Wall clock time and date at job start Mon Mar 30 2020 01:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00090 * 2 1 4 4 C 1.46909 * 110.99703 * 123.94617 * 2 1 3 5 5 C 1.53000 * 109.46739 * 66.04766 * 4 2 1 6 6 O 1.42906 * 109.47067 * 65.00318 * 5 4 2 7 7 C 1.42902 * 114.00049 * 180.02562 * 6 5 4 8 8 C 1.53072 * 109.44349 * 89.78947 * 7 6 5 9 9 C 1.53191 * 109.29477 * 181.23710 * 8 7 6 10 10 N 1.46934 * 108.89273 * 305.58196 * 9 8 7 11 11 C 1.34779 * 120.62601 * 233.55707 * 10 9 8 12 12 O 1.21686 * 120.00337 * 354.74939 * 11 10 9 13 13 C 1.46373 * 119.99553 * 174.74174 * 11 10 9 14 14 H 1.08005 * 119.99942 * 5.60649 * 13 11 10 15 15 C 1.40048 * 119.99921 * 185.59755 * 13 11 10 16 16 N 1.30674 * 120.00304 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99849 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47219 * 90.00335 * 17 15 13 19 19 H 1.48507 * 109.47174 * 209.99929 * 17 15 13 20 20 H 1.48496 * 109.47460 * 330.00305 * 17 15 13 21 21 C 1.46926 * 118.73697 * 53.53560 * 10 9 8 22 22 C 1.53035 * 109.45780 * 209.99980 * 7 6 5 23 23 H 1.08994 * 109.47250 * 296.05229 * 1 2 3 24 24 H 1.08999 * 109.47052 * 56.05357 * 1 2 3 25 25 H 1.09000 * 109.47003 * 176.04784 * 1 2 3 26 26 H 1.08999 * 109.46956 * 183.95526 * 3 2 1 27 27 H 1.08999 * 109.46547 * 303.94722 * 3 2 1 28 28 H 1.08993 * 109.47211 * 63.94715 * 3 2 1 29 29 H 1.08996 * 109.47337 * 306.04964 * 4 2 1 30 30 H 1.08998 * 109.47070 * 186.04491 * 4 2 1 31 31 H 1.08999 * 109.47357 * 305.00023 * 5 4 2 32 32 H 1.08996 * 109.46854 * 184.99667 * 5 4 2 33 33 H 1.09002 * 109.45604 * 329.96313 * 7 6 5 34 34 H 1.08997 * 109.38712 * 61.36007 * 8 7 6 35 35 H 1.08999 * 109.62576 * 301.25164 * 8 7 6 36 36 H 1.08994 * 109.59009 * 185.72359 * 9 8 7 37 37 H 1.08999 * 109.58886 * 65.43570 * 9 8 7 38 38 H 0.96993 * 120.00281 * 179.97438 * 16 15 13 39 39 H 1.08991 * 109.58898 * 66.18331 * 21 10 9 40 40 H 1.09002 * 109.58153 * 186.46406 * 21 10 9 41 41 H 1.08997 * 109.50163 * 58.66897 * 22 7 6 42 42 H 1.09002 * 109.52115 * 298.58919 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1378 5 6 1.6313 -2.2425 0.9706 6 8 2.2956 -2.7696 -0.1797 7 6 2.0213 -4.1500 -0.4276 8 6 0.7930 -4.2708 -1.3331 9 6 0.4837 -5.7520 -1.5715 10 7 1.6885 -6.4118 -2.0930 11 6 1.6416 -7.1217 -3.2377 12 8 0.5770 -7.3014 -3.7991 13 6 2.8713 -7.6765 -3.8056 14 1 3.8014 -7.5954 -3.2627 15 6 2.8417 -8.3127 -5.0529 16 7 1.7165 -8.4106 -5.7100 17 14 4.4110 -9.0214 -5.7773 18 1 4.5654 -10.4320 -5.3395 19 1 4.3399 -8.9682 -7.2597 20 1 5.5751 -8.2275 -5.3088 21 6 2.9454 -6.2824 -1.3432 22 6 3.2296 -4.7952 -1.1101 23 1 -0.3633 0.4513 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0827 1.3432 -0.0709 27 1 1.5898 1.9162 -0.8525 28 1 1.7043 1.8724 0.9232 29 1 1.5610 -0.3871 2.0629 30 1 3.0796 -0.6610 1.1758 31 1 0.5531 -2.3388 0.8435 32 1 1.9437 -2.7962 1.8560 33 1 1.8247 -4.6565 0.5173 34 1 0.9971 -3.7836 -2.2865 35 1 -0.0623 -3.7928 -0.8555 36 1 -0.3258 -5.8444 -2.2955 37 1 0.1888 -6.2196 -0.6321 38 1 1.6961 -8.8509 -6.5740 39 1 2.8527 -6.7914 -0.3840 40 1 3.7597 -6.7268 -1.9156 41 1 4.1075 -4.6881 -0.4730 42 1 3.4123 -4.3054 -2.0666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324121379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:14 Heat of formation + Delta-G solvation = -75.405998 kcal Electronic energy + Delta-G solvation = -21392.859501 eV Core-core repulsion = 18180.148582 eV Total energy + Delta-G solvation = -3212.710919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.10205 -37.95612 -36.77571 -34.90939 -32.52081 -31.18354 -30.54927 -29.34293 -27.75924 -26.32432 -24.38372 -23.50525 -22.56426 -21.05303 -20.50671 -18.84439 -16.82543 -16.53800 -16.19273 -15.62099 -15.18338 -15.09109 -14.49024 -14.29282 -14.15281 -13.86885 -13.63105 -13.12455 -12.78754 -12.55482 -12.40596 -12.30618 -11.89342 -11.84346 -11.61597 -11.49691 -11.36003 -11.12072 -10.94672 -10.78959 -10.65239 -10.47589 -10.23161 -10.19377 -9.85726 -9.12200 -8.83401 -8.46347 -7.55328 -7.21031 -6.17440 -4.62080 3.15842 3.22733 3.25923 3.72124 3.85414 4.10964 4.57797 4.61100 4.85060 4.91098 5.06454 5.14132 5.17149 5.27675 5.32860 5.34832 5.41626 5.45644 5.51251 5.67460 5.68756 5.73694 5.75285 5.82670 5.90170 6.04071 6.19724 6.26016 6.33187 6.51479 6.59924 6.64005 6.83779 6.85986 6.87035 7.47715 7.53171 7.65394 8.16378 8.37814 9.04561 9.46081 10.60074 10.78614 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030655 B = 0.003772 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.180392 B = 7420.898518 C = 7584.136519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.065 3.935 6 O -0.367 6.367 7 C 0.094 3.906 8 C -0.148 4.148 9 C 0.123 3.877 10 N -0.643 5.643 11 C 0.560 3.440 12 O -0.578 6.578 13 C -0.544 4.544 14 H 0.073 0.927 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.125 3.875 22 C -0.128 4.128 23 H 0.021 0.979 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.021 0.979 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.268 0.732 39 H 0.041 0.959 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 14.070 13.934 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.261 5.261 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.013 4.013 6 O -0.286 6.286 7 C 0.037 3.963 8 C -0.187 4.187 9 C -0.001 4.001 10 N -0.381 5.381 11 C 0.366 3.634 12 O -0.461 6.461 13 C -0.581 4.581 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.188 1.188 21 C 0.000 4.000 22 C -0.167 4.167 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.250 13.772 12.884 18.900 hybrid contribution 0.303 0.047 0.680 0.746 sum 1.554 13.819 13.564 19.426 Atomic orbital electron populations 1.22449 0.87474 1.02601 1.00122 1.61883 1.07806 1.13404 1.43004 1.22376 1.00942 0.88765 1.00146 1.22167 1.01183 0.92552 0.91183 1.22495 0.96665 0.93316 0.88781 1.88026 1.69620 1.25154 1.45793 1.22106 0.95669 0.81485 0.97056 1.22391 0.97205 0.98202 1.00889 1.21072 0.90904 0.89917 0.98253 1.48210 1.07304 1.55920 1.26691 1.18247 0.90332 0.77322 0.77503 1.90585 1.32057 1.62602 1.60863 1.20979 0.94014 1.38938 1.04165 0.90859 1.25731 0.96709 0.94215 0.96561 1.70014 1.25973 1.32137 1.11613 0.86394 0.82449 0.79716 0.78351 1.19748 1.20471 1.18824 1.21415 0.89531 0.93274 0.95783 1.22025 0.96296 0.96977 1.01361 0.96037 0.91330 0.91003 0.91288 0.91366 0.96080 0.93781 0.89910 0.93480 0.93391 0.93059 0.90940 0.92352 0.89667 0.94307 0.92110 0.94110 0.88321 0.91511 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.33 60.06 0.56 0.77 16 2 N -0.54 -6.05 4.97 -251.26 -1.25 -7.30 16 3 C 0.03 0.23 9.57 60.07 0.57 0.81 16 4 C 0.06 0.58 5.34 -3.82 -0.02 0.56 16 5 C 0.06 0.75 5.80 37.16 0.22 0.96 16 6 O -0.37 -5.53 9.93 -35.23 -0.35 -5.88 16 7 C 0.09 1.46 2.57 -26.68 -0.07 1.39 16 8 C -0.15 -2.53 5.70 -26.59 -0.15 -2.68 16 9 C 0.12 2.47 6.41 -3.71 -0.02 2.45 16 10 N -0.64 -14.89 2.97 -174.43 -0.52 -15.41 16 11 C 0.56 16.16 7.61 -12.99 -0.10 16.06 16 12 O -0.58 -18.96 14.48 5.20 0.08 -18.89 16 13 C -0.54 -15.34 8.88 -35.63 -0.32 -15.65 16 14 H 0.07 1.87 5.64 -52.48 -0.30 1.57 16 15 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 16 N -0.77 -23.19 11.84 55.55 0.66 -22.54 16 17 Si 0.91 20.15 29.56 -169.99 -5.02 15.13 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 C 0.12 2.35 6.35 -3.71 -0.02 2.33 16 22 C -0.13 -2.11 5.73 -26.61 -0.15 -2.27 16 23 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 25 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 26 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 31 H 0.05 0.53 6.03 -51.93 -0.31 0.22 16 32 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 36 H 0.08 1.93 7.04 -51.93 -0.37 1.56 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 1.94 5.30 -51.93 -0.28 1.67 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -34.53 333.79 -7.99 -42.52 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.01 Total: 0.24 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 0.40 Total: 7.09 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -1.11 Total: -45.25 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.27 Total: -24.76 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.53 -7.99 -42.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324121379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.886 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds