Wall clock time and date at job start Mon Mar 30 2020 00:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47413 * 2 1 4 4 C 1.46498 * 119.99928 * 264.74798 * 3 2 1 5 5 C 1.52995 * 109.47424 * 89.99759 * 4 3 2 6 6 N 1.46503 * 109.47430 * 179.97438 * 5 4 3 7 7 C 1.36926 * 120.00162 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00465 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.00102 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00091 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99864 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46987 * 90.00070 * 11 9 7 13 13 H 1.48497 * 109.47044 * 210.00458 * 11 9 7 14 14 H 1.48504 * 109.46948 * 330.00488 * 11 9 7 15 15 C 1.34780 * 120.00027 * 85.01745 * 3 2 1 16 16 O 1.21280 * 120.00478 * 185.57366 * 15 3 2 17 17 C 1.50710 * 119.99710 * 5.57196 * 15 3 2 18 18 H 1.08993 * 110.43762 * 323.52721 * 17 15 3 19 19 C 1.54803 * 110.48554 * 200.98182 * 17 15 3 20 20 C 1.55229 * 101.99098 * 220.52157 * 19 17 15 21 21 O 1.44383 * 103.56245 * 36.87936 * 20 19 17 22 22 C 1.43741 * 106.97519 * 320.01688 * 21 20 19 23 23 H 1.08999 * 109.87745 * 267.08594 * 22 21 20 24 24 C 1.53006 * 110.00279 * 146.00697 * 22 21 20 25 25 H 1.08993 * 109.47177 * 185.07787 * 1 2 3 26 26 H 1.09005 * 109.46705 * 305.07769 * 1 2 3 27 27 H 1.08991 * 109.46798 * 65.07159 * 1 2 3 28 28 H 1.08995 * 109.46935 * 240.00033 * 2 1 3 29 29 H 1.09002 * 109.47249 * 120.00208 * 2 1 3 30 30 H 1.09004 * 109.46849 * 209.99688 * 4 3 2 31 31 H 1.08998 * 109.47233 * 329.99098 * 4 3 2 32 32 H 1.08994 * 109.47173 * 300.00368 * 5 4 3 33 33 H 1.09011 * 109.47167 * 59.99671 * 5 4 3 34 34 H 0.96998 * 119.99597 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99703 * 180.02562 * 10 9 7 36 36 H 1.09003 * 110.90990 * 338.64524 * 19 17 15 37 37 H 1.09002 * 110.91107 * 102.24716 * 19 17 15 38 38 H 1.08998 * 110.51891 * 278.38696 * 20 19 17 39 39 H 1.08997 * 110.64548 * 155.43479 * 20 19 17 40 40 H 1.09000 * 109.47235 * 306.78879 * 24 22 21 41 41 H 1.08998 * 109.47106 * 66.79053 * 24 22 21 42 42 H 1.09000 * 109.47172 * 186.78906 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3721 2.0330 -1.2634 5 6 1.1411 2.7388 -1.8353 6 7 1.4949 3.3912 -3.0985 7 6 0.5471 4.0900 -3.7972 8 1 -0.4613 4.1606 -3.4170 9 6 0.8823 4.7077 -4.9943 10 7 -0.0287 5.3798 -5.6656 11 14 2.6266 4.5862 -5.6517 12 1 2.7449 3.3895 -6.5230 13 1 2.9451 5.8048 -6.4382 14 1 3.5763 4.4676 -4.5162 15 6 2.1476 2.0503 1.1628 16 8 2.4544 3.2237 1.1565 17 6 1.9105 1.3405 2.4710 18 1 1.0983 0.6205 2.3716 19 6 1.5960 2.3609 3.5918 20 6 2.3860 1.7746 4.7926 21 8 3.5874 1.2528 4.1851 22 6 3.1981 0.6391 2.9450 23 1 3.0060 -0.4224 3.1011 24 6 4.3031 0.8197 1.9022 25 1 -0.3633 -1.0236 0.0910 26 1 -0.3633 0.5906 0.8411 27 1 -0.3632 0.4331 -0.9319 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.1608 2.7644 -1.0865 31 1 2.7239 1.2839 -1.9728 32 1 0.3524 2.0075 -2.0121 33 1 0.7894 3.4880 -1.1259 34 1 2.4007 3.3281 -3.4398 35 1 0.2055 5.8111 -6.5024 36 1 1.9656 3.3524 3.3302 37 1 0.5271 2.3891 3.8034 38 1 1.8187 0.9754 5.2695 39 1 2.6281 2.5569 5.5120 40 1 4.5606 1.8760 1.8248 41 1 5.1835 0.2522 2.2037 42 1 3.9523 0.4594 0.9350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320877002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:11 Heat of formation + Delta-G solvation = -63.554509 kcal Electronic energy + Delta-G solvation = -21904.750195 eV Core-core repulsion = 18692.553196 eV Total energy + Delta-G solvation = -3212.196999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96805 -38.73139 -36.33348 -34.79823 -32.79365 -31.72267 -31.61838 -30.56149 -28.20269 -26.51841 -23.97466 -23.49539 -22.40589 -21.80887 -21.18942 -18.73923 -17.72015 -17.40124 -16.78283 -16.25931 -15.84325 -15.17567 -15.05377 -14.35509 -14.00195 -13.99611 -13.83293 -13.58140 -13.10801 -12.84637 -12.69484 -12.48157 -12.40983 -12.21137 -12.14937 -11.50489 -11.45085 -11.40815 -11.22179 -11.08590 -11.03382 -10.96559 -10.66443 -10.16059 -10.09231 -9.63053 -9.57906 -8.88013 -8.63192 -7.22976 -5.75397 -3.11410 2.57905 2.92289 3.38841 3.41892 3.46749 3.56866 4.15646 4.30108 4.54643 4.60649 4.69414 4.79947 4.90123 4.97120 5.05155 5.08120 5.20153 5.23031 5.34743 5.40857 5.48050 5.51190 5.57848 5.62613 5.64673 5.67890 5.71820 5.76055 5.91241 5.96210 6.02143 6.12577 6.47360 6.61852 6.67551 6.82516 7.39778 7.99639 8.20159 8.42946 9.21591 9.93819 10.13147 11.43018 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029422 B = 0.004243 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.440885 B = 6597.803396 C = 6722.038843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 N -0.609 5.609 4 C 0.105 3.895 5 C 0.147 3.853 6 N -0.754 5.754 7 C -0.243 4.243 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.529 3.471 16 O -0.525 6.525 17 C -0.147 4.147 18 H 0.105 0.895 19 C -0.145 4.145 20 C 0.048 3.952 21 O -0.370 6.370 22 C 0.092 3.908 23 H 0.076 0.924 24 C -0.168 4.168 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -15.491 19.501 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 N -0.343 5.343 4 C -0.017 4.017 5 C 0.019 3.981 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.582 5.582 11 Si 0.715 3.285 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.203 1.203 15 C 0.316 3.684 16 O -0.400 6.400 17 C -0.169 4.169 18 H 0.123 0.877 19 C -0.183 4.183 20 C -0.028 4.028 21 O -0.289 6.289 22 C 0.034 3.966 23 H 0.093 0.907 24 C -0.225 4.225 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.918 -14.742 19.505 24.939 hybrid contribution 0.759 -0.109 -0.759 1.079 sum 5.677 -14.851 18.746 24.580 Atomic orbital electron populations 1.22323 0.95527 1.02135 1.03532 1.21628 0.94932 0.82386 1.03051 1.47940 1.65728 1.14090 1.06499 1.21750 0.99041 0.97426 0.83531 1.20939 0.94283 0.94880 0.88048 1.42575 1.10348 1.63946 1.23143 1.19026 0.92504 1.24309 1.01406 0.89303 1.24667 0.97244 0.99773 0.97436 1.69704 1.32654 1.38851 1.17035 0.86531 0.85852 0.77342 0.78748 1.21046 1.21643 1.20270 1.20064 0.76656 0.86832 0.84816 1.90731 1.46799 1.15608 1.86862 1.22891 1.00106 0.99376 0.94479 0.87718 1.23224 1.01456 1.00593 0.92985 1.23597 0.85879 0.97721 0.95617 1.88907 1.30126 1.76080 1.33815 1.22541 0.92706 0.96040 0.85288 0.90661 1.22182 0.98510 1.03978 0.97816 0.91540 0.92519 0.91082 0.89729 0.90803 0.89950 0.90551 0.95425 0.95160 0.80714 0.93044 0.88207 0.89773 0.92092 0.88628 0.91042 0.91580 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.97 37.16 0.37 -1.24 16 2 C 0.10 0.93 5.16 -4.04 -0.02 0.90 16 3 N -0.61 -7.82 1.64 -173.68 -0.29 -8.11 16 4 C 0.11 1.67 5.52 -4.05 -0.02 1.65 16 5 C 0.15 2.97 6.58 -4.04 -0.03 2.94 16 6 N -0.75 -18.59 5.41 -59.91 -0.32 -18.91 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 9 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 10 N -0.93 -29.89 13.97 55.49 0.78 -29.12 16 11 Si 0.89 22.47 27.74 -169.99 -4.71 17.76 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 14 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 15 C 0.53 7.44 4.69 -10.98 -0.05 7.39 16 16 O -0.52 -9.75 14.99 5.56 0.08 -9.67 16 17 C -0.15 -1.52 2.46 -90.24 -0.22 -1.74 16 18 H 0.10 0.84 5.88 -51.93 -0.31 0.53 16 19 C -0.14 -1.47 6.66 -24.60 -0.16 -1.64 16 20 C 0.05 0.43 7.72 38.34 0.30 0.72 16 21 O -0.37 -4.29 11.19 -35.23 -0.39 -4.68 16 22 C 0.09 0.92 3.57 -26.15 -0.09 0.82 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 24 C -0.17 -1.79 8.42 37.16 0.31 -1.48 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.53 7.30 -51.93 -0.38 0.15 16 27 H 0.07 0.81 6.78 -51.93 -0.35 0.46 16 28 H 0.08 0.68 7.83 -51.93 -0.41 0.28 16 29 H 0.07 0.49 6.06 -51.93 -0.31 0.18 16 30 H 0.08 1.45 7.50 -51.93 -0.39 1.06 16 31 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 32 H 0.03 0.55 6.78 -51.93 -0.35 0.20 16 33 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 35 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 36 H 0.10 1.29 6.81 -51.93 -0.35 0.94 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.96 7.52 -51.93 -0.39 0.57 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.77 5.77 -51.93 -0.30 0.47 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -35.19 327.39 -6.53 -41.71 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.73 Total: 4.96 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 0.13 Total: 1.13 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.17 Total: -56.14 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.31 Total: -14.35 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.19 -6.53 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320877002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.840 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds