Wall clock time and date at job start Mon Mar 30 2020 00:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47351 * 2 1 4 4 C 1.46504 * 120.00113 * 270.52563 * 3 2 1 5 5 C 1.52993 * 109.47153 * 269.99774 * 4 3 2 6 6 N 1.46497 * 109.47502 * 179.97438 * 5 4 3 7 7 C 1.36932 * 120.00278 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00188 * 0.02562 * 7 6 5 9 9 C 1.38816 * 120.00100 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00052 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47264 * 90.00048 * 11 9 7 13 13 H 1.48502 * 109.47102 * 209.99863 * 11 9 7 14 14 H 1.48504 * 109.47054 * 329.99812 * 11 9 7 15 15 C 1.34780 * 120.00082 * 90.51850 * 3 2 1 16 16 O 1.21277 * 119.99866 * 184.48863 * 15 3 2 17 17 C 1.50693 * 119.99692 * 4.49501 * 15 3 2 18 18 H 1.09000 * 110.33275 * 307.18258 * 17 15 3 19 19 C 1.54483 * 110.37748 * 69.43367 * 17 15 3 20 20 C 1.54511 * 104.06399 * 142.91838 * 19 17 15 21 21 H 1.08991 * 110.50816 * 241.22153 * 20 19 17 22 22 C 1.52994 * 110.50923 * 118.64588 * 20 19 17 23 23 C 1.54486 * 104.06079 * 0.02562 * 20 19 17 24 24 O 1.44422 * 110.46563 * 184.87380 * 17 15 3 25 25 H 1.08994 * 109.47091 * 59.99629 * 1 2 3 26 26 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46816 * 299.99583 * 1 2 3 28 28 H 1.09004 * 109.46816 * 240.00417 * 2 1 3 29 29 H 1.08996 * 109.47553 * 120.00145 * 2 1 3 30 30 H 1.09005 * 109.46785 * 29.99471 * 4 3 2 31 31 H 1.08996 * 109.47179 * 149.99406 * 4 3 2 32 32 H 1.09005 * 109.47348 * 300.00259 * 5 4 3 33 33 H 1.09009 * 109.47460 * 59.99483 * 5 4 3 34 34 H 0.96996 * 119.99904 * 0.02562 * 6 5 4 35 35 H 0.97000 * 119.99743 * 179.97438 * 10 9 7 36 36 H 1.09002 * 110.50563 * 24.27538 * 19 17 15 37 37 H 1.08996 * 110.62640 * 261.62422 * 19 17 15 38 38 H 1.09002 * 109.47387 * 60.00196 * 22 20 19 39 39 H 1.09006 * 109.47608 * 299.99885 * 22 20 19 40 40 H 1.08995 * 109.47184 * 180.02562 * 22 20 19 41 41 H 1.08994 * 110.36956 * 94.85444 * 23 20 19 42 42 H 1.09002 * 110.36499 * 217.18863 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2517 2.0757 -1.2687 5 6 3.6927 1.8367 -1.7235 6 7 3.9258 2.5306 -2.9925 7 6 5.1530 2.4603 -3.5960 8 1 5.9490 1.8928 -3.1368 9 6 5.3740 3.1183 -4.7982 10 7 4.4039 3.8094 -5.3581 11 14 7.0478 3.0217 -5.6218 12 1 7.0811 1.8551 -6.5401 13 1 7.2921 4.2665 -6.3939 14 1 8.1009 2.8667 -4.5863 15 6 2.2530 2.0130 1.1672 16 8 2.5789 3.1812 1.1695 17 6 2.1105 1.2679 2.4692 18 1 1.1334 0.7883 2.5261 19 6 3.2342 0.2176 2.6137 20 6 3.5853 0.2480 4.1180 21 1 4.6249 0.5422 4.2616 22 6 3.3226 -1.1169 4.7574 23 6 2.6318 1.3125 4.7046 24 8 2.2968 2.1636 3.5867 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.5643 1.6938 -2.0236 31 1 2.0858 3.1445 -1.1337 32 1 4.3801 2.2184 -0.9686 33 1 3.8586 0.7678 -1.8585 34 1 3.2112 3.0406 -3.4048 35 1 4.5585 4.2695 -6.1980 36 1 4.0996 0.4993 2.0137 37 1 2.8757 -0.7704 2.3249 38 1 3.9357 -1.8724 4.2661 39 1 2.2694 -1.3743 4.6449 40 1 3.5751 -1.0765 5.8169 41 1 1.7349 0.8395 5.1043 42 1 3.1367 1.8875 5.4809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320801957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:02 Heat of formation + Delta-G solvation = -70.019590 kcal Electronic energy + Delta-G solvation = -21460.366243 eV Core-core repulsion = 18247.888897 eV Total energy + Delta-G solvation = -3212.477346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61399 -38.75223 -36.16588 -34.61236 -33.80218 -31.91277 -30.51278 -30.26418 -27.47998 -26.54731 -24.47024 -23.71228 -22.79366 -21.43545 -20.78334 -19.16522 -17.42575 -17.12097 -16.60671 -16.03756 -15.49128 -15.20171 -14.77688 -14.36019 -14.17322 -13.98071 -13.63808 -13.44685 -13.30171 -13.17321 -12.93445 -12.71875 -12.62660 -11.97968 -11.90130 -11.51950 -11.31822 -11.22309 -11.10572 -10.95408 -10.90599 -10.80721 -10.64749 -10.12852 -10.08643 -9.73935 -9.45054 -8.84963 -8.51088 -6.90843 -5.73655 -3.02887 2.68829 2.83240 3.45984 3.50972 3.53288 3.80798 4.13229 4.37622 4.47875 4.63405 4.64560 4.77545 4.84427 4.93377 5.07175 5.12656 5.19680 5.25765 5.35016 5.42994 5.46267 5.54052 5.59901 5.64712 5.67596 5.70680 5.75278 5.84637 5.88811 6.03474 6.07591 6.17412 6.44864 6.61679 6.77312 6.93381 7.50379 7.72389 8.31639 8.44903 9.55709 10.12013 10.47160 11.49309 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.003941 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.886716 B = 7102.228864 C = 7476.606724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 N -0.605 5.605 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.516 3.484 16 O -0.512 6.512 17 C 0.060 3.940 18 H 0.091 0.909 19 C -0.142 4.142 20 C -0.127 4.127 21 H 0.087 0.913 22 C -0.143 4.143 23 C 0.045 3.955 24 O -0.344 6.344 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.174 -13.336 19.743 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.028 4.028 3 N -0.340 5.340 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.302 3.698 16 O -0.386 6.386 17 C -0.001 4.001 18 H 0.108 0.892 19 C -0.180 4.180 20 C -0.146 4.146 21 H 0.106 0.894 22 C -0.201 4.201 23 C -0.032 4.032 24 O -0.262 6.262 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.841 -12.481 19.715 24.616 hybrid contribution 0.672 -0.177 -0.684 0.975 sum -7.169 -12.658 19.031 23.954 Atomic orbital electron populations 1.22232 0.95865 1.02224 1.02759 1.21762 0.94465 0.82788 1.03811 1.47835 1.65967 1.14294 1.05919 1.21706 0.98190 0.98514 0.82959 1.20905 0.92806 0.95468 0.89348 1.42206 1.13161 1.60593 1.21534 1.19205 0.89494 1.25989 1.02258 0.91219 1.24748 0.97847 1.00288 0.98077 1.69663 1.31479 1.37229 1.19815 0.86162 0.83616 0.76965 0.79296 1.21713 1.21705 1.20750 1.20147 0.77746 0.87274 0.84614 1.90755 1.45159 1.15926 1.86741 1.22862 0.99685 0.90326 0.87255 0.89180 1.23071 0.98970 0.98950 0.97037 1.22551 1.01271 0.96358 0.94372 0.89413 1.21823 1.01912 0.95599 1.00743 1.23595 0.97431 0.91984 0.90142 1.89293 1.90648 1.28708 1.17551 0.91790 0.91415 0.92664 0.89546 0.90300 0.90354 0.89605 0.96083 0.96426 0.78237 0.93480 0.89727 0.89279 0.91999 0.92321 0.92203 0.91944 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.20 37.16 0.38 -1.08 16 2 C 0.09 0.95 5.79 -4.04 -0.02 0.92 16 3 N -0.60 -8.78 2.47 -173.69 -0.43 -9.21 16 4 C 0.11 1.92 5.56 -4.04 -0.02 1.90 16 5 C 0.14 3.09 6.58 -4.05 -0.03 3.06 16 6 N -0.73 -19.41 5.60 -59.91 -0.34 -19.75 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 11 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 15 C 0.52 8.43 6.94 -10.99 -0.08 8.35 16 16 O -0.51 -11.04 16.12 -13.55 -0.22 -11.25 16 17 C 0.06 0.73 2.76 -27.11 -0.07 0.66 16 18 H 0.09 0.87 7.12 -51.93 -0.37 0.50 16 19 C -0.14 -1.37 5.36 -25.16 -0.13 -1.50 16 20 C -0.13 -1.03 3.72 -89.05 -0.33 -1.36 16 21 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.14 -0.81 8.96 37.15 0.33 -0.48 16 23 C 0.05 0.42 7.18 37.94 0.27 0.69 16 24 O -0.34 -4.87 10.92 -54.34 -0.59 -5.47 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.47 7.53 -51.93 -0.39 0.08 16 28 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.08 0.62 4.45 -51.93 -0.23 0.38 16 30 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.09 1.72 7.36 -51.93 -0.38 1.34 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.38 10.59 7.67 -40.82 -0.31 10.28 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 37 H 0.09 0.62 6.21 -51.93 -0.32 0.30 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.45 7.82 -51.93 -0.41 0.05 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -35.69 339.14 -7.73 -43.42 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.01 Total: 3.83 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 0.05 Total: 3.58 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.04 Total: -57.12 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.81 Total: -16.72 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.69 -7.73 -43.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320801957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.598 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds