Wall clock time and date at job start Mon Mar 30 2020 00:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47413 * 2 1 4 4 C 1.46498 * 119.99928 * 264.74798 * 3 2 1 5 5 C 1.52995 * 109.47424 * 89.99759 * 4 3 2 6 6 N 1.46503 * 109.47430 * 179.97438 * 5 4 3 7 7 C 1.36926 * 120.00162 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00465 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.00102 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00091 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99864 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46987 * 90.00070 * 11 9 7 13 13 H 1.48497 * 109.47044 * 210.00458 * 11 9 7 14 14 H 1.48504 * 109.46948 * 330.00488 * 11 9 7 15 15 C 1.34780 * 120.00027 * 85.01745 * 3 2 1 16 16 O 1.21280 * 120.00478 * 185.57366 * 15 3 2 17 17 C 1.50710 * 119.99710 * 5.57196 * 15 3 2 18 18 H 1.08993 * 110.43762 * 323.52721 * 17 15 3 19 19 C 1.54803 * 110.48554 * 200.98182 * 17 15 3 20 20 C 1.55229 * 101.99098 * 220.52157 * 19 17 15 21 21 O 1.44383 * 103.56245 * 36.87936 * 20 19 17 22 22 C 1.43741 * 106.97519 * 320.01688 * 21 20 19 23 23 H 1.08999 * 109.87745 * 267.08594 * 22 21 20 24 24 C 1.53006 * 110.00279 * 146.00697 * 22 21 20 25 25 H 1.08993 * 109.47177 * 185.07787 * 1 2 3 26 26 H 1.09005 * 109.46705 * 305.07769 * 1 2 3 27 27 H 1.08991 * 109.46798 * 65.07159 * 1 2 3 28 28 H 1.08995 * 109.46935 * 240.00033 * 2 1 3 29 29 H 1.09002 * 109.47249 * 120.00208 * 2 1 3 30 30 H 1.09004 * 109.46849 * 209.99688 * 4 3 2 31 31 H 1.08998 * 109.47233 * 329.99098 * 4 3 2 32 32 H 1.08994 * 109.47173 * 300.00368 * 5 4 3 33 33 H 1.09011 * 109.47167 * 59.99671 * 5 4 3 34 34 H 0.96998 * 119.99597 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99703 * 180.02562 * 10 9 7 36 36 H 1.09003 * 110.90990 * 338.64524 * 19 17 15 37 37 H 1.09002 * 110.91107 * 102.24716 * 19 17 15 38 38 H 1.08998 * 110.51891 * 278.38696 * 20 19 17 39 39 H 1.08997 * 110.64548 * 155.43479 * 20 19 17 40 40 H 1.09000 * 109.47235 * 306.78879 * 24 22 21 41 41 H 1.08998 * 109.47106 * 66.79053 * 24 22 21 42 42 H 1.09000 * 109.47172 * 186.78906 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3721 2.0330 -1.2634 5 6 1.1411 2.7388 -1.8353 6 7 1.4949 3.3912 -3.0985 7 6 0.5471 4.0900 -3.7972 8 1 -0.4613 4.1606 -3.4170 9 6 0.8823 4.7077 -4.9943 10 7 -0.0287 5.3798 -5.6656 11 14 2.6266 4.5862 -5.6517 12 1 2.7449 3.3895 -6.5230 13 1 2.9451 5.8048 -6.4382 14 1 3.5763 4.4676 -4.5162 15 6 2.1476 2.0503 1.1628 16 8 2.4544 3.2237 1.1565 17 6 1.9105 1.3405 2.4710 18 1 1.0983 0.6205 2.3716 19 6 1.5960 2.3609 3.5918 20 6 2.3860 1.7746 4.7926 21 8 3.5874 1.2528 4.1851 22 6 3.1981 0.6391 2.9450 23 1 3.0060 -0.4224 3.1011 24 6 4.3031 0.8197 1.9022 25 1 -0.3633 -1.0236 0.0910 26 1 -0.3633 0.5906 0.8411 27 1 -0.3632 0.4331 -0.9319 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.1608 2.7644 -1.0865 31 1 2.7239 1.2839 -1.9728 32 1 0.3524 2.0075 -2.0121 33 1 0.7894 3.4880 -1.1259 34 1 2.4007 3.3281 -3.4398 35 1 0.2055 5.8111 -6.5024 36 1 1.9656 3.3524 3.3302 37 1 0.5271 2.3891 3.8034 38 1 1.8187 0.9754 5.2695 39 1 2.6281 2.5569 5.5120 40 1 4.5606 1.8760 1.8248 41 1 5.1835 0.2522 2.2037 42 1 3.9523 0.4594 0.9350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320877002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:11 Heat of formation + Delta-G solvation = -89.050171 kcal Electronic energy + Delta-G solvation = -21905.855770 eV Core-core repulsion = 18692.553196 eV Total energy + Delta-G solvation = -3213.302574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92336 -39.65555 -37.63379 -36.51249 -34.06771 -33.29041 -32.47870 -31.72641 -29.68031 -27.44680 -25.52690 -24.52728 -23.30104 -23.14330 -22.48456 -19.99644 -19.49096 -18.39839 -17.66536 -17.32040 -16.74123 -16.50898 -16.26969 -15.86016 -15.54180 -15.32708 -14.87678 -14.81984 -14.51118 -14.06870 -13.73274 -13.62988 -13.35563 -13.25648 -13.13040 -12.94434 -12.83103 -12.66079 -12.43222 -12.19156 -12.13428 -11.98535 -11.88024 -11.85422 -11.78097 -11.02173 -11.00387 -10.55544 -9.76772 -9.38783 -8.07733 -5.43508 1.35498 1.40378 1.47385 1.51940 1.89052 2.45075 2.84633 3.23149 3.29735 3.48993 3.69699 3.78618 3.97896 4.08167 4.13507 4.15478 4.21013 4.27045 4.33264 4.41843 4.48989 4.52580 4.57604 4.62586 4.79959 4.83101 4.89222 4.92514 4.97524 5.02448 5.08989 5.13970 5.19335 5.42740 5.53227 5.68821 5.90868 6.15166 6.37707 7.00697 7.13715 7.74306 7.95730 9.13751 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029422 B = 0.004243 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.440885 B = 6597.803396 C = 6722.038843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 N -0.605 5.605 4 C 0.117 3.883 5 C 0.151 3.849 6 N -0.755 5.755 7 C -0.243 4.243 8 H 0.050 0.950 9 C -0.061 4.061 10 N -0.982 5.982 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.294 1.294 14 H -0.255 1.255 15 C 0.523 3.477 16 O -0.582 6.582 17 C -0.141 4.141 18 H 0.139 0.861 19 C -0.150 4.150 20 C 0.051 3.949 21 O -0.396 6.396 22 C 0.092 3.908 23 H 0.115 0.885 24 C -0.166 4.166 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.036 0.964 33 H -0.003 1.003 34 H 0.368 0.632 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 -18.879 20.624 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 N -0.337 5.337 4 C -0.006 4.006 5 C 0.024 3.976 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.068 0.932 9 C -0.253 4.253 10 N -0.632 5.632 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.220 1.220 14 H -0.180 1.180 15 C 0.313 3.687 16 O -0.461 6.461 17 C -0.162 4.162 18 H 0.156 0.844 19 C -0.188 4.188 20 C -0.025 4.025 21 O -0.316 6.316 22 C 0.035 3.965 23 H 0.132 0.868 24 C -0.223 4.223 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.202 0.798 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.170 -18.198 20.668 28.221 hybrid contribution 0.248 0.965 -1.050 1.448 sum 6.418 -17.233 19.618 26.889 Atomic orbital electron populations 1.22312 0.95616 1.03700 1.01725 1.22008 0.94783 0.80100 1.05654 1.48046 1.65181 1.15471 1.04998 1.21455 0.95993 0.97739 0.85459 1.21004 0.96828 0.94087 0.85723 1.42534 1.09806 1.63728 1.24112 1.18969 0.91969 1.24604 1.01823 0.93174 1.25573 1.02380 0.99557 0.97769 1.69893 1.35425 1.40243 1.17673 0.85336 0.79901 0.77563 0.78542 1.19252 1.22037 1.18011 1.20834 0.75298 0.86320 0.86287 1.90710 1.49299 1.18357 1.87747 1.22985 1.01697 0.99642 0.91883 0.84370 1.23233 1.02774 0.98840 0.93908 1.23751 0.85095 0.98773 0.94906 1.88880 1.31720 1.76545 1.34473 1.22738 0.91614 0.97703 0.84474 0.86769 1.22175 0.99700 1.01630 0.98840 0.88482 0.92895 0.94117 0.88049 0.87327 0.91981 0.87524 0.94608 0.98486 0.79847 0.93092 0.92007 0.87835 0.88931 0.88233 0.94857 0.90340 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 9.97 71.98 0.72 -1.95 16 2 C 0.10 1.36 5.16 86.38 0.45 1.80 16 3 N -0.60 -14.60 1.64 -821.80 -1.35 -15.95 16 4 C 0.12 3.62 5.52 86.38 0.48 4.10 16 5 C 0.15 6.21 6.58 86.38 0.57 6.78 16 6 N -0.76 -37.39 5.41 -343.45 -1.86 -39.25 16 7 C -0.24 -14.60 10.47 84.04 0.88 -13.72 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 10 N -0.98 -64.49 13.97 21.65 0.30 -64.19 16 11 Si 0.96 46.32 27.74 68.60 1.90 48.22 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.26 -11.31 6.52 99.48 0.65 -10.66 16 15 C 0.52 14.47 4.69 87.66 0.41 14.88 16 16 O -0.58 -22.68 14.99 -3.03 -0.05 -22.73 16 17 C -0.14 -2.58 2.46 -10.55 -0.03 -2.61 16 18 H 0.14 1.59 5.88 -2.39 -0.01 1.58 16 19 C -0.15 -2.89 6.66 31.97 0.21 -2.68 16 20 C 0.05 0.78 7.72 72.75 0.56 1.34 16 21 O -0.40 -8.36 11.19 -148.98 -1.67 -10.02 16 22 C 0.09 1.55 3.57 30.97 0.11 1.66 16 23 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 24 C -0.17 -3.25 8.42 71.98 0.61 -2.65 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.84 7.30 -2.38 -0.02 0.83 16 27 H 0.04 0.87 6.78 -2.39 -0.02 0.86 16 28 H 0.10 1.17 7.83 -2.39 -0.02 1.16 16 29 H 0.11 0.85 6.06 -2.39 -0.01 0.84 16 30 H 0.06 2.19 7.50 -2.38 -0.02 2.18 16 31 H 0.11 2.66 7.86 -2.39 -0.02 2.64 16 32 H 0.04 1.43 6.78 -2.39 -0.02 1.41 16 33 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 34 H 0.37 17.00 5.53 -92.71 -0.51 16.49 16 35 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 36 H 0.06 1.69 6.81 -2.39 -0.02 1.67 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.03 0.90 7.52 -2.39 -0.02 0.88 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.48 5.77 -2.39 -0.01 1.46 16 Total: -1.00 -81.56 327.39 3.15 -78.40 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.44 Total: 21.81 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.43 Total: 3.71 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -2.91 Total: -119.39 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.71 Total: -32.75 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -81.56 3.15 -78.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320877002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.649 kcal (2) G-P(sol) polarization free energy of solvation -81.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds