Wall clock time and date at job start Mon Mar 30 2020 01:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99934 * 2 1 4 4 O 1.21583 * 119.99916 * 179.97438 * 3 2 1 5 5 N 1.34774 * 120.00122 * 0.02562 * 3 2 1 6 6 C 1.46499 * 120.00244 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47458 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.47359 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47230 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99616 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99993 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99689 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99829 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46970 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47026 * 120.00192 * 13 11 9 16 16 H 1.48500 * 109.47010 * 239.99983 * 13 11 9 17 17 C 1.46503 * 120.00069 * 180.02562 * 2 1 3 18 18 C 1.53175 * 109.53763 * 300.44344 * 17 2 1 19 19 C 1.53092 * 109.16179 * 176.85076 * 18 17 2 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 1.08994 * 109.47320 * 269.99539 * 1 2 3 24 24 H 1.09006 * 109.47037 * 30.00065 * 1 2 3 25 25 H 1.08996 * 109.47116 * 149.99078 * 1 2 3 26 26 H 0.96999 * 120.00210 * 359.97438 * 5 3 2 27 27 H 1.08999 * 109.47480 * 300.00210 * 6 5 3 28 28 H 1.09002 * 109.46536 * 59.99833 * 6 5 3 29 29 H 1.08999 * 109.47065 * 300.00609 * 7 6 5 30 30 H 1.08999 * 109.46495 * 59.99937 * 7 6 5 31 31 H 1.09001 * 109.47002 * 300.00180 * 8 7 6 32 32 H 1.09002 * 109.46614 * 59.99990 * 8 7 6 33 33 H 0.97000 * 119.99954 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.61242 * 180.22724 * 17 2 1 35 35 H 1.09006 * 109.52647 * 296.75376 * 18 17 2 36 36 H 1.08998 * 109.52537 * 56.94268 * 18 17 2 37 37 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 38 38 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 39 39 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 40 40 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 41 41 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 42 42 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1975 3.6031 0.0011 7 6 1.2032 4.7661 0.0010 8 6 1.9682 6.0911 0.0009 9 6 0.9889 7.2366 0.0002 10 1 -0.0729 7.0392 0.0002 11 6 1.4485 8.5365 -0.0006 12 7 2.7415 8.7767 -0.0011 13 14 0.2346 9.9563 -0.0008 14 1 -1.1512 9.4227 0.0005 15 1 0.4454 10.7880 1.2113 16 1 0.4446 10.7869 -1.2137 17 6 2.1975 -1.2687 -0.0006 18 6 1.8202 -2.0786 1.2436 19 6 2.5294 -3.4345 1.1947 20 8 2.1668 -4.1171 -0.0073 21 6 2.5375 -3.4289 -1.2036 22 6 1.8286 -2.0729 -1.2510 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5140 26 1 0.4950 2.3345 0.0005 27 1 2.8242 3.6606 0.8910 28 1 2.8241 3.6612 -0.8889 29 1 0.5769 4.7085 -0.8892 30 1 0.5763 4.7081 0.8907 31 1 2.5948 6.1489 0.8909 32 1 2.5949 6.1487 -0.8891 33 1 3.0649 9.6912 -0.0012 34 1 3.2696 -1.0722 0.0036 35 1 2.1296 -1.5378 2.1380 36 1 0.7413 -2.2324 1.2648 37 1 2.2312 -4.0320 2.0562 38 1 3.6084 -3.2814 1.2144 39 1 2.2451 -4.0224 -2.0698 40 1 3.6166 -3.2757 -1.2154 41 1 0.7499 -2.2265 -1.2802 42 1 2.1441 -1.5278 -2.1407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325205166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:02 Heat of formation + Delta-G solvation = -89.498776 kcal Electronic energy + Delta-G solvation = -20778.764907 eV Core-core repulsion = 17565.442880 eV Total energy + Delta-G solvation = -3213.322027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54166 -39.13629 -36.14480 -35.27782 -33.47220 -32.34337 -31.45810 -30.81477 -27.24687 -26.76513 -24.70309 -23.90857 -22.88518 -20.78761 -20.46892 -19.48934 -17.99487 -16.99549 -16.42771 -16.34063 -15.81193 -15.71205 -15.07157 -14.61986 -14.52943 -14.37251 -13.88430 -13.83292 -13.48902 -13.24091 -12.67633 -12.61285 -12.25266 -11.80019 -11.74731 -11.63714 -11.61342 -11.24388 -10.92485 -10.72002 -10.63944 -10.55990 -10.16561 -9.91042 -9.87021 -9.44139 -9.11538 -8.95794 -8.52246 -8.38024 -6.02423 -4.05462 2.62389 3.29342 3.29571 3.36848 3.40290 3.54065 4.02592 4.40330 4.44196 4.48746 4.63815 4.76553 4.82190 4.91489 5.04257 5.20127 5.22450 5.33462 5.34771 5.36671 5.46471 5.52820 5.63668 5.69551 5.78068 5.81154 5.91526 6.17976 6.35697 6.53245 6.61630 6.79686 6.83929 7.00639 7.01850 7.63602 7.76194 7.96620 8.04611 8.37523 8.70671 9.01479 9.58757 11.08955 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.054972 B = 0.002725 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.232148 B =10274.074697 C =10433.792510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.632 5.632 3 C 0.702 3.298 4 O -0.592 6.592 5 N -0.740 5.740 6 C 0.133 3.867 7 C -0.120 4.120 8 C 0.024 3.976 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.156 3.844 18 C -0.165 4.165 19 C 0.064 3.936 20 O -0.384 6.384 21 C 0.064 3.936 22 C -0.166 4.166 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.394 0.606 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 -24.771 -0.080 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.369 5.369 3 C 0.403 3.597 4 O -0.471 6.471 5 N -0.395 5.395 6 C 0.010 3.990 7 C -0.158 4.158 8 C -0.014 4.014 9 C -0.560 4.560 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.052 3.948 18 C -0.204 4.204 19 C -0.013 4.013 20 O -0.303 6.303 21 C -0.013 4.013 22 C -0.205 4.205 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.229 0.771 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.588 -24.746 -0.081 25.005 hybrid contribution -1.088 1.262 0.004 1.666 sum -4.677 -23.485 -0.077 23.946 Atomic orbital electron populations 1.21692 0.80206 1.02990 1.01732 1.47045 1.06140 1.04643 1.79113 1.15959 0.85390 0.80439 0.77862 1.90896 1.11630 1.86181 1.58363 1.45540 1.09871 1.05144 1.78995 1.21527 0.95172 0.80380 1.01892 1.21887 0.97848 0.95280 1.00777 1.19032 0.95487 0.89167 0.97701 1.21239 0.93014 0.90932 1.50799 0.92611 1.25034 0.95132 0.99043 0.95298 1.69976 1.12516 1.20124 1.50650 0.86526 0.81370 0.82425 0.77606 1.19773 1.20998 1.20994 1.20891 0.98346 0.81823 0.93761 1.22588 1.02086 0.96615 0.99065 1.22568 0.98556 0.92510 0.87698 1.87928 1.81878 1.46633 1.13829 1.22560 0.98499 0.92391 0.87856 1.22605 1.02110 0.96724 0.99058 0.92689 0.91282 0.90839 0.77105 0.91938 0.91961 0.92814 0.92797 0.96234 0.96235 0.92972 0.87813 0.90348 0.90745 0.88537 0.92771 0.88534 0.92760 0.90691 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 9.19 59.85 0.55 1.18 16 2 N -0.63 -7.38 2.77 -179.46 -0.50 -7.87 16 3 C 0.70 11.13 8.28 -86.92 -0.72 10.41 16 4 O -0.59 -11.76 15.67 5.29 0.08 -11.68 16 5 N -0.74 -11.15 5.42 -65.23 -0.35 -11.50 16 6 C 0.13 2.42 5.67 -4.04 -0.02 2.40 16 7 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 8 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 9 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 13 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.16 1.63 2.61 -67.75 -0.18 1.45 16 18 C -0.16 -1.41 5.46 -26.59 -0.15 -1.55 16 19 C 0.06 0.50 6.84 37.21 0.25 0.75 16 20 O -0.38 -3.54 10.77 -35.23 -0.38 -3.92 16 21 C 0.06 0.50 6.84 37.20 0.25 0.75 16 22 C -0.17 -1.41 5.46 -26.59 -0.15 -1.56 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 25 H 0.07 0.48 6.38 -51.93 -0.33 0.15 16 26 H 0.39 4.84 6.20 -40.82 -0.25 4.58 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.10 1.33 6.91 -51.93 -0.36 0.97 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.60 7.57 -51.93 -0.39 0.20 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.59 6.56 -51.93 -0.34 0.25 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -33.33 335.83 -8.26 -41.58 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.04 Total: -0.40 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.84 Total: -1.58 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.11 Total: -45.51 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.30 Total: -15.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.33 -8.26 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325205166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.916 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds