Wall clock time and date at job start Mon Mar 30 2020 01:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00090 * 2 1 4 4 C 1.46909 * 110.99703 * 123.94617 * 2 1 3 5 5 C 1.53000 * 109.46739 * 66.04766 * 4 2 1 6 6 O 1.42906 * 109.47067 * 65.00318 * 5 4 2 7 7 C 1.42902 * 114.00049 * 180.02562 * 6 5 4 8 8 C 1.53072 * 109.44349 * 89.78947 * 7 6 5 9 9 C 1.53191 * 109.29477 * 181.23710 * 8 7 6 10 10 N 1.46934 * 108.89273 * 305.58196 * 9 8 7 11 11 C 1.34779 * 120.62601 * 233.55707 * 10 9 8 12 12 O 1.21686 * 120.00337 * 354.74939 * 11 10 9 13 13 C 1.46373 * 119.99553 * 174.74174 * 11 10 9 14 14 H 1.08005 * 119.99942 * 5.60649 * 13 11 10 15 15 C 1.40048 * 119.99921 * 185.59755 * 13 11 10 16 16 N 1.30674 * 120.00304 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99849 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47219 * 90.00335 * 17 15 13 19 19 H 1.48507 * 109.47174 * 209.99929 * 17 15 13 20 20 H 1.48496 * 109.47460 * 330.00305 * 17 15 13 21 21 C 1.46926 * 118.73697 * 53.53560 * 10 9 8 22 22 C 1.53035 * 109.45780 * 209.99980 * 7 6 5 23 23 H 1.08994 * 109.47250 * 296.05229 * 1 2 3 24 24 H 1.08999 * 109.47052 * 56.05357 * 1 2 3 25 25 H 1.09000 * 109.47003 * 176.04784 * 1 2 3 26 26 H 1.08999 * 109.46956 * 183.95526 * 3 2 1 27 27 H 1.08999 * 109.46547 * 303.94722 * 3 2 1 28 28 H 1.08993 * 109.47211 * 63.94715 * 3 2 1 29 29 H 1.08996 * 109.47337 * 306.04964 * 4 2 1 30 30 H 1.08998 * 109.47070 * 186.04491 * 4 2 1 31 31 H 1.08999 * 109.47357 * 305.00023 * 5 4 2 32 32 H 1.08996 * 109.46854 * 184.99667 * 5 4 2 33 33 H 1.09002 * 109.45604 * 329.96313 * 7 6 5 34 34 H 1.08997 * 109.38712 * 61.36007 * 8 7 6 35 35 H 1.08999 * 109.62576 * 301.25164 * 8 7 6 36 36 H 1.08994 * 109.59009 * 185.72359 * 9 8 7 37 37 H 1.08999 * 109.58886 * 65.43570 * 9 8 7 38 38 H 0.96993 * 120.00281 * 179.97438 * 16 15 13 39 39 H 1.08991 * 109.58898 * 66.18331 * 21 10 9 40 40 H 1.09002 * 109.58153 * 186.46406 * 21 10 9 41 41 H 1.08997 * 109.50163 * 58.66897 * 22 7 6 42 42 H 1.09002 * 109.52115 * 298.58919 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1378 5 6 1.6313 -2.2425 0.9706 6 8 2.2956 -2.7696 -0.1797 7 6 2.0213 -4.1500 -0.4276 8 6 0.7930 -4.2708 -1.3331 9 6 0.4837 -5.7520 -1.5715 10 7 1.6885 -6.4118 -2.0930 11 6 1.6416 -7.1217 -3.2377 12 8 0.5770 -7.3014 -3.7991 13 6 2.8713 -7.6765 -3.8056 14 1 3.8014 -7.5954 -3.2627 15 6 2.8417 -8.3127 -5.0529 16 7 1.7165 -8.4106 -5.7100 17 14 4.4110 -9.0214 -5.7773 18 1 4.5654 -10.4320 -5.3395 19 1 4.3399 -8.9682 -7.2597 20 1 5.5751 -8.2275 -5.3088 21 6 2.9454 -6.2824 -1.3432 22 6 3.2296 -4.7952 -1.1101 23 1 -0.3633 0.4513 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0827 1.3432 -0.0709 27 1 1.5898 1.9162 -0.8525 28 1 1.7043 1.8724 0.9232 29 1 1.5610 -0.3871 2.0629 30 1 3.0796 -0.6610 1.1758 31 1 0.5531 -2.3388 0.8435 32 1 1.9437 -2.7962 1.8560 33 1 1.8247 -4.6565 0.5173 34 1 0.9971 -3.7836 -2.2865 35 1 -0.0623 -3.7928 -0.8555 36 1 -0.3258 -5.8444 -2.2955 37 1 0.1888 -6.2196 -0.6321 38 1 1.6961 -8.8509 -6.5740 39 1 2.8527 -6.7914 -0.3840 40 1 3.7597 -6.7268 -1.9156 41 1 4.1075 -4.6881 -0.4730 42 1 3.4123 -4.3054 -2.0666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324121379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:14 Heat of formation + Delta-G solvation = -101.025559 kcal Electronic energy + Delta-G solvation = -21393.970449 eV Core-core repulsion = 18180.148582 eV Total energy + Delta-G solvation = -3213.821866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54285 -39.25883 -38.04023 -36.57067 -34.65895 -32.70170 -32.04518 -30.38271 -28.49380 -28.38057 -25.51233 -24.82479 -24.05371 -22.17311 -21.86235 -20.57045 -18.52749 -18.03114 -17.44267 -17.03092 -16.35001 -16.08524 -15.93208 -15.81923 -15.53125 -15.42822 -14.85287 -14.47629 -14.34405 -13.86863 -13.56090 -13.31155 -13.28731 -13.15526 -12.95140 -12.74526 -12.64150 -12.61998 -12.50480 -12.34422 -12.14202 -11.94959 -11.69111 -11.68166 -11.35253 -10.91921 -10.31994 -9.76228 -9.20958 -9.10290 -8.27936 -6.82440 1.41083 1.42752 1.57913 2.25157 2.46114 2.72261 2.87769 3.07336 3.62311 3.81976 3.91772 4.07111 4.18139 4.20948 4.26451 4.32664 4.39975 4.48045 4.48727 4.53932 4.62130 4.67475 4.74936 4.78895 4.85815 4.90891 4.93364 5.01005 5.02464 5.03311 5.06260 5.19410 5.41552 5.41964 5.78779 6.10058 6.13858 6.16244 6.41100 6.47088 6.89308 7.43132 8.47831 8.68692 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030655 B = 0.003772 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.180392 B = 7420.898518 C = 7584.136519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.567 5.567 3 C 0.027 3.973 4 C 0.059 3.941 5 C 0.057 3.943 6 O -0.383 6.383 7 C 0.103 3.897 8 C -0.136 4.136 9 C 0.121 3.879 10 N -0.647 5.647 11 C 0.540 3.460 12 O -0.635 6.635 13 C -0.569 4.569 14 H 0.096 0.904 15 C 0.027 3.973 16 N -0.825 5.825 17 Si 0.996 3.004 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.246 1.246 21 C 0.121 3.879 22 C -0.120 4.120 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.273 0.727 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 14.728 16.174 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.292 5.292 3 C -0.121 4.121 4 C -0.069 4.069 5 C -0.019 4.019 6 O -0.302 6.302 7 C 0.045 3.955 8 C -0.174 4.174 9 C -0.002 4.002 10 N -0.384 5.384 11 C 0.346 3.654 12 O -0.522 6.522 13 C -0.605 4.605 14 H 0.114 0.886 15 C -0.188 4.188 16 N -0.455 5.455 17 Si 0.816 3.184 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.169 1.169 21 C -0.002 4.002 22 C -0.159 4.159 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.253 14.476 15.196 21.238 hybrid contribution -0.375 -0.074 0.075 0.389 sum 2.878 14.401 15.271 21.187 Atomic orbital electron populations 1.22417 0.87030 1.02131 1.00894 1.61879 1.08532 1.14716 1.44031 1.22373 1.00854 0.87941 1.00893 1.22183 1.01244 0.91683 0.91790 1.22765 0.96651 0.94270 0.88248 1.88013 1.70087 1.24537 1.47592 1.21931 0.93798 0.82417 0.97361 1.22256 0.99518 0.95496 1.00175 1.21186 0.88904 0.92080 0.98066 1.48105 1.09788 1.54788 1.25671 1.18692 0.90022 0.77858 0.78826 1.90531 1.33738 1.64878 1.63082 1.21530 0.94749 1.39196 1.05039 0.88577 1.27029 1.00983 0.94022 0.96745 1.70198 1.29383 1.33485 1.12402 0.85039 0.77053 0.79123 0.77229 1.18512 1.20012 1.16920 1.21618 0.87088 0.95371 0.96120 1.21912 0.98221 0.94872 1.00851 0.94511 0.91434 0.91948 0.91323 0.91321 0.94695 0.91592 0.90034 0.93265 0.91237 0.90472 0.94170 0.89835 0.93339 0.91559 0.91675 0.91123 0.89456 0.88334 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.33 127.69 1.19 1.61 16 2 N -0.57 -11.75 4.97 -948.86 -4.71 -16.46 16 3 C 0.03 0.44 9.57 127.69 1.22 1.66 16 4 C 0.06 1.04 5.34 86.30 0.46 1.50 16 5 C 0.06 1.14 5.80 71.98 0.42 1.56 16 6 O -0.38 -10.60 9.93 -148.98 -1.48 -12.08 16 7 C 0.10 2.93 2.57 30.63 0.08 3.01 16 8 C -0.14 -4.55 5.70 30.68 0.17 -4.37 16 9 C 0.12 4.93 6.41 86.36 0.55 5.48 16 10 N -0.65 -30.33 2.97 -823.99 -2.45 -32.78 16 11 C 0.54 32.31 7.61 86.36 0.66 32.96 16 12 O -0.63 -43.96 14.48 -4.30 -0.06 -44.02 16 13 C -0.57 -32.59 8.88 24.83 0.22 -32.37 16 14 H 0.10 4.87 5.64 -2.91 -0.02 4.85 16 15 C 0.03 1.52 5.50 85.30 0.47 1.99 16 16 N -0.82 -51.60 11.84 21.84 0.26 -51.35 16 17 Si 1.00 41.37 29.56 68.60 2.03 43.40 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 21 C 0.12 4.38 6.35 86.36 0.55 4.93 16 22 C -0.12 -3.73 5.73 30.67 0.18 -3.55 16 23 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 25 H 0.06 1.22 6.37 -2.39 -0.02 1.21 16 26 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 27 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 28 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 30 H 0.08 1.45 8.06 -2.39 -0.02 1.43 16 31 H 0.05 0.97 6.03 -2.39 -0.01 0.95 16 32 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 2.36 7.84 -2.39 -0.02 2.34 16 36 H 0.05 2.31 7.04 -2.39 -0.02 2.29 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 3.34 5.30 -2.39 -0.01 3.33 16 41 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -78.97 333.79 0.74 -78.23 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.99 Total: 20.65 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.17 Total: 14.41 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -6.91 Total: -100.59 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -1.54 Total: -56.10 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -78.97 0.74 -78.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324121379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.795 kcal (2) G-P(sol) polarization free energy of solvation -78.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds