.48 16 10 C 0.70 21.13 8.28 179.05 1.48 22.61 16 11 O -0.64 -25.43 15.92 -3.97 -0.06 -25.50 16 12 N -0.73 -21.01 5.42 -478.53 -2.59 -23.61 16 13 C 0.15 5.43 5.67 86.38 0.49 5.92 16 14 C -0.10 -3.86 5.27 30.59 0.16 -3.69 16 15 C 0.02 1.23 4.97 29.85 0.15 1.38 16 16 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 19 N -0.94 -57.43 13.29 21.45 0.28 -57.15 16 20 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H 0.07 0.67 7.78 -2.39 -0.02 0.66 16 25 H 0.08 0.81 6.36 -2.39 -0.02 0.80 16 26 H 0.10 0.62 7.89 -2.38 -0.02 0.60 16 27 H 0.07 1.50 7.42 -2.39 -0.02 1.49 16 28 H 0.12 1.12 7.82 -2.39 -0.02 1.10 16 29 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.10 0.91 8.04 -2.39 -0.02 0.90 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 1.10 7.06 -2.39 -0.02 1.08 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.41 8.96 6.20 -92.71 -0.58 8.39 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -74.94 340.43 1.71 -73.23 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.41 Total: 12.05 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.75 Total: 0.01 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -4.72 Total: -95.86 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.76 Total: -35.24 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -74.94 1.71 -73.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319396178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.290 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds