Wall clock time and date at job start Mon Mar 30 2020 00:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46892 * 2 1 4 4 C 1.46502 * 119.99737 * 275.64038 * 3 2 1 5 5 C 1.53007 * 109.46959 * 269.99999 * 4 3 2 6 6 N 1.46501 * 109.46869 * 180.02562 * 5 4 3 7 7 C 1.36932 * 119.99478 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00638 * 359.97438 * 7 6 5 9 9 C 1.38822 * 119.99707 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99971 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99716 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47271 * 90.00153 * 11 9 7 13 13 H 1.48504 * 109.46798 * 209.99813 * 11 9 7 14 14 H 1.48498 * 109.47416 * 329.99742 * 11 9 7 15 15 C 1.34771 * 120.00076 * 95.64168 * 3 2 1 16 16 O 1.21275 * 120.00376 * 184.77294 * 15 3 2 17 17 C 1.50708 * 119.99925 * 4.77122 * 15 3 2 18 18 H 1.09003 * 109.46652 * 36.53942 * 17 15 3 19 19 O 1.42897 * 109.47185 * 156.53825 * 17 15 3 20 20 C 1.42901 * 114.00010 * 270.00258 * 19 17 15 21 21 C 1.52999 * 109.47147 * 276.54038 * 17 15 3 22 22 C 1.52997 * 117.49626 * 242.78760 * 21 17 15 23 23 C 1.52998 * 117.49710 * 174.13036 * 21 17 15 24 24 H 1.09000 * 109.47308 * 67.48045 * 1 2 3 25 25 H 1.09001 * 109.47290 * 187.47778 * 1 2 3 26 26 H 1.09002 * 109.46668 * 307.47878 * 1 2 3 27 27 H 1.08995 * 109.46869 * 240.00291 * 2 1 3 28 28 H 1.08996 * 109.47206 * 120.00398 * 2 1 3 29 29 H 1.08989 * 109.47423 * 30.00134 * 4 3 2 30 30 H 1.09002 * 109.46761 * 150.00327 * 4 3 2 31 31 H 1.08998 * 109.46939 * 300.00437 * 5 4 3 32 32 H 1.09000 * 109.47105 * 60.00010 * 5 4 3 33 33 H 0.97003 * 119.99815 * 359.97438 * 6 5 4 34 34 H 0.96999 * 119.99556 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47131 * 299.99568 * 20 19 17 36 36 H 1.08998 * 109.47455 * 179.97438 * 20 19 17 37 37 H 1.09003 * 109.47607 * 59.99795 * 20 19 17 38 38 H 1.08998 * 115.55008 * 28.46034 * 21 17 15 39 39 H 1.09000 * 117.49892 * 0.02562 * 22 21 17 40 40 H 1.09006 * 117.49638 * 145.02090 * 22 21 17 41 41 H 1.09005 * 117.49544 * 214.97767 * 23 21 17 42 42 H 1.09002 * 117.49866 * 359.96853 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1449 2.1134 -1.2626 5 6 3.5425 1.8898 -1.8439 6 7 3.6692 2.6224 -3.1063 7 6 4.8409 2.5709 -3.8130 8 1 5.6717 1.9905 -3.4398 9 6 4.9608 3.2646 -5.0095 10 7 6.0872 3.2155 -5.6886 11 14 3.5241 4.2690 -5.6547 12 1 3.6135 5.6551 -5.1292 13 1 3.5678 4.2986 -7.1388 14 1 2.2490 3.6519 -5.2092 15 6 2.3511 1.9784 1.1615 16 8 2.6724 3.1477 1.1720 17 6 2.3239 1.1929 2.4474 18 1 2.6577 0.1729 2.2571 19 8 3.1929 1.8086 3.4002 20 6 4.5366 1.3240 3.3596 21 6 0.8973 1.1680 2.9997 22 6 0.6544 1.8272 4.3589 23 6 0.6322 0.3018 4.2327 24 1 -0.3634 0.3936 -0.9493 25 1 -0.3634 -1.0189 0.1337 26 1 -0.3633 0.6253 0.8156 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3961 1.7534 -1.9680 30 1 1.9923 3.1776 -1.0824 31 1 4.2912 2.2498 -1.1385 32 1 3.6950 0.8257 -2.0241 33 1 2.9228 3.1434 -3.4417 34 1 6.1711 3.7006 -6.5244 35 1 4.5429 0.2533 3.5635 36 1 5.1322 1.8409 4.1119 37 1 4.9597 1.5083 2.3721 38 1 0.1039 1.2411 2.2559 39 1 1.5109 2.2789 4.8594 40 1 -0.2990 2.3336 4.5094 41 1 -0.3359 -0.1946 4.3003 42 1 1.4740 -0.2507 4.6501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320725183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:20 Heat of formation + Delta-G solvation = -54.013176 kcal Electronic energy + Delta-G solvation = -21600.887864 eV Core-core repulsion = 18389.104607 eV Total energy + Delta-G solvation = -3211.783256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.55618 -39.15134 -37.64755 -37.06327 -36.45068 -33.84747 -31.84961 -30.69610 -28.96671 -27.21145 -25.35818 -24.33616 -23.35892 -23.16823 -22.04801 -20.38480 -19.58122 -18.62907 -17.99874 -17.39957 -16.86621 -16.41087 -16.23384 -15.76651 -15.68157 -15.30278 -15.13549 -14.82406 -14.78352 -14.35454 -14.10844 -13.72090 -13.47466 -13.04592 -12.90072 -12.83290 -12.61679 -12.43333 -12.26517 -12.16106 -12.12383 -11.97737 -11.86145 -11.67182 -11.30664 -11.07199 -11.05696 -10.26768 -9.78932 -9.41032 -8.08572 -5.44663 1.34616 1.40222 1.45398 1.46906 1.77422 2.44380 2.59665 2.97146 3.22449 3.33435 3.66849 3.75540 3.78410 3.97288 4.07677 4.09620 4.17399 4.23015 4.34355 4.40269 4.44824 4.47504 4.51440 4.61098 4.76974 4.85802 4.86965 4.93449 4.97655 5.02469 5.05404 5.20856 5.37215 5.44164 5.51479 5.67257 5.92912 6.14261 6.35506 6.99259 7.09606 7.72661 7.93948 9.12705 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.004237 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.786230 B = 6607.203055 C = 7030.216477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 N -0.601 5.601 4 C 0.115 3.885 5 C 0.151 3.849 6 N -0.755 5.755 7 C -0.244 4.244 8 H 0.053 0.947 9 C -0.060 4.060 10 N -0.981 5.981 11 Si 0.958 3.042 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.246 1.246 15 C 0.485 3.515 16 O -0.575 6.575 17 C 0.110 3.890 18 H 0.114 0.886 19 O -0.376 6.376 20 C 0.022 3.978 21 C -0.175 4.175 22 C -0.175 4.175 23 C -0.138 4.138 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.000 1.000 32 H 0.037 0.963 33 H 0.368 0.632 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.022 0.978 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 -11.988 21.019 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.031 4.031 3 N -0.336 5.336 4 C -0.008 4.008 5 C 0.024 3.976 6 N -0.401 5.401 7 C -0.375 4.375 8 H 0.071 0.929 9 C -0.252 4.252 10 N -0.631 5.631 11 Si 0.784 3.216 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.170 1.170 15 C 0.273 3.727 16 O -0.454 6.454 17 C 0.049 3.951 18 H 0.132 0.868 19 O -0.294 6.294 20 C -0.074 4.074 21 C -0.193 4.193 22 C -0.212 4.212 23 C -0.175 4.175 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.202 0.798 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.040 0.960 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.839 -11.324 21.144 28.743 hybrid contribution 0.257 0.950 -1.200 1.552 sum -15.582 -10.374 19.943 27.352 Atomic orbital electron populations 1.22293 0.94037 1.04011 1.02317 1.22038 0.96017 0.80016 1.05007 1.48107 1.64565 1.15759 1.05127 1.21395 0.96488 0.97516 0.85431 1.20936 0.95600 0.95142 0.85925 1.42513 1.13765 1.59980 1.23886 1.18979 0.91558 1.25031 1.01913 0.92909 1.25556 1.00098 1.01811 0.97695 1.69885 1.27478 1.48193 1.17532 0.85371 0.80135 0.78795 0.77284 1.20816 1.21459 1.16974 1.22063 0.76097 0.87842 0.86690 1.90698 1.48727 1.18765 1.87191 1.21643 0.92497 0.95767 0.85184 0.86842 1.87975 1.20859 1.65609 1.54934 1.23045 0.82305 1.00596 1.01500 1.22384 0.93519 1.10062 0.93329 1.22911 1.03144 0.96882 0.98242 1.23083 1.04405 0.92660 0.97359 0.92872 0.88570 0.92168 0.89367 0.87834 0.87896 0.91878 0.98229 0.94536 0.79833 0.93054 0.90740 0.88032 0.95951 0.85584 0.89165 0.88115 0.86136 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.18 71.98 0.73 -1.32 16 2 C 0.09 1.44 5.90 86.38 0.51 1.95 16 3 N -0.60 -15.77 2.47 -821.80 -2.03 -17.80 16 4 C 0.12 3.74 5.58 86.38 0.48 4.22 16 5 C 0.15 6.27 6.58 86.38 0.57 6.84 16 6 N -0.75 -37.52 5.41 -343.44 -1.86 -39.37 16 7 C -0.24 -14.64 10.47 84.04 0.88 -13.76 16 8 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 9 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 10 N -0.98 -64.27 13.97 21.65 0.30 -63.97 16 11 Si 0.96 46.40 27.74 68.60 1.90 48.31 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 14 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 15 C 0.48 14.76 6.81 87.66 0.60 15.35 16 16 O -0.58 -24.11 16.21 14.88 0.24 -23.87 16 17 C 0.11 2.38 2.06 29.85 0.06 2.45 16 18 H 0.11 1.75 5.93 -2.39 -0.01 1.74 16 19 O -0.38 -9.51 8.35 -131.08 -1.09 -10.61 16 20 C 0.02 0.44 10.81 113.37 1.23 1.66 16 21 C -0.17 -2.94 5.44 -10.80 -0.06 -3.00 16 22 C -0.17 -2.97 9.87 30.62 0.30 -2.67 16 23 C -0.14 -1.53 10.25 30.62 0.31 -1.22 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.76 5.27 -2.39 -0.01 0.75 16 27 H 0.09 1.39 8.11 -2.39 -0.02 1.37 16 28 H 0.10 1.16 5.66 -2.39 -0.01 1.14 16 29 H 0.10 2.80 8.07 -2.39 -0.02 2.78 16 30 H 0.06 2.34 7.36 -2.39 -0.02 2.32 16 31 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.37 17.14 5.53 -92.71 -0.51 16.63 16 34 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 35 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.13 1.98 5.18 -2.39 -0.01 1.97 16 39 H 0.09 1.88 7.02 -2.39 -0.02 1.86 16 40 H 0.10 1.50 8.14 -2.38 -0.02 1.49 16 41 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -81.08 340.21 3.98 -77.10 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.44 Total: 22.86 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 6.08 Total: 7.35 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -3.59 Total: -121.14 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.85 Total: -34.48 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.31 kcal Total: -81.08 3.98 -77.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320725183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.088 kcal (2) G-P(sol) polarization free energy of solvation -81.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds