Wall clock time and date at job start Mon Mar 30 2020 01:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99934 * 2 1 4 4 O 1.21583 * 119.99916 * 179.97438 * 3 2 1 5 5 N 1.34774 * 120.00122 * 0.02562 * 3 2 1 6 6 C 1.46499 * 120.00244 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47458 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.47359 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47230 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99616 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99993 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99689 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99829 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46970 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47026 * 120.00192 * 13 11 9 16 16 H 1.48500 * 109.47010 * 239.99983 * 13 11 9 17 17 C 1.46503 * 120.00069 * 180.02562 * 2 1 3 18 18 C 1.53175 * 109.53763 * 300.44344 * 17 2 1 19 19 C 1.53092 * 109.16179 * 176.85076 * 18 17 2 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 1.08994 * 109.47320 * 269.99539 * 1 2 3 24 24 H 1.09006 * 109.47037 * 30.00065 * 1 2 3 25 25 H 1.08996 * 109.47116 * 149.99078 * 1 2 3 26 26 H 0.96999 * 120.00210 * 359.97438 * 5 3 2 27 27 H 1.08999 * 109.47480 * 300.00210 * 6 5 3 28 28 H 1.09002 * 109.46536 * 59.99833 * 6 5 3 29 29 H 1.08999 * 109.47065 * 300.00609 * 7 6 5 30 30 H 1.08999 * 109.46495 * 59.99937 * 7 6 5 31 31 H 1.09001 * 109.47002 * 300.00180 * 8 7 6 32 32 H 1.09002 * 109.46614 * 59.99990 * 8 7 6 33 33 H 0.97000 * 119.99954 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.61242 * 180.22724 * 17 2 1 35 35 H 1.09006 * 109.52647 * 296.75376 * 18 17 2 36 36 H 1.08998 * 109.52537 * 56.94268 * 18 17 2 37 37 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 38 38 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 39 39 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 40 40 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 41 41 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 42 42 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1975 3.6031 0.0011 7 6 1.2032 4.7661 0.0010 8 6 1.9682 6.0911 0.0009 9 6 0.9889 7.2366 0.0002 10 1 -0.0729 7.0392 0.0002 11 6 1.4485 8.5365 -0.0006 12 7 2.7415 8.7767 -0.0011 13 14 0.2346 9.9563 -0.0008 14 1 -1.1512 9.4227 0.0005 15 1 0.4454 10.7880 1.2113 16 1 0.4446 10.7869 -1.2137 17 6 2.1975 -1.2687 -0.0006 18 6 1.8202 -2.0786 1.2436 19 6 2.5294 -3.4345 1.1947 20 8 2.1668 -4.1171 -0.0073 21 6 2.5375 -3.4289 -1.2036 22 6 1.8286 -2.0729 -1.2510 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5140 26 1 0.4950 2.3345 0.0005 27 1 2.8242 3.6606 0.8910 28 1 2.8241 3.6612 -0.8889 29 1 0.5769 4.7085 -0.8892 30 1 0.5763 4.7081 0.8907 31 1 2.5948 6.1489 0.8909 32 1 2.5949 6.1487 -0.8891 33 1 3.0649 9.6912 -0.0012 34 1 3.2696 -1.0722 0.0036 35 1 2.1296 -1.5378 2.1380 36 1 0.7413 -2.2324 1.2648 37 1 2.2312 -4.0320 2.0562 38 1 3.6084 -3.2814 1.2144 39 1 2.2451 -4.0224 -2.0698 40 1 3.6166 -3.2757 -1.2154 41 1 0.7499 -2.2265 -1.2802 42 1 2.1441 -1.5278 -2.1407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325205166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:02 Heat of formation + Delta-G solvation = -112.087769 kcal Electronic energy + Delta-G solvation = -20779.744439 eV Core-core repulsion = 17565.442880 eV Total energy + Delta-G solvation = -3214.301560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.56906 -40.01518 -37.28202 -36.68147 -35.26842 -33.60773 -32.32615 -32.10048 -28.60432 -27.96953 -25.83968 -24.56726 -24.49247 -22.32484 -21.62020 -20.47901 -19.16251 -18.47756 -17.83358 -17.18658 -16.83256 -16.81411 -16.46362 -15.87326 -15.73975 -15.66764 -14.89518 -14.74690 -14.45009 -14.24139 -14.19579 -13.74103 -13.48670 -13.30884 -13.24718 -12.78139 -12.52994 -12.38039 -12.33747 -12.27105 -11.96598 -11.68784 -11.62379 -11.37846 -11.27040 -11.12294 -10.63087 -10.56385 -10.25470 -9.54425 -8.19706 -6.31219 1.41854 1.42062 1.54573 1.56844 2.06007 2.41763 2.90263 2.98441 3.14236 3.65046 3.78703 3.99182 4.05699 4.13997 4.15425 4.21258 4.27231 4.39622 4.54240 4.55755 4.59935 4.68797 4.77057 4.80777 4.88646 4.94267 4.94865 5.02261 5.08831 5.14693 5.19231 5.44608 5.48575 5.54192 5.70298 5.83915 5.89980 6.21089 6.22199 6.85884 6.92732 7.38451 7.49681 8.92781 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.054972 B = 0.002725 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.232148 B =10274.074697 C =10433.792510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.623 5.623 3 C 0.696 3.304 4 O -0.640 6.640 5 N -0.729 5.729 6 C 0.149 3.851 7 C -0.099 4.099 8 C 0.024 3.976 9 C -0.539 4.539 10 H 0.067 0.933 11 C -0.005 4.005 12 N -0.936 5.936 13 Si 0.968 3.032 14 H -0.258 1.258 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.149 3.851 18 C -0.156 4.156 19 C 0.063 3.937 20 O -0.395 6.395 21 C 0.063 3.937 22 C -0.157 4.157 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.410 0.590 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.068 0.932 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.116 0.884 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 -25.898 -0.101 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.359 5.359 3 C 0.397 3.603 4 O -0.522 6.522 5 N -0.386 5.386 6 C 0.024 3.976 7 C -0.137 4.137 8 C -0.014 4.014 9 C -0.577 4.577 10 H 0.085 0.915 11 C -0.202 4.202 12 N -0.576 5.576 13 Si 0.793 3.207 14 H -0.181 1.181 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.045 3.955 18 C -0.194 4.194 19 C -0.014 4.014 20 O -0.314 6.314 21 C -0.014 4.014 22 C -0.196 4.196 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.248 0.752 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.449 -25.924 -0.101 26.714 hybrid contribution -0.189 1.548 0.011 1.560 sum -6.637 -24.375 -0.090 25.263 Atomic orbital electron populations 1.21986 0.77581 1.04533 1.03167 1.47107 1.07709 1.03553 1.77563 1.16157 0.84929 0.81463 0.77730 1.90865 1.13934 1.86992 1.60455 1.45191 1.10493 1.03955 1.78989 1.21089 0.94630 0.81489 1.00396 1.21581 0.97439 0.92597 1.02105 1.18943 0.95184 0.92199 0.95086 1.21704 0.93880 0.91823 1.50313 0.91461 1.26038 0.97032 1.02329 0.94800 1.70121 1.14798 1.20927 1.51778 0.85351 0.79314 0.78471 0.77607 1.18120 1.20604 1.20590 1.21022 0.96750 0.81723 0.95965 1.22512 1.02887 0.96501 0.97538 1.22660 0.98445 0.92267 0.88025 1.87918 1.81983 1.47096 1.14364 1.22657 0.98383 0.92162 0.88184 1.22535 1.02974 0.96586 0.97496 0.91256 0.90510 0.88610 0.75151 0.93594 0.93593 0.91341 0.91352 0.98964 0.98956 0.92812 0.90870 0.91119 0.89423 0.86685 0.93009 0.86646 0.93013 0.89272 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 9.19 127.77 1.17 2.10 16 2 N -0.62 -13.78 2.77 -839.96 -2.33 -16.11 16 3 C 0.70 21.97 8.28 179.05 1.48 23.45 16 4 O -0.64 -26.32 15.67 -3.98 -0.06 -26.39 16 5 N -0.73 -21.37 5.42 -478.54 -2.59 -23.97 16 6 C 0.15 5.46 5.67 86.38 0.49 5.95 16 7 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 8 C 0.02 1.24 4.97 29.85 0.15 1.38 16 9 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 10 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 11 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 12 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 13 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 14 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.15 3.01 2.61 45.11 0.12 3.13 16 18 C -0.16 -2.42 5.46 30.68 0.17 -2.26 16 19 C 0.06 0.89 6.84 72.01 0.49 1.38 16 20 O -0.39 -6.50 10.77 -148.98 -1.60 -8.10 16 21 C 0.06 0.88 6.84 72.01 0.49 1.37 16 22 C -0.16 -2.42 5.46 30.68 0.17 -2.25 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.08 0.93 6.36 -2.38 -0.02 0.92 16 25 H 0.10 0.90 6.38 -2.39 -0.02 0.88 16 26 H 0.41 9.18 6.20 -92.71 -0.58 8.60 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.07 1.95 6.91 -2.39 -0.02 1.93 16 35 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.09 1.15 7.57 -2.39 -0.02 1.13 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 1.13 6.56 -2.39 -0.02 1.11 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -73.39 335.83 1.73 -71.66 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.42 Total: 13.32 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.59 Total: 0.91 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -4.64 Total: -97.17 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.67 Total: -34.49 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -73.39 1.73 -71.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325205166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.431 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds