Wall clock time and date at job start Mon Mar 30 2020 00:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47351 * 2 1 4 4 C 1.46504 * 120.00113 * 270.52563 * 3 2 1 5 5 C 1.52993 * 109.47153 * 269.99774 * 4 3 2 6 6 N 1.46497 * 109.47502 * 179.97438 * 5 4 3 7 7 C 1.36932 * 120.00278 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00188 * 0.02562 * 7 6 5 9 9 C 1.38816 * 120.00100 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00052 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47264 * 90.00048 * 11 9 7 13 13 H 1.48502 * 109.47102 * 209.99863 * 11 9 7 14 14 H 1.48504 * 109.47054 * 329.99812 * 11 9 7 15 15 C 1.34780 * 120.00082 * 90.51850 * 3 2 1 16 16 O 1.21277 * 119.99866 * 184.48863 * 15 3 2 17 17 C 1.50693 * 119.99692 * 4.49501 * 15 3 2 18 18 H 1.09000 * 110.33275 * 307.18258 * 17 15 3 19 19 C 1.54483 * 110.37748 * 69.43367 * 17 15 3 20 20 C 1.54511 * 104.06399 * 142.91838 * 19 17 15 21 21 H 1.08991 * 110.50816 * 241.22153 * 20 19 17 22 22 C 1.52994 * 110.50923 * 118.64588 * 20 19 17 23 23 C 1.54486 * 104.06079 * 0.02562 * 20 19 17 24 24 O 1.44422 * 110.46563 * 184.87380 * 17 15 3 25 25 H 1.08994 * 109.47091 * 59.99629 * 1 2 3 26 26 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46816 * 299.99583 * 1 2 3 28 28 H 1.09004 * 109.46816 * 240.00417 * 2 1 3 29 29 H 1.08996 * 109.47553 * 120.00145 * 2 1 3 30 30 H 1.09005 * 109.46785 * 29.99471 * 4 3 2 31 31 H 1.08996 * 109.47179 * 149.99406 * 4 3 2 32 32 H 1.09005 * 109.47348 * 300.00259 * 5 4 3 33 33 H 1.09009 * 109.47460 * 59.99483 * 5 4 3 34 34 H 0.96996 * 119.99904 * 0.02562 * 6 5 4 35 35 H 0.97000 * 119.99743 * 179.97438 * 10 9 7 36 36 H 1.09002 * 110.50563 * 24.27538 * 19 17 15 37 37 H 1.08996 * 110.62640 * 261.62422 * 19 17 15 38 38 H 1.09002 * 109.47387 * 60.00196 * 22 20 19 39 39 H 1.09006 * 109.47608 * 299.99885 * 22 20 19 40 40 H 1.08995 * 109.47184 * 180.02562 * 22 20 19 41 41 H 1.08994 * 110.36956 * 94.85444 * 23 20 19 42 42 H 1.09002 * 110.36499 * 217.18863 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2517 2.0757 -1.2687 5 6 3.6927 1.8367 -1.7235 6 7 3.9258 2.5306 -2.9925 7 6 5.1530 2.4603 -3.5960 8 1 5.9490 1.8928 -3.1368 9 6 5.3740 3.1183 -4.7982 10 7 4.4039 3.8094 -5.3581 11 14 7.0478 3.0217 -5.6218 12 1 7.0811 1.8551 -6.5401 13 1 7.2921 4.2665 -6.3939 14 1 8.1009 2.8667 -4.5863 15 6 2.2530 2.0130 1.1672 16 8 2.5789 3.1812 1.1695 17 6 2.1105 1.2679 2.4692 18 1 1.1334 0.7883 2.5261 19 6 3.2342 0.2176 2.6137 20 6 3.5853 0.2480 4.1180 21 1 4.6249 0.5422 4.2616 22 6 3.3226 -1.1169 4.7574 23 6 2.6318 1.3125 4.7046 24 8 2.2968 2.1636 3.5867 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.5643 1.6938 -2.0236 31 1 2.0858 3.1445 -1.1337 32 1 4.3801 2.2184 -0.9686 33 1 3.8586 0.7678 -1.8585 34 1 3.2112 3.0406 -3.4048 35 1 4.5585 4.2695 -6.1980 36 1 4.0996 0.4993 2.0137 37 1 2.8757 -0.7704 2.3249 38 1 3.9357 -1.8724 4.2661 39 1 2.2694 -1.3743 4.6449 40 1 3.5751 -1.0765 5.8169 41 1 1.7349 0.8395 5.1043 42 1 3.1367 1.8875 5.4809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320801957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:02 Heat of formation + Delta-G solvation = -94.699906 kcal Electronic energy + Delta-G solvation = -21461.436462 eV Core-core repulsion = 18247.888897 eV Total energy + Delta-G solvation = -3213.547565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67669 -39.79946 -37.57051 -36.43762 -34.54000 -33.72158 -31.72576 -31.38230 -29.04011 -27.14415 -25.97883 -24.95495 -23.99465 -23.03951 -21.46528 -20.38824 -19.22562 -18.38335 -17.77882 -17.05549 -16.81981 -16.32066 -16.07191 -15.85548 -15.24620 -15.19318 -14.98128 -14.83619 -14.80930 -14.27793 -13.87199 -13.75481 -13.23775 -13.11112 -12.93097 -12.81135 -12.73755 -12.68673 -12.36135 -12.17055 -12.14095 -11.99743 -11.88845 -11.74395 -11.51719 -11.03038 -10.99605 -10.66648 -9.79594 -9.09512 -7.99645 -5.30982 1.44193 1.46117 1.48165 1.56512 1.69651 2.53717 2.95384 3.27619 3.33756 3.55350 3.78655 3.87163 3.97238 4.04311 4.12625 4.13288 4.17342 4.25603 4.41613 4.50073 4.52855 4.53692 4.66643 4.75295 4.82100 4.85909 4.88138 4.94293 5.02785 5.06530 5.12367 5.24367 5.36762 5.38990 5.41102 5.50558 5.73729 6.21549 6.33655 7.07825 7.27657 7.98688 8.24408 9.23830 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.003941 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.886716 B = 7102.228864 C = 7476.606724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.598 5.598 4 C 0.122 3.878 5 C 0.151 3.849 6 N -0.743 5.743 7 C -0.253 4.253 8 H 0.074 0.926 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.279 1.279 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.506 3.494 16 O -0.580 6.580 17 C 0.065 3.935 18 H 0.126 0.874 19 C -0.139 4.139 20 C -0.122 4.122 21 H 0.077 0.923 22 C -0.138 4.138 23 C 0.039 3.961 24 O -0.388 6.388 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.055 0.945 32 H -0.005 1.005 33 H 0.036 0.964 34 H 0.375 0.625 35 H 0.254 0.746 36 H 0.057 0.943 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.487 -16.416 20.909 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.034 4.034 3 N -0.332 5.332 4 C -0.001 4.001 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.385 4.385 8 H 0.092 0.908 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.220 1.220 14 H -0.197 1.197 15 C 0.295 3.705 16 O -0.459 6.459 17 C 0.005 3.995 18 H 0.143 0.857 19 C -0.177 4.177 20 C -0.141 4.141 21 H 0.096 0.904 22 C -0.195 4.195 23 C -0.037 4.037 24 O -0.307 6.307 25 H 0.067 0.933 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.013 0.987 33 H 0.054 0.946 34 H 0.207 0.793 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.170 -15.641 20.917 27.366 hybrid contribution 0.750 0.766 -0.985 1.456 sum -7.419 -14.875 19.932 25.954 Atomic orbital electron populations 1.22207 0.94275 1.04011 1.02124 1.22159 0.95729 0.79981 1.05542 1.47927 1.65108 1.15902 1.04250 1.21326 0.96194 0.97490 0.85133 1.20937 0.94626 0.95428 0.86702 1.42398 1.12374 1.61000 1.22911 1.19597 0.90480 1.25795 1.02586 0.90837 1.25645 1.01787 1.00205 0.98853 1.69823 1.33602 1.38234 1.20150 0.85066 0.79092 0.76894 0.78229 1.20580 1.21952 1.19701 1.21115 0.76213 0.86801 0.86408 1.90715 1.48331 1.19001 1.87805 1.22991 1.02257 0.89853 0.84440 0.85711 1.23120 0.97153 0.99588 0.97843 1.22534 1.00490 0.97727 0.93366 0.90423 1.21802 1.02983 0.93658 1.01037 1.23872 0.98880 0.91960 0.88983 1.89259 1.91098 1.31130 1.19226 0.93302 0.88333 0.92520 0.89012 0.87394 0.88370 0.92678 0.98664 0.94645 0.79269 0.93738 0.92388 0.85742 0.91421 0.90868 0.91336 0.89354 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.20 71.98 0.73 -1.59 16 2 C 0.09 1.49 5.79 86.38 0.50 1.99 16 3 N -0.60 -17.13 2.47 -821.82 -2.03 -19.16 16 4 C 0.12 4.44 5.56 86.38 0.48 4.92 16 5 C 0.15 6.64 6.58 86.38 0.57 7.21 16 6 N -0.74 -40.50 5.60 -343.45 -1.92 -42.42 16 7 C -0.25 -14.89 9.99 84.04 0.84 -14.05 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 10 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 11 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.51 16.80 6.94 87.65 0.61 17.41 16 16 O -0.58 -26.54 16.12 15.25 0.25 -26.29 16 17 C 0.07 1.50 2.76 30.35 0.08 1.58 16 18 H 0.13 1.97 7.12 -2.39 -0.02 1.95 16 19 C -0.14 -2.37 5.36 31.61 0.17 -2.20 16 20 C -0.12 -1.72 3.72 -9.78 -0.04 -1.76 16 21 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 22 C -0.14 -1.03 8.96 71.98 0.65 -0.39 16 23 C 0.04 0.65 7.18 72.49 0.52 1.17 16 24 O -0.39 -10.88 10.92 -130.71 -1.43 -12.31 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.78 7.53 -2.38 -0.02 0.77 16 28 H 0.09 1.54 8.08 -2.38 -0.02 1.52 16 29 H 0.11 1.23 4.45 -2.39 -0.01 1.22 16 30 H 0.10 3.16 8.07 -2.38 -0.02 3.14 16 31 H 0.05 2.35 7.36 -2.39 -0.02 2.33 16 32 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 33 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.38 21.42 7.67 -92.71 -0.71 20.71 16 35 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.06 1.31 7.87 -2.39 -0.02 1.29 16 37 H 0.12 1.18 6.21 -2.39 -0.01 1.17 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.07 0.37 8.08 -2.38 -0.02 0.35 16 40 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.09 1.00 7.82 -2.39 -0.02 0.98 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -81.17 339.14 3.04 -78.13 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.29 Total: 22.91 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 5.58 Total: 10.45 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -3.67 Total: -122.20 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.18 Total: -38.60 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -81.17 3.04 -78.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320801957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.574 kcal (2) G-P(sol) polarization free energy of solvation -81.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds